Wall clock time and date at job start Sun Mar 29 2020 23:37:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86796 * 120.00217 * 2 1 4 4 H 1.48498 * 109.47589 * 240.00414 * 3 2 1 5 5 H 1.48507 * 109.47029 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47450 * 120.00236 * 3 2 1 7 7 C 1.39935 * 119.99735 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99845 * 162.60953 * 7 2 1 9 9 C 1.41436 * 120.00306 * 342.60817 * 7 2 1 10 10 C 1.40789 * 120.18022 * 154.91137 * 9 7 2 11 11 C 1.37707 * 120.03792 * 180.02562 * 10 9 7 12 12 C 1.38371 * 120.41324 * 359.95514 * 11 10 9 13 13 C 1.39877 * 120.36049 * 0.04140 * 12 11 10 14 14 C 1.47890 * 120.02467 * 180.25076 * 13 12 11 15 15 O 1.21549 * 119.99611 * 179.72401 * 14 13 12 16 16 N 1.34771 * 119.99945 * 359.72969 * 14 13 12 17 17 C 1.46505 * 119.99671 * 179.97438 * 16 14 13 18 18 C 1.50703 * 109.46925 * 179.97438 * 17 16 14 19 19 C 1.31004 * 119.99632 * 124.99978 * 18 17 16 20 20 C 1.50703 * 119.99632 * 179.97438 * 19 18 17 21 21 O 1.42901 * 109.47100 * 134.99664 * 20 19 18 22 22 C 1.39030 * 119.94769 * 359.97438 * 13 12 11 23 23 H 0.97000 * 119.99515 * 359.97438 * 1 2 3 24 24 H 1.08001 * 119.97651 * 0.02562 * 10 9 7 25 25 H 1.08002 * 119.79442 * 179.97438 * 11 10 9 26 26 H 1.08005 * 119.81763 * 180.02562 * 12 11 10 27 27 H 0.97001 * 120.00471 * 359.97438 * 16 14 13 28 28 H 1.09000 * 109.47382 * 299.99395 * 17 16 14 29 29 H 1.08998 * 109.47027 * 60.00449 * 17 16 14 30 30 H 1.08002 * 120.00100 * 305.00327 * 18 17 16 31 31 H 1.07997 * 120.00130 * 359.97438 * 19 18 17 32 32 H 1.09000 * 109.47211 * 254.99983 * 20 19 18 33 33 H 1.09006 * 109.47371 * 15.00327 * 20 19 18 34 34 H 0.96695 * 114.00316 * 179.97438 * 21 20 19 35 35 H 1.08006 * 120.20289 * 179.97438 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0960 1.6964 -1.2125 5 1 1.2773 2.7465 0.0006 6 1 3.0961 1.6963 1.2124 7 6 2.0079 -1.2119 -0.0005 8 1 3.0509 -1.2332 -0.2801 9 6 1.3492 -2.4089 0.3650 10 6 1.8187 -3.6485 -0.1095 11 6 1.1749 -4.8121 0.2478 12 6 0.0656 -4.7736 1.0740 13 6 -0.4154 -3.5514 1.5553 14 6 -1.5982 -3.5193 2.4424 15 8 -2.0127 -2.4574 2.8644 16 7 -2.2165 -4.6674 2.7830 17 6 -3.3880 -4.6355 3.6622 18 6 -3.8868 -6.0400 3.8855 19 6 -4.0248 -6.5000 5.1043 20 6 -4.5242 -7.9042 5.3275 21 8 -3.7192 -8.5438 6.3200 22 6 0.2230 -2.3674 1.2038 23 1 -0.4849 0.8401 0.0004 24 1 2.6844 -3.6867 -0.7542 25 1 1.5382 -5.7608 -0.1188 26 1 -0.4318 -5.6921 1.3486 27 1 -1.8859 -5.5148 2.4460 28 1 -3.1125 -4.1911 4.6186 29 1 -4.1745 -4.0405 3.1981 30 1 -4.1304 -6.6672 3.0407 31 1 -3.7808 -5.8729 5.9490 32 1 -5.5601 -7.8721 5.6652 33 1 -4.4634 -8.4642 4.3943 34 1 -3.9843 -9.4530 6.5154 35 1 -0.1451 -1.4214 1.5727 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001146720621.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:37:13 Heat of formation + Delta-G solvation = -80.941852 kcal Electronic energy + Delta-G solvation = -18170.990721 eV Core-core repulsion = 15132.711575 eV Total energy + Delta-G solvation = -3038.279146 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 261.115 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.92065 -38.89534 -38.17290 -36.60703 -35.60813 -34.14749 -32.01971 -31.28219 -28.91987 -27.17170 -25.19705 -23.55908 -22.76053 -21.48649 -20.63101 -19.49586 -18.27858 -17.94749 -17.17971 -16.85702 -16.48082 -16.38497 -15.83212 -15.50815 -15.17918 -15.04576 -14.37770 -14.28078 -14.20756 -13.58898 -13.47726 -13.08800 -12.94987 -12.80474 -12.52404 -12.20873 -12.02960 -11.92124 -11.51273 -11.30029 -11.06965 -10.87106 -10.35476 -10.01649 -9.47176 -9.38691 -8.66432 -6.38556 0.36713 0.92770 1.01147 1.36209 1.48023 1.50639 2.08237 2.19442 2.40900 2.78617 3.37452 3.69414 3.95313 4.02979 4.07641 4.35297 4.41247 4.49335 4.56662 4.59424 4.63027 4.75285 4.91583 5.08599 5.18903 5.30463 5.36736 5.51543 5.54140 5.68345 5.86095 5.92043 6.04930 6.28260 6.50277 6.67386 6.87612 6.92838 6.94387 7.27817 8.30451 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.033087 B = 0.003777 C = 0.003491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.058573 B = 7412.048614 C = 8018.363869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.029 3.971 3 Si 0.984 3.016 4 H -0.252 1.252 5 H -0.272 1.272 6 H -0.261 1.261 7 C -0.499 4.499 8 H 0.085 0.915 9 C 0.067 3.933 10 C -0.216 4.216 11 C -0.095 4.095 12 C -0.197 4.197 13 C -0.140 4.140 14 C 0.559 3.441 15 O -0.590 6.590 16 N -0.710 5.710 17 C 0.147 3.853 18 C -0.156 4.156 19 C -0.140 4.140 20 C 0.105 3.895 21 O -0.595 6.595 22 C -0.131 4.131 23 H 0.286 0.714 24 H 0.110 0.890 25 H 0.140 0.860 26 H 0.137 0.863 27 H 0.414 0.586 28 H 0.058 0.942 29 H 0.068 0.932 30 H 0.142 0.858 31 H 0.106 0.894 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.401 0.599 35 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.559 -14.734 6.056 17.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.186 4.186 3 Si 0.804 3.196 4 H -0.175 1.175 5 H -0.197 1.197 6 H -0.185 1.185 7 C -0.528 4.528 8 H 0.103 0.897 9 C 0.065 3.935 10 C -0.236 4.236 11 C -0.113 4.113 12 C -0.217 4.217 13 C -0.143 4.143 14 C 0.349 3.651 15 O -0.472 6.472 16 N -0.363 5.363 17 C 0.024 3.976 18 C -0.174 4.174 19 C -0.159 4.159 20 C 0.028 3.972 21 O -0.405 6.405 22 C -0.152 4.152 23 H 0.097 0.903 24 H 0.128 0.872 25 H 0.158 0.842 26 H 0.155 0.845 27 H 0.252 0.748 28 H 0.076 0.924 29 H 0.086 0.914 30 H 0.159 0.841 31 H 0.124 0.876 32 H 0.093 0.907 33 H 0.089 0.911 34 H 0.252 0.748 35 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -7.798 -13.289 6.340 16.661 hybrid contribution 0.020 0.359 -0.174 0.399 sum -7.778 -12.930 6.166 16.300 Atomic orbital electron populations 1.69886 1.09263 1.30667 1.35370 1.26870 0.95430 1.05006 0.91324 0.85228 0.78684 0.75406 0.80283 1.17529 1.19679 1.18549 1.19848 0.98460 0.92158 1.42337 0.89714 1.17949 0.91774 0.93990 0.89809 1.21430 1.03910 0.92817 1.05427 1.20935 0.95304 0.97753 0.97338 1.20870 1.00621 0.95125 1.05075 1.19776 0.97037 0.95650 1.01846 1.18787 0.83170 0.83513 0.79663 1.90669 1.67530 1.32099 1.56923 1.45725 1.30986 1.08837 1.50750 1.20345 0.87187 0.96206 0.93852 1.22731 1.00832 0.95441 0.98392 1.22879 0.98776 0.97095 0.97150 1.21204 0.94094 0.89941 0.91991 1.86469 1.59615 1.33429 1.60960 1.21440 0.98335 0.96355 0.99070 0.90306 0.87234 0.84204 0.84505 0.74761 0.92405 0.91374 0.84060 0.87573 0.90683 0.91073 0.74833 0.88421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -46.78 10.97 21.82 0.24 -46.54 16 2 C 0.03 1.51 5.14 85.25 0.44 1.95 16 3 Si 0.98 40.13 29.59 68.60 2.03 42.16 16 4 H -0.25 -9.60 7.11 99.48 0.71 -8.90 16 5 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 6 H -0.26 -10.45 7.11 99.48 0.71 -9.75 16 7 C -0.50 -27.49 9.05 23.47 0.21 -27.27 16 8 H 0.08 4.38 7.90 -2.91 -0.02 4.36 16 9 C 0.07 3.69 5.57 -21.32 -0.12 3.57 16 10 C -0.22 -10.17 9.78 22.77 0.22 -9.94 16 11 C -0.10 -3.79 10.01 22.18 0.22 -3.57 16 12 C -0.20 -7.81 9.55 22.70 0.22 -7.60 16 13 C -0.14 -6.75 5.87 -20.13 -0.12 -6.86 16 14 C 0.56 25.24 7.77 86.80 0.67 25.91 16 15 O -0.59 -31.57 16.33 -3.87 -0.06 -31.63 16 16 N -0.71 -23.06 5.50 -469.66 -2.58 -25.64 16 17 C 0.15 4.04 6.11 85.63 0.52 4.57 16 18 C -0.16 -2.94 9.23 25.64 0.24 -2.70 16 19 C -0.14 -2.54 9.50 25.64 0.24 -2.30 16 20 C 0.10 1.35 7.46 71.24 0.53 1.88 16 21 O -0.60 -9.24 13.64 -148.98 -2.03 -11.27 16 22 C -0.13 -7.43 8.23 23.01 0.19 -7.25 16 23 H 0.29 14.98 8.30 -92.71 -0.77 14.21 16 24 H 0.11 4.74 8.06 -2.91 -0.02 4.71 16 25 H 0.14 4.29 8.06 -2.91 -0.02 4.26 16 26 H 0.14 4.08 6.38 -2.91 -0.02 4.06 16 27 H 0.41 10.85 6.48 -92.71 -0.60 10.25 16 28 H 0.06 1.73 7.79 -2.39 -0.02 1.71 16 29 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.14 2.01 7.90 -2.91 -0.02 1.98 16 31 H 0.11 2.18 7.84 -2.91 -0.02 2.16 16 32 H 0.08 0.69 8.14 -2.39 -0.02 0.68 16 33 H 0.07 0.67 7.86 -2.38 -0.02 0.65 16 34 H 0.40 2.08 9.12 -74.06 -0.68 1.40 16 35 H 0.10 6.16 5.77 -2.91 -0.02 6.14 16 Total: -1.00 -73.58 308.36 0.91 -72.66 By element: Atomic # 1 Polarization: 30.03 SS G_CDS: -0.15 Total: 29.88 kcal Atomic # 6 Polarization: -33.09 SS G_CDS: 3.47 Total: -29.62 kcal Atomic # 7 Polarization: -69.84 SS G_CDS: -2.34 Total: -72.19 kcal Atomic # 8 Polarization: -40.81 SS G_CDS: -2.10 Total: -42.90 kcal Atomic # 14 Polarization: 40.13 SS G_CDS: 2.03 Total: 42.16 kcal Total: -73.58 0.91 -72.66 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146720621.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.280 kcal (2) G-P(sol) polarization free energy of solvation -73.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds