Wall clock time and date at job start Sun Mar 29 2020 23:40:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31421 * 1 3 3 Si 1.86807 * 119.99766 * 2 1 4 4 H 1.48498 * 109.47204 * 270.00660 * 3 2 1 5 5 H 1.48502 * 109.46626 * 30.00285 * 3 2 1 6 6 H 1.48496 * 109.46966 * 150.00058 * 3 2 1 7 7 C 1.38886 * 120.00316 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00197 * 185.46576 * 7 2 1 9 9 N 1.37138 * 120.00105 * 5.46342 * 7 2 1 10 10 C 1.34777 * 120.00316 * 233.62702 * 9 7 2 11 11 O 1.21271 * 120.00358 * 186.00399 * 10 9 7 12 12 C 1.50705 * 119.99641 * 6.00131 * 10 9 7 13 13 O 1.42903 * 109.47120 * 174.98870 * 12 10 9 14 14 C 1.42896 * 114.00091 * 179.97438 * 13 12 10 15 15 C 1.53000 * 117.50033 * 218.62454 * 14 13 12 16 16 C 1.52996 * 117.49803 * 149.99803 * 14 13 12 17 17 C 1.39795 * 120.00131 * 53.62425 * 9 7 2 18 18 C 1.38956 * 120.08105 * 188.28354 * 17 9 7 19 19 C 1.38080 * 119.92402 * 179.78825 * 18 17 9 20 20 C 1.38308 * 120.07456 * 0.46746 * 19 18 17 21 21 C 1.38312 * 120.15866 * 359.78676 * 20 19 18 22 22 C 1.38078 * 120.07574 * 359.97438 * 21 20 19 23 23 H 0.97000 * 120.00269 * 4.99168 * 1 2 3 24 24 H 1.09001 * 109.47336 * 54.98929 * 12 10 9 25 25 H 1.09004 * 109.47043 * 294.98614 * 12 10 9 26 26 H 1.09002 * 115.54972 * 4.33271 * 14 13 12 27 27 H 1.08999 * 117.49821 * 359.97438 * 15 14 13 28 28 H 1.08996 * 117.50017 * 145.02007 * 15 14 13 29 29 H 1.09004 * 117.50001 * 214.97908 * 16 14 13 30 30 H 1.09001 * 117.50040 * 359.97438 * 16 14 13 31 31 H 1.08009 * 120.03576 * 359.97438 * 18 17 9 32 32 H 1.07999 * 119.96219 * 180.24966 * 19 18 17 33 33 H 1.08000 * 119.92286 * 179.76069 * 20 19 18 34 34 H 1.07996 * 119.95854 * 179.97438 * 21 20 19 35 35 H 1.07995 * 120.03984 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 2.4955 2.0466 -1.4000 5 1 1.4455 2.6526 0.7001 6 1 3.5457 1.4403 0.7000 7 6 2.0087 -1.2028 -0.0005 8 1 3.0850 -1.2049 0.0885 9 7 1.3278 -2.3877 -0.1141 10 6 1.5138 -3.3620 0.7983 11 8 0.9972 -4.4477 0.6400 12 6 2.3638 -3.1023 2.0153 13 8 2.3141 -4.2373 2.8822 14 6 3.0914 -4.0939 4.0726 15 6 3.8486 -5.3251 4.5745 16 6 2.6095 -4.8308 5.3239 17 6 0.4406 -2.5851 -1.1764 18 6 -0.3766 -3.7086 -1.2017 19 6 -1.2548 -3.8981 -2.2503 20 6 -1.3147 -2.9760 -3.2794 21 6 -0.4990 -1.8592 -3.2602 22 6 0.3780 -1.6609 -2.2123 23 1 -0.4850 0.8368 -0.0731 24 1 1.9860 -2.2260 2.5421 25 1 3.3943 -2.9250 1.7076 26 1 3.5631 -3.1212 4.2118 27 1 3.7535 -6.2445 3.9968 28 1 4.8188 -5.1625 5.0438 29 1 2.7647 -4.3431 6.2863 30 1 1.6994 -5.4246 5.2391 31 1 -0.3270 -4.4314 -0.4006 32 1 -1.8931 -4.7691 -2.2686 33 1 -1.9997 -3.1287 -4.1003 34 1 -0.5481 -1.1415 -4.0656 35 1 1.0150 -0.7889 -2.1980 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000888564143.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:40:27 Heat of formation + Delta-G solvation = -18.827198 kcal Electronic energy + Delta-G solvation = -19402.621021 eV Core-core repulsion = 16367.035369 eV Total energy + Delta-G solvation = -3035.585653 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 261.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.52072 -39.56413 -38.67943 -36.84101 -35.76239 -33.78806 -31.43908 -31.07009 -28.36546 -27.01161 -23.55587 -23.27972 -22.93715 -22.79051 -21.27907 -19.65128 -18.27890 -17.66996 -17.41915 -17.04505 -16.61342 -16.37062 -15.73725 -15.23200 -15.15593 -14.80872 -14.59051 -14.35450 -13.97255 -13.61827 -13.36649 -13.06078 -12.81435 -12.75752 -12.42070 -12.40495 -12.30117 -12.09179 -11.73483 -11.38179 -11.08925 -10.63050 -10.09729 -10.06925 -9.54796 -8.74731 -8.15811 -6.45622 0.66440 0.80005 1.43321 1.46592 1.58036 1.86847 2.08983 2.32960 2.92103 2.93225 3.16138 3.36415 3.89794 3.96539 4.06842 4.24894 4.31525 4.33878 4.38501 4.46135 4.58085 4.64769 4.75599 4.90581 4.97360 5.01398 5.12513 5.25584 5.33957 5.40311 5.77023 5.84286 5.87342 6.00469 6.20949 6.24924 6.59266 6.97089 7.35111 7.74510 8.65096 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.016437 B = 0.007403 C = 0.005343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.105604 B = 3781.378667 C = 5239.688590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.022 3.978 3 Si 0.985 3.015 4 H -0.269 1.269 5 H -0.284 1.284 6 H -0.249 1.249 7 C -0.388 4.388 8 H 0.105 0.895 9 N -0.394 5.394 10 C 0.474 3.526 11 O -0.581 6.581 12 C 0.082 3.918 13 O -0.371 6.371 14 C -0.014 4.014 15 C -0.178 4.178 16 C -0.179 4.179 17 C 0.163 3.837 18 C -0.212 4.212 19 C -0.117 4.117 20 C -0.165 4.165 21 C -0.118 4.118 22 C -0.123 4.123 23 H 0.275 0.725 24 H 0.086 0.914 25 H 0.095 0.905 26 H 0.132 0.868 27 H 0.086 0.914 28 H 0.129 0.871 29 H 0.128 0.872 30 H 0.084 0.916 31 H 0.144 0.856 32 H 0.134 0.866 33 H 0.144 0.856 34 H 0.137 0.863 35 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.277 -0.575 3.299 6.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.185 4.185 3 Si 0.807 3.193 4 H -0.194 1.194 5 H -0.209 1.209 6 H -0.173 1.173 7 C -0.515 4.515 8 H 0.123 0.877 9 N -0.104 5.104 10 C 0.266 3.734 11 O -0.465 6.465 12 C 0.004 3.996 13 O -0.289 6.289 14 C -0.071 4.071 15 C -0.215 4.215 16 C -0.216 4.216 17 C 0.067 3.933 18 C -0.232 4.232 19 C -0.136 4.136 20 C -0.183 4.183 21 C -0.137 4.137 22 C -0.144 4.144 23 H 0.085 0.915 24 H 0.104 0.896 25 H 0.113 0.887 26 H 0.150 0.850 27 H 0.105 0.895 28 H 0.147 0.853 29 H 0.146 0.854 30 H 0.103 0.897 31 H 0.161 0.839 32 H 0.152 0.848 33 H 0.162 0.838 34 H 0.155 0.845 35 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 4.807 -1.136 3.335 5.960 hybrid contribution 0.089 1.040 0.002 1.043 sum 4.896 -0.096 3.337 5.925 Atomic orbital electron populations 1.70098 1.07910 1.29484 1.43289 1.26444 0.95839 1.03119 0.93114 0.85050 0.78765 0.76454 0.79035 1.19418 1.20921 1.17257 1.19740 0.92287 0.82158 1.57277 0.87715 1.41181 1.36274 1.14273 1.18655 1.21229 0.83118 0.84239 0.84834 1.90287 1.52127 1.26524 1.77606 1.21879 0.99898 0.88732 0.89133 1.87855 1.69899 1.39177 1.31971 1.23104 0.99729 0.98367 0.85945 1.23453 0.97339 0.97914 1.02820 1.23414 0.98615 1.03634 0.95958 1.18531 0.91979 0.94466 0.88303 1.22376 0.98602 1.00029 1.02156 1.21200 0.98126 0.99959 0.94285 1.21201 1.01763 0.95318 1.00053 1.21152 0.96252 0.98326 0.97962 1.20789 1.01269 0.98887 0.93484 0.91520 0.89631 0.88743 0.85018 0.89547 0.85321 0.85410 0.89718 0.83935 0.84836 0.83810 0.84470 0.87017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -45.71 11.62 21.65 0.25 -45.45 16 2 C 0.02 1.06 3.85 84.91 0.33 1.38 16 3 Si 0.99 36.69 29.56 68.60 2.03 38.72 16 4 H -0.27 -9.84 7.11 99.48 0.71 -9.13 16 5 H -0.28 -10.67 7.11 99.48 0.71 -9.96 16 6 H -0.25 -8.57 7.11 99.48 0.71 -7.86 16 7 C -0.39 -18.88 7.40 84.02 0.62 -18.26 16 8 H 0.11 4.69 7.78 -2.91 -0.02 4.67 16 9 N -0.39 -20.54 2.66 -458.90 -1.22 -21.76 16 10 C 0.47 24.12 7.60 87.66 0.67 24.78 16 11 O -0.58 -32.27 13.03 15.99 0.21 -32.07 16 12 C 0.08 3.38 5.11 71.24 0.36 3.74 16 13 O -0.37 -14.94 10.13 -129.99 -1.32 -16.26 16 14 C -0.01 -0.40 6.44 30.59 0.20 -0.20 16 15 C -0.18 -4.14 10.48 30.60 0.32 -3.82 16 16 C -0.18 -4.28 10.48 30.59 0.32 -3.96 16 17 C 0.16 8.55 5.71 38.22 0.22 8.77 16 18 C -0.21 -10.69 8.96 22.40 0.20 -10.48 16 19 C -0.12 -4.89 10.04 22.25 0.22 -4.67 16 20 C -0.16 -6.17 10.04 22.30 0.22 -5.95 16 21 C -0.12 -4.77 10.04 22.25 0.22 -4.54 16 22 C -0.12 -5.92 7.86 22.41 0.18 -5.75 16 23 H 0.28 13.58 8.32 -92.71 -0.77 12.81 16 24 H 0.09 3.42 8.05 -2.39 -0.02 3.40 16 25 H 0.09 3.39 8.08 -2.38 -0.02 3.37 16 26 H 0.13 3.11 7.93 -2.39 -0.02 3.09 16 27 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 28 H 0.13 2.15 8.14 -2.39 -0.02 2.13 16 29 H 0.13 2.25 8.14 -2.39 -0.02 2.23 16 30 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 31 H 0.14 7.78 4.75 -42.81 -0.20 7.58 16 32 H 0.13 4.68 8.06 -2.91 -0.02 4.66 16 33 H 0.14 4.17 8.06 -2.91 -0.02 4.14 16 34 H 0.14 4.54 8.06 -2.91 -0.02 4.52 16 35 H 0.11 5.49 6.03 -2.91 -0.02 5.48 16 Total: -1.00 -65.11 300.01 4.93 -60.18 By element: Atomic # 1 Polarization: 34.70 SS G_CDS: 0.90 Total: 35.60 kcal Atomic # 6 Polarization: -23.04 SS G_CDS: 4.08 Total: -18.96 kcal Atomic # 7 Polarization: -66.25 SS G_CDS: -0.97 Total: -67.21 kcal Atomic # 8 Polarization: -47.21 SS G_CDS: -1.11 Total: -48.32 kcal Atomic # 14 Polarization: 36.69 SS G_CDS: 2.03 Total: 38.72 kcal Total: -65.11 4.93 -60.18 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888564143.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.352 kcal (2) G-P(sol) polarization free energy of solvation -65.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds