Wall clock time and date at job start Sun Mar 29 2020 23:40:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31421 * 1 3 3 Si 1.86807 * 119.99766 * 2 1 4 4 H 1.48498 * 109.47204 * 270.00660 * 3 2 1 5 5 H 1.48502 * 109.46626 * 30.00285 * 3 2 1 6 6 H 1.48496 * 109.46966 * 150.00058 * 3 2 1 7 7 C 1.38886 * 120.00316 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00197 * 185.46576 * 7 2 1 9 9 N 1.37138 * 120.00105 * 5.46342 * 7 2 1 10 10 C 1.34777 * 120.00316 * 233.62702 * 9 7 2 11 11 O 1.21271 * 120.00358 * 186.00399 * 10 9 7 12 12 C 1.50705 * 119.99641 * 6.00131 * 10 9 7 13 13 O 1.42903 * 109.47120 * 174.98870 * 12 10 9 14 14 C 1.42896 * 114.00091 * 179.97438 * 13 12 10 15 15 C 1.53000 * 117.50033 * 218.62454 * 14 13 12 16 16 C 1.52996 * 117.49803 * 149.99803 * 14 13 12 17 17 C 1.39795 * 120.00131 * 53.62425 * 9 7 2 18 18 C 1.38956 * 120.08105 * 188.28354 * 17 9 7 19 19 C 1.38080 * 119.92402 * 179.78825 * 18 17 9 20 20 C 1.38308 * 120.07456 * 0.46746 * 19 18 17 21 21 C 1.38312 * 120.15866 * 359.78676 * 20 19 18 22 22 C 1.38078 * 120.07574 * 359.97438 * 21 20 19 23 23 H 0.97000 * 120.00269 * 4.99168 * 1 2 3 24 24 H 1.09001 * 109.47336 * 54.98929 * 12 10 9 25 25 H 1.09004 * 109.47043 * 294.98614 * 12 10 9 26 26 H 1.09002 * 115.54972 * 4.33271 * 14 13 12 27 27 H 1.08999 * 117.49821 * 359.97438 * 15 14 13 28 28 H 1.08996 * 117.50017 * 145.02007 * 15 14 13 29 29 H 1.09004 * 117.50001 * 214.97908 * 16 14 13 30 30 H 1.09001 * 117.50040 * 359.97438 * 16 14 13 31 31 H 1.08009 * 120.03576 * 359.97438 * 18 17 9 32 32 H 1.07999 * 119.96219 * 180.24966 * 19 18 17 33 33 H 1.08000 * 119.92286 * 179.76069 * 20 19 18 34 34 H 1.07996 * 119.95854 * 179.97438 * 21 20 19 35 35 H 1.07995 * 120.03984 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 2.4955 2.0466 -1.4000 5 1 1.4455 2.6526 0.7001 6 1 3.5457 1.4403 0.7000 7 6 2.0087 -1.2028 -0.0005 8 1 3.0850 -1.2049 0.0885 9 7 1.3278 -2.3877 -0.1141 10 6 1.5138 -3.3620 0.7983 11 8 0.9972 -4.4477 0.6400 12 6 2.3638 -3.1023 2.0153 13 8 2.3141 -4.2373 2.8822 14 6 3.0914 -4.0939 4.0726 15 6 3.8486 -5.3251 4.5745 16 6 2.6095 -4.8308 5.3239 17 6 0.4406 -2.5851 -1.1764 18 6 -0.3766 -3.7086 -1.2017 19 6 -1.2548 -3.8981 -2.2503 20 6 -1.3147 -2.9760 -3.2794 21 6 -0.4990 -1.8592 -3.2602 22 6 0.3780 -1.6609 -2.2123 23 1 -0.4850 0.8368 -0.0731 24 1 1.9860 -2.2260 2.5421 25 1 3.3943 -2.9250 1.7076 26 1 3.5631 -3.1212 4.2118 27 1 3.7535 -6.2445 3.9968 28 1 4.8188 -5.1625 5.0438 29 1 2.7647 -4.3431 6.2863 30 1 1.6994 -5.4246 5.2391 31 1 -0.3270 -4.4314 -0.4006 32 1 -1.8931 -4.7691 -2.2686 33 1 -1.9997 -3.1287 -4.1003 34 1 -0.5481 -1.1415 -4.0656 35 1 1.0150 -0.7889 -2.1980 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000888564143.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:40:28 Heat of formation + Delta-G solvation = -3.449633 kcal Electronic energy + Delta-G solvation = -19401.954200 eV Core-core repulsion = 16367.035369 eV Total energy + Delta-G solvation = -3034.918831 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 261.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.72427 -38.17214 -37.03942 -35.03289 -34.46980 -31.93867 -29.69809 -29.35074 -26.71261 -25.17855 -22.29331 -21.90124 -21.56258 -21.17855 -19.47227 -17.90225 -16.79757 -16.10258 -15.65354 -15.36046 -14.99784 -14.80906 -14.26712 -13.81355 -13.49979 -13.21146 -12.93765 -12.75451 -12.25789 -11.90347 -11.68685 -11.44138 -11.39732 -11.28075 -11.10022 -10.92296 -10.77317 -10.50693 -10.34933 -10.02826 -9.29619 -8.85607 -8.81400 -8.23519 -7.79443 -6.92679 -6.34632 -4.57887 2.42288 2.56680 2.99759 3.07632 3.10510 3.47713 3.74171 3.94808 3.97921 4.68676 4.72192 4.94441 5.07839 5.14973 5.43357 5.57099 5.69851 5.77568 5.86546 5.88052 5.99640 6.04712 6.08817 6.16740 6.23217 6.67997 6.72553 6.88262 7.11162 7.20198 7.48732 7.51565 7.61618 7.65755 7.77459 8.03139 8.40265 8.80442 9.19085 9.57501 10.44658 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.016437 B = 0.007403 C = 0.005343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.105604 B = 3781.378667 C = 5239.688590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.837 5.837 2 C 0.058 3.942 3 Si 0.917 3.083 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.265 1.265 7 C -0.377 4.377 8 H 0.094 0.906 9 N -0.384 5.384 10 C 0.494 3.506 11 O -0.549 6.549 12 C 0.067 3.933 13 O -0.338 6.338 14 C 0.020 3.980 15 C -0.192 4.192 16 C -0.186 4.186 17 C 0.196 3.804 18 C -0.183 4.183 19 C -0.116 4.116 20 C -0.174 4.174 21 C -0.119 4.119 22 C -0.107 4.107 23 H 0.276 0.724 24 H 0.085 0.915 25 H 0.074 0.926 26 H 0.110 0.890 27 H 0.099 0.901 28 H 0.096 0.904 29 H 0.097 0.903 30 H 0.100 0.900 31 H 0.165 0.835 32 H 0.105 0.895 33 H 0.101 0.899 34 H 0.104 0.896 35 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.503 -1.525 3.507 5.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.468 5.468 2 C -0.153 4.153 3 Si 0.742 3.258 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.504 4.504 8 H 0.111 0.889 9 N -0.093 5.093 10 C 0.285 3.715 11 O -0.431 6.431 12 C -0.012 4.012 13 O -0.256 6.256 14 C -0.039 4.039 15 C -0.229 4.229 16 C -0.224 4.224 17 C 0.100 3.900 18 C -0.202 4.202 19 C -0.135 4.135 20 C -0.194 4.194 21 C -0.138 4.138 22 C -0.128 4.128 23 H 0.086 0.914 24 H 0.103 0.897 25 H 0.092 0.908 26 H 0.128 0.872 27 H 0.118 0.882 28 H 0.115 0.885 29 H 0.116 0.884 30 H 0.118 0.882 31 H 0.181 0.819 32 H 0.123 0.877 33 H 0.119 0.881 34 H 0.123 0.877 35 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 4.014 -2.076 3.539 5.740 hybrid contribution 0.385 1.420 -0.035 1.472 sum 4.399 -0.656 3.504 5.662 Atomic orbital electron populations 1.69963 1.06144 1.28775 1.41934 1.25640 0.95342 1.00141 0.94191 0.86086 0.79616 0.81108 0.79005 1.19735 1.20511 1.18948 1.19355 0.91679 0.82101 1.57286 0.88869 1.40903 1.36246 1.13805 1.18355 1.20403 0.82745 0.84620 0.83758 1.90316 1.50693 1.25409 1.76697 1.22081 0.99899 0.88628 0.90620 1.87909 1.68289 1.39163 1.30214 1.22637 0.98304 0.96130 0.86814 1.23366 0.95961 0.99779 1.03837 1.23307 0.99025 1.04452 0.95574 1.18145 0.91036 0.93487 0.87348 1.22381 0.96791 0.99998 1.01067 1.20837 0.98907 0.98705 0.95080 1.20755 1.02192 0.96701 0.99733 1.20723 0.97490 0.97440 0.98187 1.20734 1.00116 0.99326 0.92606 0.91387 0.89739 0.90791 0.87215 0.88236 0.88531 0.88436 0.88196 0.81875 0.87671 0.88124 0.87747 0.85901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -21.51 11.62 55.49 0.64 -20.87 16 2 C 0.06 1.38 3.85 -17.49 -0.07 1.31 16 3 Si 0.92 18.15 29.56 -169.99 -5.02 13.13 16 4 H -0.27 -5.37 7.11 56.52 0.40 -4.96 16 5 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 6 H -0.27 -5.06 7.11 56.52 0.40 -4.65 16 7 C -0.38 -9.07 7.40 -14.94 -0.11 -9.18 16 8 H 0.09 2.10 7.78 -52.49 -0.41 1.69 16 9 N -0.38 -9.67 2.66 -58.98 -0.16 -9.82 16 10 C 0.49 12.06 7.60 -10.98 -0.08 11.97 16 11 O -0.55 -14.43 13.03 -14.29 -0.19 -14.62 16 12 C 0.07 1.34 5.11 36.01 0.18 1.52 16 13 O -0.34 -6.67 10.13 -55.09 -0.56 -7.23 16 14 C 0.02 0.30 6.44 -26.73 -0.17 0.12 16 15 C -0.19 -2.40 10.48 -26.73 -0.28 -2.68 16 16 C -0.19 -2.36 10.48 -26.73 -0.28 -2.64 16 17 C 0.20 4.99 5.71 -83.69 -0.48 4.51 16 18 C -0.18 -4.47 8.96 -39.37 -0.35 -4.82 16 19 C -0.12 -2.48 10.04 -39.61 -0.40 -2.88 16 20 C -0.17 -3.51 10.04 -39.53 -0.40 -3.90 16 21 C -0.12 -2.51 10.04 -39.61 -0.40 -2.91 16 22 C -0.11 -2.55 7.86 -39.37 -0.31 -2.86 16 23 H 0.28 6.71 8.32 -40.82 -0.34 6.37 16 24 H 0.08 1.66 8.05 -51.93 -0.42 1.24 16 25 H 0.07 1.33 8.08 -51.93 -0.42 0.91 16 26 H 0.11 1.39 7.93 -51.93 -0.41 0.98 16 27 H 0.10 1.32 8.14 -51.93 -0.42 0.89 16 28 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 29 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 31 H 0.16 4.20 4.75 -55.00 -0.26 3.94 16 32 H 0.11 1.93 8.06 -52.49 -0.42 1.51 16 33 H 0.10 1.70 8.06 -52.49 -0.42 1.27 16 34 H 0.10 1.89 8.06 -52.49 -0.42 1.47 16 35 H 0.12 2.98 6.03 -52.49 -0.32 2.66 16 LS Contribution 300.01 15.07 4.52 4.52 Total: -1.00 -28.93 300.01 -8.23 -37.16 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: -4.33 Total: 10.15 kcal Atomic # 6 Polarization: -9.29 SS G_CDS: -3.14 Total: -12.43 kcal Atomic # 7 Polarization: -31.18 SS G_CDS: 0.49 Total: -30.69 kcal Atomic # 8 Polarization: -21.10 SS G_CDS: -0.74 Total: -21.85 kcal Atomic # 14 Polarization: 18.15 SS G_CDS: -5.02 Total: 13.13 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -28.93 -8.23 -37.16 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888564143.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.713 kcal (2) G-P(sol) polarization free energy of solvation -28.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds