Wall clock time and date at job start Sun Mar 29 2020 23:37:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86796 * 120.00217 * 2 1 4 4 H 1.48498 * 109.47589 * 240.00414 * 3 2 1 5 5 H 1.48507 * 109.47029 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47450 * 120.00236 * 3 2 1 7 7 C 1.39935 * 119.99735 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99845 * 162.60953 * 7 2 1 9 9 C 1.41436 * 120.00306 * 342.60817 * 7 2 1 10 10 C 1.40789 * 120.18022 * 154.91137 * 9 7 2 11 11 C 1.37707 * 120.03792 * 180.02562 * 10 9 7 12 12 C 1.38371 * 120.41324 * 359.95514 * 11 10 9 13 13 C 1.39877 * 120.36049 * 0.04140 * 12 11 10 14 14 C 1.47890 * 120.02467 * 180.25076 * 13 12 11 15 15 O 1.21549 * 119.99611 * 179.72401 * 14 13 12 16 16 N 1.34771 * 119.99945 * 359.72969 * 14 13 12 17 17 C 1.46505 * 119.99671 * 179.97438 * 16 14 13 18 18 C 1.50703 * 109.46925 * 179.97438 * 17 16 14 19 19 C 1.31004 * 119.99632 * 124.99978 * 18 17 16 20 20 C 1.50703 * 119.99632 * 179.97438 * 19 18 17 21 21 O 1.42901 * 109.47100 * 134.99664 * 20 19 18 22 22 C 1.39030 * 119.94769 * 359.97438 * 13 12 11 23 23 H 0.97000 * 119.99515 * 359.97438 * 1 2 3 24 24 H 1.08001 * 119.97651 * 0.02562 * 10 9 7 25 25 H 1.08002 * 119.79442 * 179.97438 * 11 10 9 26 26 H 1.08005 * 119.81763 * 180.02562 * 12 11 10 27 27 H 0.97001 * 120.00471 * 359.97438 * 16 14 13 28 28 H 1.09000 * 109.47382 * 299.99395 * 17 16 14 29 29 H 1.08998 * 109.47027 * 60.00449 * 17 16 14 30 30 H 1.08002 * 120.00100 * 305.00327 * 18 17 16 31 31 H 1.07997 * 120.00130 * 359.97438 * 19 18 17 32 32 H 1.09000 * 109.47211 * 254.99983 * 20 19 18 33 33 H 1.09006 * 109.47371 * 15.00327 * 20 19 18 34 34 H 0.96695 * 114.00316 * 179.97438 * 21 20 19 35 35 H 1.08006 * 120.20289 * 179.97438 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0960 1.6964 -1.2125 5 1 1.2773 2.7465 0.0006 6 1 3.0961 1.6963 1.2124 7 6 2.0079 -1.2119 -0.0005 8 1 3.0509 -1.2332 -0.2801 9 6 1.3492 -2.4089 0.3650 10 6 1.8187 -3.6485 -0.1095 11 6 1.1749 -4.8121 0.2478 12 6 0.0656 -4.7736 1.0740 13 6 -0.4154 -3.5514 1.5553 14 6 -1.5982 -3.5193 2.4424 15 8 -2.0127 -2.4574 2.8644 16 7 -2.2165 -4.6674 2.7830 17 6 -3.3880 -4.6355 3.6622 18 6 -3.8868 -6.0400 3.8855 19 6 -4.0248 -6.5000 5.1043 20 6 -4.5242 -7.9042 5.3275 21 8 -3.7192 -8.5438 6.3200 22 6 0.2230 -2.3674 1.2038 23 1 -0.4849 0.8401 0.0004 24 1 2.6844 -3.6867 -0.7542 25 1 1.5382 -5.7608 -0.1188 26 1 -0.4318 -5.6921 1.3486 27 1 -1.8859 -5.5148 2.4460 28 1 -3.1125 -4.1911 4.6186 29 1 -4.1745 -4.0405 3.1981 30 1 -4.1304 -6.6672 3.0407 31 1 -3.7808 -5.8729 5.9490 32 1 -5.5601 -7.8721 5.6652 33 1 -4.4634 -8.4642 4.3943 34 1 -3.9843 -9.4530 6.5154 35 1 -0.1451 -1.4214 1.5727 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001146720621.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:37:14 Heat of formation + Delta-G solvation = -57.636271 kcal Electronic energy + Delta-G solvation = -18169.980116 eV Core-core repulsion = 15132.711575 eV Total energy + Delta-G solvation = -3037.268540 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 261.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.20894 -37.55221 -37.00608 -35.39303 -33.75747 -32.88789 -30.25512 -29.42977 -27.80936 -25.31190 -24.04417 -21.98682 -20.92028 -20.22045 -19.31632 -17.85055 -17.45209 -16.38911 -15.55717 -15.30854 -15.23543 -14.87802 -14.54534 -14.27690 -13.64268 -13.25103 -13.08808 -12.67430 -12.56972 -12.45871 -12.15469 -11.62244 -11.22573 -11.14551 -11.07299 -10.73577 -10.64387 -10.49514 -10.03368 -9.68498 -9.53601 -9.20071 -8.96836 -8.63088 -7.61960 -7.50749 -6.78659 -4.40501 1.78472 2.22057 2.83317 3.08520 3.10298 3.17719 3.81989 3.88149 3.93541 4.05020 4.65376 4.72633 4.79942 5.04852 5.13461 5.32184 5.58927 5.64584 5.65723 5.93305 6.10526 6.28382 6.36019 6.46381 6.72562 6.86363 6.99816 7.02883 7.22287 7.28920 7.39028 7.71103 7.76821 7.93470 8.10430 8.20146 8.51448 8.81223 8.84447 8.95574 10.16261 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.033087 B = 0.003777 C = 0.003491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.058573 B = 7412.048614 C = 8018.363869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.784 5.784 2 C 0.073 3.927 3 Si 0.911 3.089 4 H -0.265 1.265 5 H -0.277 1.277 6 H -0.263 1.263 7 C -0.461 4.461 8 H 0.081 0.919 9 C 0.099 3.901 10 C -0.211 4.211 11 C -0.098 4.098 12 C -0.218 4.218 13 C -0.128 4.128 14 C 0.564 3.436 15 O -0.547 6.547 16 N -0.734 5.734 17 C 0.150 3.850 18 C -0.155 4.155 19 C -0.145 4.145 20 C 0.105 3.895 21 O -0.570 6.570 22 C -0.092 4.092 23 H 0.285 0.715 24 H 0.096 0.904 25 H 0.093 0.907 26 H 0.090 0.910 27 H 0.400 0.600 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.117 0.883 31 H 0.119 0.881 32 H 0.056 0.944 33 H 0.052 0.948 34 H 0.380 0.620 35 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.413 -11.801 6.094 15.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.408 5.408 2 C -0.146 4.146 3 Si 0.735 3.265 4 H -0.190 1.190 5 H -0.202 1.202 6 H -0.187 1.187 7 C -0.490 4.490 8 H 0.099 0.901 9 C 0.096 3.904 10 C -0.231 4.231 11 C -0.116 4.116 12 C -0.238 4.238 13 C -0.131 4.131 14 C 0.354 3.646 15 O -0.425 6.425 16 N -0.388 5.388 17 C 0.026 3.974 18 C -0.173 4.173 19 C -0.164 4.164 20 C 0.028 3.972 21 O -0.375 6.375 22 C -0.112 4.112 23 H 0.096 0.904 24 H 0.114 0.886 25 H 0.111 0.889 26 H 0.108 0.892 27 H 0.236 0.764 28 H 0.087 0.913 29 H 0.092 0.908 30 H 0.134 0.866 31 H 0.137 0.863 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.227 0.773 35 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -7.641 -10.267 6.375 14.298 hybrid contribution 0.045 -0.300 -0.272 0.408 sum -7.596 -10.567 6.102 14.374 Atomic orbital electron populations 1.69781 1.07572 1.29866 1.33628 1.25963 0.94783 1.01539 0.92317 0.86316 0.80092 0.80087 0.79962 1.18978 1.20232 1.18722 1.19555 0.98041 0.91006 1.40374 0.90105 1.17597 0.91200 0.92466 0.89096 1.21108 1.03487 0.92822 1.05698 1.20433 0.96051 0.96738 0.98406 1.20349 1.01391 0.94663 1.07370 1.19463 0.96606 0.95366 1.01664 1.18869 0.83198 0.82723 0.79776 1.90695 1.66381 1.30147 1.55243 1.45918 1.31160 1.09978 1.51775 1.20213 0.88497 0.93489 0.95151 1.22932 0.99699 0.97396 0.97280 1.22673 1.00135 0.95804 0.97744 1.21145 0.93517 0.91412 0.91131 1.86536 1.58859 1.31547 1.60599 1.21634 0.96432 0.96397 0.96739 0.90389 0.88597 0.88887 0.89220 0.76431 0.91319 0.90834 0.86554 0.86304 0.92637 0.92954 0.77295 0.84861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.95 10.97 55.55 0.61 -20.34 16 2 C 0.07 1.86 5.14 -17.35 -0.09 1.77 16 3 Si 0.91 18.93 29.59 -169.99 -5.03 13.90 16 4 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 5 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 6 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 7 C -0.46 -12.20 9.05 -37.73 -0.34 -12.54 16 8 H 0.08 2.02 7.90 -52.49 -0.41 1.61 16 9 C 0.10 2.64 5.57 -106.87 -0.59 2.05 16 10 C -0.21 -5.06 9.78 -38.81 -0.38 -5.44 16 11 C -0.10 -2.11 10.01 -39.73 -0.40 -2.51 16 12 C -0.22 -4.64 9.55 -38.92 -0.37 -5.01 16 13 C -0.13 -3.07 5.87 -105.04 -0.62 -3.68 16 14 C 0.56 12.61 7.77 -12.31 -0.10 12.52 16 15 O -0.55 -13.98 16.33 5.32 0.09 -13.89 16 16 N -0.73 -12.50 5.50 -62.41 -0.34 -12.84 16 17 C 0.15 2.14 6.11 -5.19 -0.03 2.11 16 18 C -0.15 -1.67 9.23 -36.03 -0.33 -2.00 16 19 C -0.14 -1.49 9.50 -36.03 -0.34 -1.83 16 20 C 0.11 0.86 7.46 36.01 0.27 1.13 16 21 O -0.57 -5.23 13.64 -35.23 -0.48 -5.71 16 22 C -0.09 -2.48 8.23 -38.44 -0.32 -2.80 16 23 H 0.28 7.01 8.30 -40.82 -0.34 6.67 16 24 H 0.10 2.13 8.06 -52.49 -0.42 1.71 16 25 H 0.09 1.69 8.06 -52.49 -0.42 1.27 16 26 H 0.09 1.58 6.38 -52.48 -0.33 1.24 16 27 H 0.40 5.94 6.48 -40.82 -0.26 5.67 16 28 H 0.07 1.02 7.79 -51.93 -0.40 0.62 16 29 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.12 1.07 7.90 -52.49 -0.41 0.65 16 31 H 0.12 1.29 7.84 -52.49 -0.41 0.88 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.05 0.36 7.86 -51.93 -0.41 -0.05 16 34 H 0.38 1.54 9.12 45.56 0.42 1.96 16 35 H 0.13 3.89 5.77 -52.48 -0.30 3.59 16 LS Contribution 308.36 15.07 4.65 4.65 Total: -1.00 -31.78 308.36 -7.52 -39.30 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: -3.37 Total: 11.18 kcal Atomic # 6 Polarization: -12.60 SS G_CDS: -3.64 Total: -16.24 kcal Atomic # 7 Polarization: -33.45 SS G_CDS: 0.27 Total: -33.19 kcal Atomic # 8 Polarization: -19.21 SS G_CDS: -0.39 Total: -19.60 kcal Atomic # 14 Polarization: 18.93 SS G_CDS: -5.03 Total: 13.90 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -31.78 -7.52 -39.30 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146720621.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.336 kcal (2) G-P(sol) polarization free energy of solvation -31.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds