Wall clock time and date at job start Mon Mar 30 2020 00:35:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50696 * 119.99773 * 2 1 4 4 C 1.53004 * 109.47302 * 125.00256 * 3 2 1 5 5 O 1.42899 * 109.47260 * 179.97438 * 4 3 2 6 6 N 1.41601 * 113.99751 * 179.97438 * 5 4 3 7 7 C 1.34780 * 119.99764 * 180.02562 * 6 5 4 8 8 O 1.21544 * 119.99932 * 0.02562 * 7 6 5 9 9 C 1.47887 * 119.99821 * 180.02562 * 7 6 5 10 10 C 1.39922 * 120.02762 * 359.97438 * 9 7 6 11 11 C 1.38324 * 120.35956 * 180.02562 * 10 9 7 12 12 C 1.37743 * 120.41166 * 359.97438 * 11 10 9 13 13 C 1.40753 * 120.04404 * 0.02562 * 12 11 10 14 14 C 1.41428 * 120.18094 * 180.02562 * 13 12 11 15 15 H 1.08000 * 120.00377 * 24.37846 * 14 13 12 16 16 C 1.39938 * 120.00012 * 204.38668 * 14 13 12 17 17 N 1.30825 * 119.99869 * 17.84278 * 16 14 13 18 18 Si 1.86804 * 120.00158 * 197.84304 * 16 14 13 19 19 H 1.48505 * 109.46701 * 94.69079 * 18 16 14 20 20 H 1.48499 * 109.47242 * 214.69090 * 18 16 14 21 21 H 1.48500 * 109.47130 * 334.69434 * 18 16 14 22 22 C 1.38993 * 120.02489 * 179.97438 * 9 7 6 23 23 H 1.08002 * 119.99599 * 179.97438 * 1 2 3 24 24 H 1.07991 * 120.00140 * 359.97438 * 1 2 3 25 25 H 1.08004 * 120.00410 * 180.02562 * 2 1 3 26 26 H 1.08992 * 109.47416 * 5.00086 * 3 2 1 27 27 H 1.09010 * 109.47276 * 244.99924 * 3 2 1 28 28 H 1.09000 * 109.46789 * 59.99800 * 4 3 2 29 29 H 1.08998 * 109.47029 * 299.99972 * 4 3 2 30 30 H 0.97004 * 120.00096 * 0.02562 * 6 5 4 31 31 H 1.08009 * 119.81952 * 0.02562 * 10 9 7 32 32 H 1.08004 * 119.79125 * 180.02562 * 11 10 9 33 33 H 1.08004 * 119.98157 * 179.97438 * 12 11 10 34 34 H 0.97002 * 120.00058 * 179.97438 * 17 16 14 35 35 H 1.07998 * 120.19965 * 359.70686 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0350 1.3331 1.1816 5 8 3.7499 2.5705 1.1813 6 7 4.6801 2.6984 2.2412 7 6 5.4202 3.8189 2.3566 8 8 5.2889 4.7196 1.5512 9 6 6.3921 3.9524 3.4633 10 6 6.5434 2.9160 4.3911 11 6 7.4500 3.0337 5.4291 12 6 8.2146 4.1718 5.5614 13 6 8.0764 5.2249 4.6378 14 6 8.8604 6.3945 4.7705 15 1 9.8048 6.3552 5.2928 16 6 8.4123 7.6028 4.2251 17 7 7.1514 7.7499 3.9087 18 14 9.6144 9.0057 3.9489 19 1 10.1139 8.9615 2.5511 20 1 8.9278 10.3004 4.1885 21 1 10.7573 8.8703 4.8874 22 6 7.1560 5.1074 3.5825 23 1 -0.5399 -0.9354 -0.0004 24 1 -0.5400 0.9352 0.0004 25 1 1.8501 -0.9353 -0.0004 26 1 1.3586 2.1316 0.0896 27 1 2.6213 1.4026 -0.9315 28 1 3.7400 0.5066 1.0920 29 1 2.4773 1.2356 2.1130 30 1 4.7846 1.9797 2.8842 31 1 5.9490 2.0192 4.2962 32 1 7.5596 2.2279 6.1399 33 1 8.9201 4.2566 6.3748 34 1 6.8407 8.5876 3.5310 35 1 7.0460 5.9079 2.8659 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001557717870.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:35:47 Heat of formation + Delta-G solvation = 0.288746 kcal Electronic energy + Delta-G solvation = -18254.431531 eV Core-core repulsion = 15219.674808 eV Total energy + Delta-G solvation = -3034.756723 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 261.115 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.10310 -37.61168 -36.73725 -35.14480 -33.81337 -32.05059 -30.07607 -29.50265 -28.71112 -25.34023 -23.34804 -22.70291 -21.01057 -20.20374 -19.58208 -18.07635 -17.51812 -16.17270 -15.91828 -15.30238 -15.07018 -14.82546 -14.30866 -14.03075 -13.78672 -13.34746 -13.17971 -12.82390 -12.55834 -12.26486 -11.89779 -11.66821 -11.40095 -11.22189 -11.13505 -10.80659 -10.70577 -10.52981 -10.05990 -9.75297 -9.71039 -9.25766 -9.12085 -8.51108 -7.70606 -7.58555 -6.83918 -4.45766 1.85674 2.14595 2.34190 2.77201 3.06855 3.10673 3.13192 3.83424 3.90021 4.45909 4.59371 4.68605 4.90813 4.96906 5.07148 5.20942 5.51435 5.54753 5.55002 5.66079 5.80636 6.00694 6.19289 6.29549 6.42535 6.65268 6.90656 6.94419 7.15213 7.18521 7.30898 7.60442 7.66534 7.85264 7.97454 8.12584 8.44864 8.75710 8.77645 8.93986 10.10761 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.032790 B = 0.003809 C = 0.003467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.707255 B = 7349.502548 C = 8073.604714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.152 4.152 3 C -0.088 4.088 4 C 0.037 3.963 5 O -0.152 6.152 6 N -0.602 5.602 7 C 0.576 3.424 8 O -0.527 6.527 9 C -0.115 4.115 10 C -0.224 4.224 11 C -0.094 4.094 12 C -0.211 4.211 13 C 0.100 3.900 14 C -0.457 4.457 15 H 0.083 0.917 16 C 0.072 3.928 17 N -0.780 5.780 18 Si 0.912 3.088 19 H -0.266 1.266 20 H -0.276 1.276 21 H -0.261 1.261 22 C -0.089 4.089 23 H 0.100 0.900 24 H 0.099 0.901 25 H 0.112 0.888 26 H 0.079 0.921 27 H 0.085 0.915 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.405 0.595 31 H 0.089 0.911 32 H 0.095 0.905 33 H 0.097 0.903 34 H 0.286 0.714 35 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.210 -11.375 -3.244 13.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.170 4.170 3 C -0.126 4.126 4 C -0.041 4.041 5 O -0.156 6.156 6 N -0.307 5.307 7 C 0.367 3.633 8 O -0.402 6.402 9 C -0.119 4.119 10 C -0.244 4.244 11 C -0.112 4.112 12 C -0.231 4.231 13 C 0.097 3.903 14 C -0.486 4.486 15 H 0.101 0.899 16 C -0.147 4.147 17 N -0.404 5.404 18 Si 0.736 3.264 19 H -0.191 1.191 20 H -0.201 1.201 21 H -0.185 1.185 22 C -0.109 4.109 23 H 0.118 0.882 24 H 0.117 0.883 25 H 0.130 0.870 26 H 0.098 0.902 27 H 0.103 0.897 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.247 0.753 31 H 0.107 0.893 32 H 0.113 0.887 33 H 0.116 0.884 34 H 0.097 0.903 35 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -7.520 -10.366 -4.071 13.438 hybrid contribution 0.209 -0.117 0.245 0.343 sum -7.311 -10.483 -3.826 13.341 Atomic orbital electron populations 1.23921 0.95853 1.02143 1.00412 1.22764 0.95989 0.97796 1.00488 1.20587 0.97702 0.96334 0.98024 1.22854 0.94436 0.87385 0.99405 1.90531 1.50663 1.36574 1.37804 1.47739 1.37269 1.21272 1.24410 1.18974 0.79282 0.79625 0.85434 1.90721 1.67128 1.39197 1.43138 1.19200 0.99419 0.97792 0.95475 1.20317 1.05597 0.98152 1.00308 1.20422 0.96730 0.97044 0.97014 1.21107 1.04709 0.96469 1.00845 1.17587 0.90928 0.92420 0.89328 1.19624 1.05450 0.92253 1.31240 0.89872 1.25997 0.95341 1.00487 0.92925 1.69784 1.14562 1.26825 1.29247 0.86232 0.80898 0.79378 0.79879 1.19137 1.20148 1.18490 1.21625 0.96001 0.95072 0.98230 0.88213 0.88311 0.87025 0.90201 0.89659 0.92223 0.92216 0.75346 0.89333 0.88709 0.88433 0.90277 0.84638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.40 14.32 29.01 0.42 -0.98 16 2 C -0.15 -1.24 9.52 -36.03 -0.34 -1.59 16 3 C -0.09 -0.89 6.03 -27.88 -0.17 -1.06 16 4 C 0.04 0.44 6.21 37.16 0.23 0.67 16 5 O -0.15 -2.66 11.11 -29.62 -0.33 -2.99 16 6 N -0.60 -11.05 6.34 30.54 0.19 -10.86 16 7 C 0.58 13.33 7.92 -12.31 -0.10 13.24 16 8 O -0.53 -14.24 16.74 -12.83 -0.21 -14.45 16 9 C -0.12 -2.73 5.87 -105.04 -0.62 -3.34 16 10 C -0.22 -4.60 9.55 -38.92 -0.37 -4.97 16 11 C -0.09 -1.94 10.01 -39.73 -0.40 -2.34 16 12 C -0.21 -4.90 9.78 -38.81 -0.38 -5.28 16 13 C 0.10 2.61 5.57 -106.87 -0.60 2.01 16 14 C -0.46 -11.82 9.05 -37.73 -0.34 -12.16 16 15 H 0.08 2.03 7.91 -52.49 -0.41 1.62 16 16 C 0.07 1.81 5.14 -17.34 -0.09 1.72 16 17 N -0.78 -20.55 10.96 55.55 0.61 -19.95 16 18 Si 0.91 18.61 29.60 -169.99 -5.03 13.58 16 19 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 20 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 21 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 22 C -0.09 -2.37 8.23 -38.44 -0.32 -2.68 16 23 H 0.10 0.60 8.06 -52.49 -0.42 0.18 16 24 H 0.10 0.72 7.84 -52.49 -0.41 0.31 16 25 H 0.11 0.78 8.06 -52.48 -0.42 0.35 16 26 H 0.08 0.83 7.79 -51.93 -0.40 0.43 16 27 H 0.09 0.87 8.14 -51.92 -0.42 0.44 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.41 6.00 6.56 -40.82 -0.27 5.73 16 31 H 0.09 1.47 6.38 -52.48 -0.33 1.14 16 32 H 0.09 1.64 8.06 -52.48 -0.42 1.22 16 33 H 0.10 2.09 8.06 -52.48 -0.42 1.67 16 34 H 0.29 6.92 8.30 -40.82 -0.34 6.59 16 35 H 0.14 3.90 5.75 -52.49 -0.30 3.60 16 LS Contribution 310.43 15.07 4.68 4.68 Total: -1.00 -30.62 310.43 -7.39 -38.02 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: -4.23 Total: 8.75 kcal Atomic # 6 Polarization: -13.70 SS G_CDS: -3.07 Total: -16.77 kcal Atomic # 7 Polarization: -31.61 SS G_CDS: 0.80 Total: -30.81 kcal Atomic # 8 Polarization: -16.90 SS G_CDS: -0.54 Total: -17.44 kcal Atomic # 14 Polarization: 18.61 SS G_CDS: -5.03 Total: 13.58 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -30.62 -7.39 -38.02 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001557717870.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.306 kcal (2) G-P(sol) polarization free energy of solvation -30.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.018 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds