Wall clock time and date at job start Mon Mar 30 2020 00:41:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47174 * 2 1 4 4 H 1.08998 * 109.46981 * 56.19759 * 3 2 1 5 5 C 1.50706 * 109.46962 * 176.19771 * 3 2 1 6 6 H 1.07991 * 119.99927 * 121.39121 * 5 3 2 7 7 C 1.37878 * 119.99651 * 301.66545 * 5 3 2 8 8 N 1.31516 * 120.00164 * 359.72979 * 7 5 3 9 9 Si 1.86801 * 119.99762 * 179.72471 * 7 5 3 10 10 H 1.48506 * 109.46918 * 90.00218 * 9 7 5 11 11 H 1.48491 * 109.47161 * 209.99889 * 9 7 5 12 12 H 1.48501 * 109.47171 * 330.00265 * 9 7 5 13 13 N 1.46907 * 109.46823 * 296.19502 * 3 2 1 14 14 C 1.46903 * 110.99336 * 137.27078 * 13 3 2 15 15 C 1.52995 * 108.89062 * 294.40993 * 14 13 3 16 16 C 1.52379 * 108.92256 * 175.74363 * 14 13 3 17 17 C 1.54207 * 112.29457 * 239.25411 * 16 14 13 18 18 S 1.83815 * 102.86388 * 25.04661 * 17 16 14 19 19 O 1.42101 * 109.81688 * 77.68352 * 18 17 16 20 20 O 1.42105 * 109.81149 * 211.99988 * 18 17 16 21 21 C 1.54208 * 108.92785 * 53.08322 * 14 13 3 22 22 H 1.08995 * 109.47223 * 55.47363 * 1 2 3 23 23 H 1.08994 * 109.47240 * 175.47905 * 1 2 3 24 24 H 1.09002 * 109.46458 * 295.47432 * 1 2 3 25 25 H 1.09008 * 109.46745 * 239.99914 * 2 1 3 26 26 H 1.08994 * 109.47198 * 120.00468 * 2 1 3 27 27 H 0.96997 * 119.99618 * 180.02562 * 8 7 5 28 28 H 1.00900 * 110.99715 * 261.21815 * 13 3 2 29 29 H 1.08999 * 109.47546 * 67.13670 * 15 14 13 30 30 H 1.09004 * 109.47363 * 187.13295 * 15 14 13 31 31 H 1.09002 * 109.47671 * 307.12817 * 15 14 13 32 32 H 1.08999 * 108.92880 * 359.97438 * 16 14 13 33 33 H 1.09001 * 108.92830 * 118.64297 * 16 14 13 34 34 H 1.09004 * 110.73603 * 143.38987 * 17 16 14 35 35 H 1.08999 * 110.73473 * 266.69691 * 17 16 14 36 36 H 1.09003 * 110.72858 * 214.04276 * 21 14 13 37 37 H 1.08998 * 110.73463 * 337.34708 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6221 1.9756 0.8539 5 6 3.5442 1.4435 0.0942 6 1 4.1333 1.9132 -0.6794 7 6 4.1681 0.8397 1.1653 8 7 3.4506 0.2676 2.1073 9 14 6.0327 0.8342 1.2782 10 1 6.4877 2.0421 2.0127 11 1 6.4812 -0.3828 2.0011 12 1 6.6115 0.8392 -0.0894 13 7 1.6268 2.1079 -1.2428 14 6 1.1479 3.4708 -0.9760 15 6 -0.1325 3.3915 -0.1423 16 6 0.8329 4.1524 -2.3019 17 6 1.6641 5.4340 -2.5129 18 16 3.1490 5.1348 -1.4716 19 8 4.0340 4.2455 -2.1389 20 8 3.6298 6.3673 -0.9529 21 6 2.2223 4.2301 -0.1716 22 1 -0.3633 0.5824 -0.8466 23 1 -0.3633 -1.0244 -0.0810 24 1 -0.3632 0.4420 0.9278 25 1 1.8933 -0.5139 -0.8901 26 1 1.8934 -0.5139 0.8899 27 1 3.8896 -0.1568 2.8610 28 1 2.3778 2.1140 -1.9166 29 1 0.1019 2.9998 0.8475 30 1 -0.5655 4.3872 -0.0456 31 1 -0.8465 2.7313 -0.6347 32 1 1.0425 3.4576 -3.1152 33 1 -0.2255 4.4122 -2.3233 34 1 1.9434 5.5447 -3.5607 35 1 1.1178 6.3101 -2.1635 36 1 1.7602 4.9270 0.5276 37 1 2.8765 3.5332 0.3522 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255156708.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:41:49 Heat of formation + Delta-G solvation = -93.761324 kcal Electronic energy + Delta-G solvation = -19483.903929 eV Core-core repulsion = 16580.512840 eV Total energy + Delta-G solvation = -2903.391089 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 261.119 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.95446 -37.96906 -36.98364 -36.24690 -33.73898 -32.17054 -30.44525 -28.81805 -27.81390 -25.32062 -24.24383 -21.41553 -20.25036 -19.72686 -18.67208 -17.56902 -17.19491 -16.84947 -16.71013 -16.23636 -15.44361 -14.89178 -14.74758 -14.69064 -14.15602 -13.78193 -13.42834 -13.33521 -13.15332 -13.12245 -13.04152 -12.92978 -12.68748 -12.60966 -12.40498 -12.31574 -11.95947 -11.71069 -11.49986 -11.44000 -11.24188 -10.92709 -10.80381 -10.40048 -9.09327 -8.08915 -6.24948 -0.77890 1.31860 1.36445 1.46028 1.66582 2.37757 2.73925 3.02504 3.13307 3.52442 3.72180 3.85037 4.00984 4.14938 4.28188 4.52585 4.70639 4.81415 4.86545 4.95564 4.98926 5.03480 5.08910 5.09918 5.27744 5.43150 5.45428 5.57009 5.62782 5.73988 5.84648 6.12340 6.29406 6.43877 6.85259 7.05715 7.44789 8.88225 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.018176 B = 0.010315 C = 0.007295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.088997 B = 2713.934604 C = 3837.445605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.107 4.107 3 C 0.219 3.781 4 H 0.024 0.976 5 C -0.555 4.555 6 H 0.053 0.947 7 C 0.029 3.971 8 N -0.901 5.901 9 Si 0.924 3.076 10 H -0.279 1.279 11 H -0.279 1.279 12 H -0.276 1.276 13 N -0.673 5.673 14 C 0.118 3.882 15 C -0.128 4.128 16 C -0.111 4.111 17 C -0.539 4.539 18 S 2.347 3.653 19 O -0.974 6.974 20 O -0.991 6.991 21 C -0.618 4.618 22 H 0.066 0.934 23 H 0.037 0.963 24 H 0.033 0.967 25 H 0.020 0.980 26 H 0.060 0.940 27 H 0.261 0.739 28 H 0.333 0.667 29 H 0.037 0.963 30 H 0.086 0.914 31 H 0.073 0.927 32 H 0.095 0.905 33 H 0.127 0.873 34 H 0.158 0.842 35 H 0.168 0.832 36 H 0.150 0.850 37 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.473 8.907 -7.390 14.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.146 4.146 3 C 0.111 3.889 4 H 0.042 0.958 5 C -0.594 4.594 6 H 0.072 0.928 7 C -0.172 4.172 8 N -0.540 5.540 9 Si 0.750 3.250 10 H -0.205 1.205 11 H -0.204 1.204 12 H -0.201 1.201 13 N -0.303 5.303 14 C 0.024 3.976 15 C -0.187 4.187 16 C -0.150 4.150 17 C -0.672 4.672 18 S 2.538 3.462 19 O -0.971 6.971 20 O -0.988 6.988 21 C -0.751 4.751 22 H 0.085 0.915 23 H 0.056 0.944 24 H 0.052 0.948 25 H 0.039 0.961 26 H 0.079 0.921 27 H 0.071 0.929 28 H 0.151 0.849 29 H 0.056 0.944 30 H 0.105 0.895 31 H 0.092 0.908 32 H 0.113 0.887 33 H 0.145 0.855 34 H 0.176 0.824 35 H 0.186 0.814 36 H 0.168 0.832 37 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -9.040 8.770 -7.320 14.568 hybrid contribution 1.750 -0.200 0.899 1.978 sum -7.290 8.570 -6.421 12.954 Atomic orbital electron populations 1.21613 0.96231 0.99733 1.00697 1.21423 0.94567 0.98882 0.99743 1.19015 0.91012 0.91533 0.87347 0.95794 1.22257 0.94306 1.35902 1.06893 0.92843 1.25463 1.00764 0.95068 0.95901 1.69960 1.35826 1.37132 1.11058 0.86082 0.83038 0.77726 0.78106 1.20471 1.20397 1.20088 1.61153 1.41163 1.14752 1.13233 1.21228 0.94151 0.88569 0.93680 1.22012 0.94990 1.02952 0.98708 1.21864 1.03760 0.93429 0.95944 1.30192 1.15092 1.07115 1.14850 1.09966 0.80433 0.75230 0.80543 1.93575 1.63740 1.66023 1.73726 1.93500 1.81232 1.44183 1.79864 1.31368 1.13387 1.14403 1.15963 0.91488 0.94427 0.94793 0.96128 0.92149 0.92922 0.84894 0.94352 0.89477 0.90845 0.88679 0.85489 0.82369 0.81393 0.83202 0.84547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.65 9.83 71.98 0.71 -3.94 16 2 C -0.11 -4.94 5.43 30.60 0.17 -4.78 16 3 C 0.22 10.02 1.17 44.17 0.05 10.08 16 4 H 0.02 1.18 5.37 -2.39 -0.01 1.17 16 5 C -0.55 -29.21 6.58 25.60 0.17 -29.04 16 6 H 0.05 2.92 7.49 -2.92 -0.02 2.89 16 7 C 0.03 1.57 5.29 84.65 0.45 2.02 16 8 N -0.90 -50.10 11.18 21.45 0.24 -49.86 16 9 Si 0.92 44.28 29.54 68.60 2.03 46.31 16 10 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 11 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 12 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 13 N -0.67 -24.69 5.11 -451.07 -2.30 -26.99 16 14 C 0.12 3.34 0.82 3.73 0.00 3.34 16 15 C -0.13 -3.25 7.72 71.98 0.56 -2.70 16 16 C -0.11 -2.14 5.73 30.80 0.18 -1.96 16 17 C -0.54 -9.08 7.40 72.39 0.54 -8.54 16 18 S 2.35 71.83 6.07 -56.49 -0.34 71.48 16 19 O -0.97 -38.58 18.12 -127.53 -2.31 -40.89 16 20 O -0.99 -35.97 18.17 -127.53 -2.32 -38.29 16 21 C -0.62 -19.76 5.95 72.39 0.43 -19.33 16 22 H 0.07 2.25 6.88 -2.39 -0.02 2.24 16 23 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 24 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 25 H 0.02 0.95 8.14 -2.38 -0.02 0.93 16 26 H 0.06 3.18 5.85 -2.39 -0.01 3.16 16 27 H 0.26 13.99 8.31 -92.71 -0.77 13.22 16 28 H 0.33 13.01 7.76 -89.69 -0.70 12.31 16 29 H 0.04 1.19 6.54 -2.39 -0.02 1.18 16 30 H 0.09 1.55 8.12 -2.39 -0.02 1.53 16 31 H 0.07 1.76 7.44 -2.39 -0.02 1.74 16 32 H 0.09 1.89 7.67 -2.39 -0.02 1.87 16 33 H 0.13 1.63 7.51 -2.39 -0.02 1.62 16 34 H 0.16 1.97 8.14 -2.38 -0.02 1.95 16 35 H 0.17 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.15 3.89 7.86 -2.39 -0.02 3.87 16 37 H 0.14 5.70 4.61 -2.39 -0.01 5.69 16 Total: -1.00 -69.61 297.52 -1.39 -71.00 By element: Atomic # 1 Polarization: 21.72 SS G_CDS: 0.37 Total: 22.10 kcal Atomic # 6 Polarization: -58.09 SS G_CDS: 3.24 Total: -54.85 kcal Atomic # 7 Polarization: -74.79 SS G_CDS: -2.06 Total: -76.86 kcal Atomic # 8 Polarization: -74.55 SS G_CDS: -4.63 Total: -79.18 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Atomic # 16 Polarization: 71.83 SS G_CDS: -0.34 Total: 71.48 kcal Total: -69.61 -1.39 -71.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255156708.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.766 kcal (2) G-P(sol) polarization free energy of solvation -69.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds