Wall clock time and date at job start Mon Mar 30 2020 00:41:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47174 * 2 1 4 4 H 1.08998 * 109.46981 * 56.19759 * 3 2 1 5 5 C 1.50706 * 109.46962 * 176.19771 * 3 2 1 6 6 H 1.07991 * 119.99927 * 121.39121 * 5 3 2 7 7 C 1.37878 * 119.99651 * 301.66545 * 5 3 2 8 8 N 1.31516 * 120.00164 * 359.72979 * 7 5 3 9 9 Si 1.86801 * 119.99762 * 179.72471 * 7 5 3 10 10 H 1.48506 * 109.46918 * 90.00218 * 9 7 5 11 11 H 1.48491 * 109.47161 * 209.99889 * 9 7 5 12 12 H 1.48501 * 109.47171 * 330.00265 * 9 7 5 13 13 N 1.46907 * 109.46823 * 296.19502 * 3 2 1 14 14 C 1.46903 * 110.99336 * 137.27078 * 13 3 2 15 15 C 1.52995 * 108.89062 * 294.40993 * 14 13 3 16 16 C 1.52379 * 108.92256 * 175.74363 * 14 13 3 17 17 C 1.54207 * 112.29457 * 239.25411 * 16 14 13 18 18 S 1.83815 * 102.86388 * 25.04661 * 17 16 14 19 19 O 1.42101 * 109.81688 * 77.68352 * 18 17 16 20 20 O 1.42105 * 109.81149 * 211.99988 * 18 17 16 21 21 C 1.54208 * 108.92785 * 53.08322 * 14 13 3 22 22 H 1.08995 * 109.47223 * 55.47363 * 1 2 3 23 23 H 1.08994 * 109.47240 * 175.47905 * 1 2 3 24 24 H 1.09002 * 109.46458 * 295.47432 * 1 2 3 25 25 H 1.09008 * 109.46745 * 239.99914 * 2 1 3 26 26 H 1.08994 * 109.47198 * 120.00468 * 2 1 3 27 27 H 0.96997 * 119.99618 * 180.02562 * 8 7 5 28 28 H 1.00900 * 110.99715 * 261.21815 * 13 3 2 29 29 H 1.08999 * 109.47546 * 67.13670 * 15 14 13 30 30 H 1.09004 * 109.47363 * 187.13295 * 15 14 13 31 31 H 1.09002 * 109.47671 * 307.12817 * 15 14 13 32 32 H 1.08999 * 108.92880 * 359.97438 * 16 14 13 33 33 H 1.09001 * 108.92830 * 118.64297 * 16 14 13 34 34 H 1.09004 * 110.73603 * 143.38987 * 17 16 14 35 35 H 1.08999 * 110.73473 * 266.69691 * 17 16 14 36 36 H 1.09003 * 110.72858 * 214.04276 * 21 14 13 37 37 H 1.08998 * 110.73463 * 337.34708 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6221 1.9756 0.8539 5 6 3.5442 1.4435 0.0942 6 1 4.1333 1.9132 -0.6794 7 6 4.1681 0.8397 1.1653 8 7 3.4506 0.2676 2.1073 9 14 6.0327 0.8342 1.2782 10 1 6.4877 2.0421 2.0127 11 1 6.4812 -0.3828 2.0011 12 1 6.6115 0.8392 -0.0894 13 7 1.6268 2.1079 -1.2428 14 6 1.1479 3.4708 -0.9760 15 6 -0.1325 3.3915 -0.1423 16 6 0.8329 4.1524 -2.3019 17 6 1.6641 5.4340 -2.5129 18 16 3.1490 5.1348 -1.4716 19 8 4.0340 4.2455 -2.1389 20 8 3.6298 6.3673 -0.9529 21 6 2.2223 4.2301 -0.1716 22 1 -0.3633 0.5824 -0.8466 23 1 -0.3633 -1.0244 -0.0810 24 1 -0.3632 0.4420 0.9278 25 1 1.8933 -0.5139 -0.8901 26 1 1.8934 -0.5139 0.8899 27 1 3.8896 -0.1568 2.8610 28 1 2.3778 2.1140 -1.9166 29 1 0.1019 2.9998 0.8475 30 1 -0.5655 4.3872 -0.0456 31 1 -0.8465 2.7313 -0.6347 32 1 1.0425 3.4576 -3.1152 33 1 -0.2255 4.4122 -2.3233 34 1 1.9434 5.5447 -3.5607 35 1 1.1178 6.3101 -2.1635 36 1 1.7602 4.9270 0.5276 37 1 2.8765 3.5332 0.3522 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255156708.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:41:49 Heat of formation + Delta-G solvation = -70.454322 kcal Electronic energy + Delta-G solvation = -19482.893261 eV Core-core repulsion = 16580.512840 eV Total energy + Delta-G solvation = -2902.380421 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 261.119 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.61396 -36.62320 -35.63453 -34.63465 -31.93586 -30.79907 -29.08869 -27.48958 -26.14374 -24.03337 -22.63101 -19.82537 -18.91978 -18.41175 -16.85444 -16.20598 -15.97632 -15.54157 -15.06713 -14.66787 -13.89998 -13.62448 -13.51433 -12.99643 -12.83472 -12.40285 -12.14938 -11.85330 -11.76811 -11.68017 -11.47306 -11.43034 -11.17729 -11.06546 -10.79219 -10.73117 -10.59084 -10.32318 -10.13568 -9.83467 -9.54342 -9.48281 -8.99163 -8.42522 -7.49114 -6.08748 -4.20413 0.42030 2.84063 3.26200 3.34152 3.41645 3.91966 4.22034 4.36682 4.64229 4.82252 5.03254 5.07597 5.08209 5.26131 5.44826 5.66390 5.72344 5.99675 6.03156 6.20180 6.22645 6.36986 6.49115 6.56933 6.67524 6.70805 7.04044 7.15453 7.42836 7.52133 7.74219 7.98790 8.06498 8.25661 8.56467 8.95066 9.48092 10.91572 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.018176 B = 0.010315 C = 0.007295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.088997 B = 2713.934604 C = 3837.445605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.107 4.107 3 C 0.209 3.791 4 H 0.039 0.961 5 C -0.554 4.554 6 H 0.068 0.932 7 C 0.071 3.929 8 N -0.880 5.880 9 Si 0.882 3.118 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.269 1.269 13 N -0.678 5.678 14 C 0.124 3.876 15 C -0.130 4.130 16 C -0.111 4.111 17 C -0.586 4.586 18 S 2.362 3.638 19 O -0.924 6.924 20 O -0.956 6.956 21 C -0.611 4.611 22 H 0.050 0.950 23 H 0.023 0.977 24 H 0.034 0.966 25 H 0.032 0.968 26 H 0.092 0.908 27 H 0.262 0.738 28 H 0.340 0.660 29 H 0.066 0.934 30 H 0.049 0.951 31 H 0.066 0.934 32 H 0.092 0.908 33 H 0.087 0.913 34 H 0.128 0.872 35 H 0.129 0.871 36 H 0.126 0.874 37 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.084 7.345 -5.781 11.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.146 4.146 3 C 0.101 3.899 4 H 0.057 0.943 5 C -0.593 4.593 6 H 0.086 0.914 7 C -0.133 4.133 8 N -0.517 5.517 9 Si 0.710 3.290 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.194 1.194 13 N -0.310 5.310 14 C 0.030 3.970 15 C -0.188 4.188 16 C -0.150 4.150 17 C -0.715 4.715 18 S 2.547 3.453 19 O -0.921 6.921 20 O -0.953 6.953 21 C -0.745 4.745 22 H 0.069 0.931 23 H 0.042 0.958 24 H 0.053 0.947 25 H 0.051 0.949 26 H 0.110 0.890 27 H 0.072 0.928 28 H 0.159 0.841 29 H 0.085 0.915 30 H 0.068 0.932 31 H 0.085 0.915 32 H 0.110 0.890 33 H 0.106 0.894 34 H 0.146 0.854 35 H 0.147 0.853 36 H 0.145 0.855 37 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -6.694 7.212 -5.742 11.393 hybrid contribution 1.072 0.228 0.445 1.183 sum -5.622 7.439 -5.297 10.725 Atomic orbital electron populations 1.21772 0.99288 0.98541 1.00106 1.21534 0.91840 0.99249 1.01975 1.19301 0.93059 0.91388 0.86121 0.94341 1.21997 0.92375 1.37135 1.07751 0.91404 1.24931 0.98102 0.94623 0.95624 1.69866 1.35066 1.36129 1.10665 0.86726 0.85996 0.77652 0.78650 1.20550 1.21061 1.19396 1.61203 1.42113 1.12283 1.15351 1.20933 0.94260 0.90273 0.91524 1.21996 0.95568 1.00670 1.00585 1.21819 1.01482 0.93336 0.98343 1.30403 1.20133 1.06002 1.14952 1.09829 0.78811 0.76448 0.80186 1.93641 1.60468 1.64870 1.73103 1.93553 1.79386 1.43660 1.78712 1.31470 1.13494 1.14446 1.15058 0.93059 0.95753 0.94723 0.94906 0.88964 0.92763 0.84138 0.91489 0.93224 0.91538 0.88951 0.89388 0.85375 0.85296 0.85523 0.80334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.67 9.83 37.16 0.37 -2.31 16 2 C -0.11 -2.43 5.43 -26.73 -0.15 -2.58 16 3 C 0.21 4.68 1.17 -68.86 -0.08 4.60 16 4 H 0.04 0.92 5.37 -51.93 -0.28 0.64 16 5 C -0.55 -14.06 6.58 -34.44 -0.23 -14.29 16 6 H 0.07 1.76 7.49 -52.49 -0.39 1.37 16 7 C 0.07 1.86 5.29 -17.82 -0.09 1.77 16 8 N -0.88 -23.66 11.18 55.43 0.62 -23.04 16 9 Si 0.88 20.95 29.54 -169.99 -5.02 15.92 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 13 N -0.68 -12.69 5.11 -93.92 -0.48 -13.17 16 14 C 0.12 1.91 0.82 -131.29 -0.11 1.81 16 15 C -0.13 -1.85 7.72 37.16 0.29 -1.57 16 16 C -0.11 -1.35 5.73 -26.42 -0.15 -1.50 16 17 C -0.59 -6.49 7.40 37.79 0.28 -6.21 16 18 S 2.36 37.30 6.07 -107.50 -0.65 36.65 16 19 O -0.92 -18.00 18.12 -57.67 -1.04 -19.04 16 20 O -0.96 -17.59 18.17 -57.67 -1.05 -18.63 16 21 C -0.61 -9.95 5.95 37.79 0.22 -9.73 16 22 H 0.05 0.92 6.88 -51.93 -0.36 0.56 16 23 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.03 0.75 8.14 -51.92 -0.42 0.33 16 26 H 0.09 2.35 5.85 -51.93 -0.30 2.05 16 27 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 28 H 0.34 6.63 7.76 -39.29 -0.30 6.32 16 29 H 0.07 1.09 6.54 -51.93 -0.34 0.75 16 30 H 0.05 0.57 8.12 -51.93 -0.42 0.14 16 31 H 0.07 0.93 7.44 -51.93 -0.39 0.54 16 32 H 0.09 1.13 7.67 -51.93 -0.40 0.73 16 33 H 0.09 0.89 7.51 -51.93 -0.39 0.50 16 34 H 0.13 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.13 1.14 8.14 -51.93 -0.42 0.71 16 36 H 0.13 1.72 7.86 -51.93 -0.41 1.31 16 37 H 0.18 3.58 4.61 -51.93 -0.24 3.34 16 LS Contribution 297.52 15.07 4.48 4.48 Total: -1.00 -30.38 297.52 -8.26 -38.64 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: -5.47 Total: 8.19 kcal Atomic # 6 Polarization: -30.35 SS G_CDS: 0.35 Total: -30.00 kcal Atomic # 7 Polarization: -36.35 SS G_CDS: 0.14 Total: -36.21 kcal Atomic # 8 Polarization: -35.58 SS G_CDS: -2.09 Total: -37.68 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.92 kcal Atomic # 16 Polarization: 37.30 SS G_CDS: -0.65 Total: 36.65 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -30.38 -8.26 -38.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255156708.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.813 kcal (2) G-P(sol) polarization free energy of solvation -30.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds