Wall clock time and date at job start Mon Mar 30 2020 00:23:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.31001 * 119.99946 * 2 1 4 4 C 1.50703 * 119.99594 * 179.97438 * 3 2 1 5 5 H 1.08998 * 109.47240 * 244.99845 * 4 3 2 6 6 O 1.42898 * 109.47207 * 5.00639 * 4 3 2 7 7 C 1.50703 * 109.46725 * 125.00537 * 4 3 2 8 8 O 1.21290 * 119.99657 * 245.00102 * 7 4 3 9 9 N 1.34769 * 120.00185 * 64.99420 * 7 4 3 10 10 C 1.39940 * 120.00035 * 174.89189 * 9 7 4 11 11 C 1.39285 * 119.95045 * 325.53222 * 10 9 7 12 12 C 1.38485 * 120.43205 * 179.75881 * 11 10 9 13 13 C 1.37688 * 120.31620 * 0.51475 * 12 11 10 14 14 C 1.40736 * 119.88865 * 359.74186 * 13 12 11 15 15 C 1.41409 * 120.21288 * 180.02562 * 14 13 12 16 16 H 1.07998 * 120.00131 * 205.17105 * 15 14 13 17 17 C 1.39938 * 119.99660 * 25.17385 * 15 14 13 18 18 N 1.30831 * 120.00164 * 16.79714 * 17 15 14 19 19 Si 1.86797 * 119.99865 * 196.79930 * 17 15 14 20 20 H 1.48503 * 109.47251 * 59.99799 * 19 17 15 21 21 H 1.48502 * 109.47172 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47115 * 299.99756 * 19 17 15 23 23 C 1.38241 * 119.94265 * 145.80379 * 10 9 7 24 24 H 1.09001 * 109.46790 * 60.00133 * 1 2 3 25 25 H 1.08994 * 109.47129 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47291 * 299.99861 * 1 2 3 27 27 H 1.08004 * 119.99548 * 180.02562 * 2 1 3 28 28 H 1.07997 * 119.99854 * 0.02562 * 3 2 1 29 29 H 0.96696 * 113.99916 * 59.99254 * 6 4 3 30 30 H 0.97005 * 120.00388 * 354.90442 * 9 7 4 31 31 H 1.08007 * 119.78375 * 0.02562 * 11 10 9 32 32 H 1.08001 * 119.84192 * 180.26066 * 12 11 10 33 33 H 1.08004 * 120.05095 * 179.76492 * 13 12 11 34 34 H 0.96998 * 119.99892 * 179.97438 * 18 17 15 35 35 H 1.07997 * 120.16577 * 359.96079 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1621 1.1345 0.0000 4 6 3.6691 1.1344 0.0006 5 1 4.0321 1.5689 0.9320 6 8 4.1454 -0.2077 -0.1165 7 6 4.1718 1.9492 -1.1632 8 8 4.7928 1.4123 -2.0561 9 7 3.9314 3.2744 -1.2120 10 6 4.4880 4.0494 -2.2356 11 6 5.7497 3.7372 -2.7365 12 6 6.3079 4.4943 -3.7528 13 6 5.6255 5.5714 -4.2723 14 6 4.3521 5.9022 -3.7725 15 6 3.6449 7.0066 -4.3013 16 1 2.9032 7.5111 -3.6999 17 6 3.9061 7.4458 -5.6041 18 7 4.5410 6.6671 -6.4420 19 14 3.3485 9.1441 -6.1466 20 1 3.9864 10.1729 -5.2864 21 1 3.7432 9.3664 -7.5608 22 1 1.8719 9.2428 -6.0240 23 6 3.7872 5.1270 -2.7441 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 2.0470 -0.9354 -0.0004 28 1 1.6220 2.0698 0.0004 29 1 3.8603 -0.6572 -0.9238 30 1 3.3726 3.6911 -0.5374 31 1 6.2943 2.8965 -2.3326 32 1 7.2850 4.2412 -4.1370 33 1 6.0665 6.1613 -5.0622 34 1 4.7217 6.9714 -7.3451 35 1 2.8106 5.3722 -2.3539 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001140935829.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:23:21 Heat of formation + Delta-G solvation = -55.080331 kcal Electronic energy + Delta-G solvation = -18655.948457 eV Core-core repulsion = 15618.790751 eV Total energy + Delta-G solvation = -3037.157707 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 261.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.09823 -37.84141 -36.65444 -34.63300 -34.06919 -33.10006 -29.88155 -29.83146 -27.88606 -25.38050 -25.15032 -21.65165 -20.96087 -19.98154 -19.55721 -17.88120 -17.49220 -16.76734 -15.87495 -15.44865 -14.99914 -14.56931 -14.24426 -14.12304 -13.51704 -13.33675 -13.00766 -12.89962 -12.64573 -12.28240 -11.98570 -11.68682 -11.45094 -11.21680 -11.16964 -10.98666 -10.86821 -10.47179 -10.22221 -9.68329 -9.61606 -9.28200 -9.09863 -8.81098 -7.48734 -6.96228 -6.73898 -4.38152 1.88012 2.51780 2.81103 3.06136 3.08255 3.15751 3.32127 3.54419 3.92757 4.18071 4.54778 4.64475 4.90140 4.95083 5.19012 5.26793 5.43488 5.52511 5.66729 5.74793 6.27101 6.38594 6.50404 6.52546 6.70801 6.90392 6.97529 7.02348 7.23536 7.37310 7.56877 7.64562 7.94771 8.01147 8.11188 8.28279 8.52578 8.65555 8.87416 8.95014 10.19570 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.028414 B = 0.004348 C = 0.003933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.187233 B = 6438.483312 C = 7116.738415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.139 4.139 3 C -0.204 4.204 4 C 0.126 3.874 5 H 0.132 0.868 6 O -0.537 6.537 7 C 0.483 3.517 8 O -0.515 6.515 9 N -0.662 5.662 10 C 0.150 3.850 11 C -0.227 4.227 12 C -0.095 4.095 13 C -0.167 4.167 14 C 0.122 3.878 15 C -0.466 4.466 16 H 0.077 0.923 17 C 0.077 3.923 18 N -0.794 5.794 19 Si 0.909 3.091 20 H -0.264 1.264 21 H -0.278 1.278 22 H -0.266 1.266 23 C -0.243 4.243 24 H 0.068 0.932 25 H 0.062 0.938 26 H 0.067 0.933 27 H 0.118 0.882 28 H 0.123 0.877 29 H 0.384 0.616 30 H 0.400 0.600 31 H 0.100 0.900 32 H 0.092 0.908 33 H 0.119 0.881 34 H 0.281 0.719 35 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.637 -6.745 10.145 13.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.157 4.157 3 C -0.222 4.222 4 C 0.063 3.937 5 H 0.149 0.851 6 O -0.343 6.343 7 C 0.268 3.732 8 O -0.390 6.390 9 N -0.307 5.307 10 C 0.059 3.941 11 C -0.248 4.248 12 C -0.114 4.114 13 C -0.186 4.186 14 C 0.119 3.881 15 C -0.496 4.496 16 H 0.095 0.905 17 C -0.141 4.141 18 N -0.419 5.419 19 Si 0.733 3.267 20 H -0.188 1.188 21 H -0.203 1.203 22 H -0.191 1.191 23 C -0.265 4.265 24 H 0.087 0.913 25 H 0.081 0.919 26 H 0.086 0.914 27 H 0.136 0.864 28 H 0.141 0.859 29 H 0.233 0.767 30 H 0.234 0.766 31 H 0.118 0.882 32 H 0.110 0.890 33 H 0.137 0.863 34 H 0.092 0.908 35 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -4.831 -7.066 9.843 13.044 hybrid contribution -0.849 0.888 -0.592 1.364 sum -5.680 -6.178 9.251 12.491 Atomic orbital electron populations 1.20881 0.92671 1.02538 1.02305 1.22888 0.96388 0.98501 0.97926 1.23291 0.94871 0.99703 1.04375 1.20743 0.91447 0.83972 0.97552 0.85092 1.86550 1.77317 1.23866 1.46519 1.21340 0.80760 0.82886 0.88204 1.90743 1.39613 1.70724 1.37909 1.43495 1.50658 1.07458 1.29047 1.17446 0.92813 0.92879 0.90987 1.20298 0.95694 1.04327 1.04448 1.20591 0.98316 0.96101 0.96407 1.21382 0.95270 0.99013 1.02981 1.17368 0.90857 0.90668 0.89184 1.19482 1.19831 1.12182 0.98056 0.90510 1.25891 0.93496 0.98349 0.96384 1.69824 1.31370 1.35201 1.05527 0.86363 0.79929 0.82403 0.77967 1.18826 1.20347 1.19080 1.20698 0.99438 1.00223 1.06152 0.91318 0.91897 0.91440 0.86378 0.85929 0.76673 0.76574 0.88223 0.88999 0.86276 0.90802 0.88697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.02 10.17 36.01 0.37 -0.65 16 2 C -0.14 -1.34 9.46 -36.02 -0.34 -1.68 16 3 C -0.20 -2.16 9.06 -36.02 -0.33 -2.49 16 4 C 0.13 1.57 3.93 -29.03 -0.11 1.46 16 5 H 0.13 1.37 8.14 -51.93 -0.42 0.95 16 6 O -0.54 -7.07 11.84 -55.09 -0.65 -7.72 16 7 C 0.48 8.33 6.88 -10.99 -0.08 8.25 16 8 O -0.51 -11.16 14.07 -14.31 -0.20 -11.36 16 9 N -0.66 -11.57 5.29 -9.91 -0.05 -11.63 16 10 C 0.15 3.40 6.25 -83.77 -0.52 2.88 16 11 C -0.23 -5.47 8.66 -39.10 -0.34 -5.81 16 12 C -0.10 -2.34 10.02 -39.69 -0.40 -2.74 16 13 C -0.17 -4.40 8.69 -38.84 -0.34 -4.74 16 14 C 0.12 3.25 5.57 -106.85 -0.59 2.66 16 15 C -0.47 -12.23 9.05 -37.74 -0.34 -12.57 16 16 H 0.08 1.91 7.90 -52.49 -0.41 1.50 16 17 C 0.08 1.91 5.16 -17.34 -0.09 1.82 16 18 N -0.79 -20.64 10.94 55.55 0.61 -20.04 16 19 Si 0.91 18.50 29.59 -169.99 -5.03 13.47 16 20 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 21 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 22 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 23 C -0.24 -5.86 9.70 -38.68 -0.38 -6.24 16 24 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.12 1.09 6.56 -52.48 -0.34 0.74 16 28 H 0.12 1.17 8.05 -52.49 -0.42 0.75 16 29 H 0.38 4.42 8.03 45.56 0.37 4.78 16 30 H 0.40 5.41 8.79 -40.82 -0.36 5.05 16 31 H 0.10 2.39 6.48 -52.48 -0.34 2.05 16 32 H 0.09 2.04 8.06 -52.49 -0.42 1.62 16 33 H 0.12 3.22 6.17 -52.48 -0.32 2.89 16 34 H 0.28 6.66 8.30 -40.82 -0.34 6.33 16 35 H 0.09 2.09 8.06 -52.49 -0.42 1.67 16 LS Contribution 304.59 15.07 4.59 4.59 Total: -1.00 -31.22 304.59 -7.74 -38.95 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: -3.51 Total: 13.58 kcal Atomic # 6 Polarization: -16.36 SS G_CDS: -3.49 Total: -19.85 kcal Atomic # 7 Polarization: -32.22 SS G_CDS: 0.56 Total: -31.66 kcal Atomic # 8 Polarization: -18.23 SS G_CDS: -0.85 Total: -19.08 kcal Atomic # 14 Polarization: 18.50 SS G_CDS: -5.03 Total: 13.47 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -31.22 -7.74 -38.95 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140935829.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.127 kcal (2) G-P(sol) polarization free energy of solvation -31.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds