Wall clock time and date at job start Mon Mar 30 2020 00:08:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31691 * 119.72216 * 2 1 4 4 C 1.31933 * 121.88798 * 179.97438 * 3 2 1 5 5 C 1.38359 * 121.09008 * 359.97438 * 4 3 2 6 6 C 1.38349 * 119.31036 * 0.02562 * 5 4 3 7 7 C 1.39580 * 119.72414 * 180.23016 * 2 1 3 8 8 C 1.47719 * 120.56119 * 0.03520 * 7 2 1 9 9 O 1.21473 * 120.00347 * 6.92781 * 8 7 2 10 10 O 1.34709 * 119.99826 * 186.93600 * 8 7 2 11 11 C 1.45202 * 116.99662 * 185.13289 * 10 8 7 12 12 C 1.53004 * 109.46970 * 175.22332 * 11 10 8 13 13 C 1.50695 * 115.55310 * 305.73454 * 12 11 10 14 14 H 1.08000 * 120.00352 * 144.24443 * 13 12 11 15 15 C 1.37874 * 120.00151 * 324.25303 * 13 12 11 16 16 N 1.31518 * 119.99642 * 3.17184 * 15 13 12 17 17 Si 1.86797 * 120.00241 * 183.17629 * 15 13 12 18 18 H 1.48497 * 109.47194 * 59.99608 * 17 15 13 19 19 H 1.48505 * 109.47188 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.47083 * 299.99623 * 17 15 13 21 21 C 1.52997 * 117.49831 * 160.06247 * 12 11 10 22 22 C 1.53003 * 117.49531 * 91.40197 * 12 11 10 23 23 H 1.08998 * 109.46909 * 97.35302 * 1 2 3 24 24 H 1.09000 * 109.46988 * 217.34777 * 1 2 3 25 25 H 1.09000 * 109.47095 * 337.35197 * 1 2 3 26 26 H 1.07995 * 119.45479 * 180.02562 * 4 3 2 27 27 H 1.07996 * 120.34924 * 179.97438 * 5 4 3 28 28 H 1.07994 * 120.85654 * 179.97438 * 6 5 4 29 29 H 1.08995 * 109.47712 * 295.22275 * 11 10 8 30 30 H 1.09002 * 109.47600 * 55.22995 * 11 10 8 31 31 H 0.97006 * 119.99594 * 185.00987 * 16 15 13 32 32 H 1.09001 * 117.49971 * 0.02562 * 21 12 11 33 33 H 1.09003 * 117.50191 * 145.02530 * 21 12 11 34 34 H 1.09000 * 117.49907 * 214.97814 * 22 12 11 35 35 H 1.09003 * 117.49868 * 359.97438 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1599 1.1437 0.0000 4 6 3.4783 1.1935 0.0005 5 6 4.2370 0.0365 0.0016 6 6 3.5996 -1.1914 0.0016 7 6 2.1991 -1.2121 -0.0049 8 6 1.4668 -2.4951 -0.0108 9 8 0.2589 -2.5044 -0.1384 10 8 2.1387 -3.6547 0.1254 11 6 1.3711 -4.8804 -0.0041 12 6 2.3152 -6.0826 0.0608 13 6 3.4587 -6.0649 -0.9206 14 1 4.4219 -6.4610 -0.6347 15 6 3.2753 -5.5429 -2.1834 16 7 2.1212 -5.0039 -2.5109 17 14 4.6659 -5.6013 -3.4293 18 1 5.0492 -7.0143 -3.6773 19 1 4.2173 -4.9799 -4.7013 20 1 5.8364 -4.8565 -2.8998 21 6 1.7055 -7.4416 0.4106 22 6 2.5729 -6.7051 1.4345 23 1 -0.3633 -0.1315 -1.0192 24 1 -0.3633 -0.8170 0.6234 25 1 -0.3633 0.9484 0.3957 26 1 3.9734 2.1533 0.0009 27 1 5.3156 0.0913 0.0016 28 1 4.1672 -2.1101 0.0020 29 1 0.6468 -4.9430 0.8080 30 1 0.8467 -4.8815 -0.9596 31 1 1.9672 -4.7025 -3.4200 32 1 0.6317 -7.4792 0.5940 33 1 2.1316 -8.3229 -0.0689 34 1 3.5693 -7.1022 1.6283 35 1 2.0701 -6.2579 2.2921 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000768793039.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:08:30 Heat of formation + Delta-G solvation = -21.707018 kcal Electronic energy + Delta-G solvation = -19552.280401 eV Core-core repulsion = 16516.569870 eV Total energy + Delta-G solvation = -3035.710531 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 261.115 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.43776 -38.91652 -36.76020 -35.09298 -32.80929 -32.26480 -32.21338 -27.88942 -26.48360 -25.45911 -24.21594 -22.04779 -21.31749 -20.54277 -19.20419 -17.22729 -16.85182 -16.36245 -15.78147 -15.49382 -15.39050 -14.71737 -14.12919 -14.00171 -13.59435 -13.07240 -12.91133 -12.34571 -12.28294 -12.18175 -11.83989 -11.69011 -11.46526 -11.07645 -10.83166 -10.55744 -10.38957 -9.92473 -9.73736 -9.70431 -9.39518 -9.24916 -9.01890 -8.88435 -8.80233 -8.28100 -6.05134 -4.17469 0.79344 1.33172 3.12190 3.23203 3.29973 3.31260 3.50925 3.98869 4.30567 4.37097 4.84718 4.91682 4.96687 5.07197 5.27901 5.44689 5.62571 5.73005 5.90095 5.96663 6.02280 6.17474 6.18963 6.25949 6.40621 6.45539 6.59385 6.60092 6.70819 6.79851 6.94459 7.20053 7.41421 7.55256 7.85838 7.96916 8.27457 8.62666 8.81201 9.44814 10.91022 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.018977 B = 0.007163 C = 0.006069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.082292 B = 3907.796258 C = 4612.261385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.185 3.815 3 N -0.497 5.497 4 C 0.122 3.878 5 C -0.197 4.197 6 C -0.012 4.012 7 C -0.166 4.166 8 C 0.508 3.492 9 O -0.515 6.515 10 O -0.317 6.317 11 C 0.121 3.879 12 C 0.044 3.956 13 C -0.480 4.480 14 H 0.061 0.939 15 C 0.073 3.927 16 N -0.884 5.884 17 Si 0.896 3.104 18 H -0.276 1.276 19 H -0.286 1.286 20 H -0.275 1.275 21 C -0.194 4.194 22 C -0.209 4.209 23 H 0.084 0.916 24 H 0.100 0.900 25 H 0.067 0.933 26 H 0.158 0.842 27 H 0.140 0.860 28 H 0.155 0.845 29 H 0.022 0.978 30 H 0.119 0.881 31 H 0.263 0.737 32 H 0.068 0.932 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.685 8.398 4.441 9.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.047 3.953 3 N -0.207 5.207 4 C -0.034 4.034 5 C -0.217 4.217 6 C -0.038 4.038 7 C -0.169 4.169 8 C 0.352 3.648 9 O -0.408 6.408 10 O -0.230 6.230 11 C 0.048 3.952 12 C 0.044 3.956 13 C -0.517 4.517 14 H 0.080 0.920 15 C -0.129 4.129 16 N -0.522 5.522 17 Si 0.724 3.276 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.201 1.201 21 C -0.232 4.232 22 C -0.247 4.247 23 H 0.102 0.898 24 H 0.118 0.882 25 H 0.086 0.914 26 H 0.175 0.825 27 H 0.158 0.842 28 H 0.173 0.827 29 H 0.040 0.960 30 H 0.137 0.863 31 H 0.073 0.927 32 H 0.086 0.914 33 H 0.102 0.898 34 H 0.097 0.903 35 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.799 9.261 4.268 10.229 hybrid contribution 1.251 -0.983 -0.746 1.757 sum 2.050 8.279 3.521 9.227 Atomic orbital electron populations 1.21024 0.87625 1.03422 1.04384 1.21519 0.97575 0.86520 0.89683 1.67654 1.09981 1.28348 1.14721 1.22936 0.89517 0.98640 0.92353 1.22122 1.01800 0.93048 1.04700 1.22108 0.93368 0.99557 0.88781 1.20214 0.94573 0.92767 1.09336 1.20637 0.85653 0.85021 0.73501 1.90703 1.15196 1.88202 1.46683 1.86471 1.42576 1.14198 1.79791 1.22915 0.91743 0.78587 1.01984 1.18941 0.96450 0.88022 0.92215 1.20431 0.95466 1.39255 0.96517 0.92033 1.24948 0.95929 0.93645 0.98424 1.69763 1.23215 1.40158 1.19024 0.86587 0.82202 0.78411 0.80430 1.20167 1.21201 1.20063 1.22986 0.96629 0.98743 1.04880 1.22961 0.99918 1.07752 0.94019 0.89774 0.88192 0.91412 0.82473 0.84214 0.82742 0.95973 0.86312 0.92658 0.91376 0.89778 0.90326 0.91251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.66 8.82 36.00 0.32 -1.35 16 2 C 0.18 3.13 6.82 -82.15 -0.56 2.57 16 3 N -0.50 -7.70 10.26 -9.13 -0.09 -7.79 16 4 C 0.12 1.56 11.17 -17.46 -0.20 1.36 16 5 C -0.20 -2.52 10.10 -39.50 -0.40 -2.92 16 6 C -0.01 -0.20 9.74 -38.85 -0.38 -0.58 16 7 C -0.17 -3.05 5.89 -104.84 -0.62 -3.67 16 8 C 0.51 10.97 7.82 34.60 0.27 11.24 16 9 O -0.52 -11.59 13.20 -19.25 -0.25 -11.84 16 10 O -0.32 -7.45 9.15 -40.52 -0.37 -7.82 16 11 C 0.12 2.93 4.38 37.16 0.16 3.09 16 12 C 0.04 1.08 2.20 -155.66 -0.34 0.73 16 13 C -0.48 -12.60 8.79 -34.44 -0.30 -12.90 16 14 H 0.06 1.60 7.82 -52.49 -0.41 1.19 16 15 C 0.07 1.91 5.35 -17.82 -0.10 1.82 16 16 N -0.88 -23.90 10.25 55.43 0.57 -23.33 16 17 Si 0.90 20.45 29.54 -169.99 -5.02 15.43 16 18 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 19 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 21 C -0.19 -4.22 9.96 -26.69 -0.27 -4.49 16 22 C -0.21 -4.44 9.92 -26.69 -0.26 -4.70 16 23 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 24 H 0.10 1.66 5.96 -51.93 -0.31 1.35 16 25 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 26 H 0.16 1.39 8.06 -52.49 -0.42 0.97 16 27 H 0.14 1.33 8.06 -52.49 -0.42 0.91 16 28 H 0.15 2.56 7.72 -52.49 -0.41 2.15 16 29 H 0.02 0.51 8.09 -51.93 -0.42 0.09 16 30 H 0.12 3.18 5.88 -51.93 -0.31 2.88 16 31 H 0.26 6.94 8.32 -40.82 -0.34 6.60 16 32 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 33 H 0.08 1.80 8.14 -51.93 -0.42 1.38 16 34 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 35 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 LS Contribution 303.42 15.07 4.57 4.57 Total: -1.00 -28.78 303.42 -7.64 -36.42 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -4.37 Total: 4.16 kcal Atomic # 6 Polarization: -7.13 SS G_CDS: -2.67 Total: -9.80 kcal Atomic # 7 Polarization: -31.60 SS G_CDS: 0.47 Total: -31.12 kcal Atomic # 8 Polarization: -19.04 SS G_CDS: -0.62 Total: -19.66 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -28.78 -7.64 -36.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000768793039.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.715 kcal (2) G-P(sol) polarization free energy of solvation -28.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds