Wall clock time and date at job start Mon Mar 30 2020 00:44:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.46872 * 2 1 4 4 N 1.46491 * 109.47464 * 120.00110 * 2 1 3 5 5 C 1.46500 * 120.00187 * 292.65520 * 4 2 1 6 6 C 1.53004 * 109.46873 * 268.78585 * 5 4 2 7 7 C 1.50700 * 115.55195 * 155.31270 * 6 5 4 8 8 H 1.07996 * 119.99608 * 213.60244 * 7 6 5 9 9 C 1.37875 * 119.99976 * 33.32503 * 7 6 5 10 10 N 1.31515 * 119.99893 * 357.25147 * 9 7 6 11 11 Si 1.86798 * 119.99815 * 177.25300 * 9 7 6 12 12 H 1.48495 * 109.47227 * 90.00537 * 11 9 7 13 13 H 1.48502 * 109.46855 * 209.99904 * 11 9 7 14 14 H 1.48494 * 109.47256 * 329.99805 * 11 9 7 15 15 C 1.53008 * 117.49731 * 300.98183 * 6 5 4 16 16 C 1.53005 * 117.49531 * 9.63917 * 6 5 4 17 17 S 1.65603 * 120.00215 * 112.64530 * 4 2 1 18 18 C 1.81398 * 104.45104 * 294.65207 * 17 4 2 19 19 O 1.42100 * 104.27078 * 50.71875 * 17 4 2 20 20 O 1.42096 * 104.27784 * 178.57644 * 17 4 2 21 21 H 1.09000 * 109.47276 * 59.99776 * 1 2 3 22 22 H 1.09001 * 109.46977 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.46598 * 299.99783 * 1 2 3 24 24 H 1.09008 * 109.46894 * 240.00371 * 2 1 3 25 25 H 1.09001 * 109.47173 * 197.49172 * 3 2 1 26 26 H 1.09003 * 109.47543 * 317.49309 * 3 2 1 27 27 H 1.09002 * 109.47479 * 77.49732 * 3 2 1 28 28 H 1.08996 * 109.47602 * 148.78821 * 5 4 2 29 29 H 1.08996 * 109.47220 * 28.77879 * 5 4 2 30 30 H 0.96997 * 119.99997 * 184.99941 * 10 9 7 31 31 H 1.08996 * 117.49428 * 215.00098 * 15 6 5 32 32 H 1.08998 * 117.49632 * 0.02705 * 15 6 5 33 33 H 1.08997 * 117.49858 * 359.97438 * 16 6 5 34 34 H 1.09006 * 117.49341 * 144.97941 * 16 6 5 35 35 H 1.09003 * 109.47360 * 51.62239 * 18 17 4 36 36 H 1.09006 * 109.47387 * 171.61994 * 18 17 4 37 37 H 1.09005 * 109.46828 * 291.62364 * 18 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 1.8019 -0.1034 2.5207 6 6 2.9958 0.7802 2.8881 7 6 2.7120 1.8748 3.8843 8 1 3.2353 2.8170 3.8148 9 6 1.7803 1.6755 4.8809 10 7 1.1003 0.5508 4.9299 11 14 1.4839 3.0028 6.1614 12 1 0.4147 3.9179 5.6874 13 1 1.0656 2.3729 7.4395 14 1 2.7356 3.7726 6.3753 15 6 4.3748 0.1194 2.9383 16 6 4.0231 1.0711 1.7922 17 16 2.8151 -2.1351 1.0509 18 6 1.5652 -3.2781 0.4014 19 8 3.8176 -1.8858 0.0752 20 8 3.1610 -2.4801 2.3852 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3632 0.5138 0.8900 24 1 1.8934 -0.5138 -0.8901 25 1 3.0852 1.4584 -0.3089 26 1 1.4468 2.0376 -0.6944 27 1 1.9514 1.8593 1.0033 28 1 1.6983 -0.8991 3.2583 29 1 0.8942 0.4998 2.5068 30 1 0.3946 0.4390 5.5858 31 1 5.0768 0.4764 3.6919 32 1 4.4316 -0.9447 2.7092 33 1 3.8486 0.6327 0.8097 34 1 4.4934 2.0545 1.7916 35 1 1.0985 -2.8424 -0.4820 36 1 2.0402 -4.2219 0.1333 37 1 0.8058 -3.4569 1.1628 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596299174.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:54 Heat of formation + Delta-G solvation = -27.247052 kcal Electronic energy + Delta-G solvation = -19814.179032 eV Core-core repulsion = 16913.672218 eV Total energy + Delta-G solvation = -2900.506814 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 261.119 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.20900 -36.65127 -35.47123 -34.86779 -32.13772 -30.69694 -29.29600 -26.87177 -26.04846 -24.92377 -21.07994 -20.59502 -19.24403 -17.81953 -17.25200 -16.34761 -15.83810 -15.60231 -14.72294 -14.16978 -14.02059 -13.58457 -13.29671 -12.97157 -12.85840 -12.33916 -12.08173 -11.97404 -11.65731 -11.61422 -11.38285 -11.22215 -11.16527 -10.96452 -10.85646 -10.70377 -10.55943 -10.33944 -10.15234 -9.78737 -9.46149 -8.75770 -8.57117 -8.12641 -7.97194 -6.06198 -4.07166 0.70512 3.16406 3.27273 3.35413 3.39195 4.30538 4.37740 4.54129 4.88697 5.08571 5.09588 5.24093 5.46812 5.53034 5.68310 5.72867 5.80615 6.03741 6.15386 6.30256 6.33342 6.43021 6.55954 6.67827 6.77779 6.97241 7.06289 7.15481 7.26288 7.33167 7.51232 7.62901 7.82918 7.90230 8.47222 8.91577 9.51459 10.98711 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.025485 B = 0.008334 C = 0.007966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.407284 B = 3358.793486 C = 3514.250990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.147 3.853 3 C -0.167 4.167 4 N -0.992 5.992 5 C 0.184 3.816 6 C 0.037 3.963 7 C -0.480 4.480 8 H 0.061 0.939 9 C 0.066 3.934 10 N -0.887 5.887 11 Si 0.898 3.102 12 H -0.281 1.281 13 H -0.286 1.286 14 H -0.274 1.274 15 C -0.226 4.226 16 C -0.219 4.219 17 S 2.596 3.404 18 C -0.684 4.684 19 O -0.967 6.967 20 O -0.941 6.941 21 H 0.059 0.941 22 H 0.050 0.950 23 H 0.071 0.929 24 H 0.072 0.928 25 H 0.064 0.936 26 H 0.047 0.953 27 H 0.093 0.907 28 H 0.102 0.898 29 H 0.083 0.917 30 H 0.263 0.737 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.092 0.908 34 H 0.068 0.932 35 H 0.121 0.879 36 H 0.118 0.882 37 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.650 -4.390 -9.922 11.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.041 3.959 3 C -0.226 4.226 4 N -0.832 5.832 5 C 0.062 3.938 6 C 0.035 3.965 7 C -0.518 4.518 8 H 0.079 0.921 9 C -0.136 4.136 10 N -0.525 5.525 11 Si 0.726 3.274 12 H -0.207 1.207 13 H -0.212 1.212 14 H -0.199 1.199 15 C -0.264 4.264 16 C -0.256 4.256 17 S 2.689 3.311 18 C -0.832 4.832 19 O -0.957 6.957 20 O -0.931 6.931 21 H 0.078 0.922 22 H 0.069 0.931 23 H 0.090 0.910 24 H 0.091 0.909 25 H 0.083 0.917 26 H 0.066 0.934 27 H 0.112 0.888 28 H 0.120 0.880 29 H 0.101 0.899 30 H 0.073 0.927 31 H 0.090 0.910 32 H 0.096 0.904 33 H 0.110 0.890 34 H 0.086 0.914 35 H 0.140 0.860 36 H 0.137 0.863 37 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -2.881 -4.706 -9.533 11.015 hybrid contribution -0.792 0.468 0.475 1.035 sum -3.673 -4.238 -9.058 10.654 Atomic orbital electron populations 1.22268 0.95884 1.01618 1.02724 1.20687 0.93637 0.95316 0.86285 1.22526 1.00821 0.94690 1.04537 1.57867 1.75544 1.35705 1.14049 1.21069 0.98049 0.97495 0.77155 1.19482 0.86548 0.95989 0.94449 1.20609 1.22518 0.98691 1.10011 0.92120 1.25001 0.95988 0.95425 0.97218 1.69893 1.22197 1.24044 1.36329 0.86492 0.78449 0.81472 0.81025 1.20704 1.21166 1.19923 1.23360 1.04864 0.96910 1.01248 1.23486 1.08280 0.99338 0.94531 1.05267 0.75937 0.75144 0.74762 1.30707 1.20868 1.17976 1.13605 1.93572 1.54354 1.83753 1.63988 1.93628 1.81572 1.83539 1.34410 0.92220 0.93121 0.91045 0.90945 0.91695 0.93396 0.88797 0.88010 0.89890 0.92691 0.91017 0.90399 0.88993 0.91367 0.85979 0.86301 0.85371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.12 9.21 37.16 0.34 -1.78 16 2 C 0.15 2.23 2.93 -67.93 -0.20 2.03 16 3 C -0.17 -2.69 7.58 37.16 0.28 -2.41 16 4 N -0.99 -17.94 1.47 -107.30 -0.16 -18.10 16 5 C 0.18 4.12 3.05 -4.04 -0.01 4.11 16 6 C 0.04 0.92 1.59 -155.65 -0.25 0.68 16 7 C -0.48 -12.86 9.04 -34.44 -0.31 -13.17 16 8 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 9 C 0.07 1.74 5.35 -17.82 -0.10 1.65 16 10 N -0.89 -23.76 10.51 55.43 0.58 -23.18 16 11 Si 0.90 20.65 29.54 -169.99 -5.02 15.63 16 12 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 13 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 14 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 15 C -0.23 -5.64 9.55 -26.69 -0.25 -5.89 16 16 C -0.22 -4.97 7.19 -26.69 -0.19 -5.16 16 17 S 2.60 45.28 4.95 -107.50 -0.53 44.75 16 18 C -0.68 -8.08 10.90 101.05 1.10 -6.98 16 19 O -0.97 -18.79 17.12 -57.54 -0.98 -19.78 16 20 O -0.94 -20.15 14.01 -57.54 -0.81 -20.95 16 21 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 22 H 0.05 0.56 8.06 -51.93 -0.42 0.15 16 23 H 0.07 1.04 6.99 -51.93 -0.36 0.68 16 24 H 0.07 0.95 7.55 -51.92 -0.39 0.56 16 25 H 0.06 1.07 6.07 -51.93 -0.32 0.76 16 26 H 0.05 0.64 8.02 -51.93 -0.42 0.22 16 27 H 0.09 1.80 5.36 -51.93 -0.28 1.52 16 28 H 0.10 2.52 6.26 -51.93 -0.33 2.20 16 29 H 0.08 1.90 6.23 -51.93 -0.32 1.57 16 30 H 0.26 6.72 8.32 -40.82 -0.34 6.38 16 31 H 0.07 1.81 8.14 -51.93 -0.42 1.38 16 32 H 0.08 1.95 4.76 -51.93 -0.25 1.70 16 33 H 0.09 1.95 3.77 -51.93 -0.20 1.75 16 34 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 35 H 0.12 1.19 8.06 -51.92 -0.42 0.77 16 36 H 0.12 1.17 8.14 -51.92 -0.42 0.75 16 37 H 0.13 1.41 8.14 -51.92 -0.42 0.99 16 LS Contribution 293.30 15.07 4.42 4.42 Total: -1.00 -30.89 293.30 -7.44 -38.33 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -5.35 Total: 5.81 kcal Atomic # 6 Polarization: -27.34 SS G_CDS: 0.41 Total: -26.93 kcal Atomic # 7 Polarization: -41.70 SS G_CDS: 0.42 Total: -41.28 kcal Atomic # 8 Polarization: -38.94 SS G_CDS: -1.79 Total: -40.73 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Atomic # 16 Polarization: 45.28 SS G_CDS: -0.53 Total: 44.75 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -30.89 -7.44 -38.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596299174.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.081 kcal (2) G-P(sol) polarization free energy of solvation -30.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds