Wall clock time and date at job start Sun Mar 29 2020 23:56:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38131 * 119.83626 * 2 1 4 4 C 1.38013 * 120.10815 * 179.97438 * 3 2 1 5 5 C 1.39588 * 120.01962 * 0.10599 * 4 3 2 6 6 C 1.47741 * 120.00143 * 180.02562 * 5 4 3 7 7 O 1.21470 * 119.99993 * 186.28688 * 6 5 4 8 8 O 1.34716 * 120.00042 * 6.28458 * 6 5 4 9 9 C 1.39796 * 119.99768 * 0.06530 * 5 4 3 10 10 C 1.38541 * 119.46320 * 359.71920 * 9 5 4 11 11 N 1.39591 * 120.83238 * 180.35110 * 10 9 5 12 12 C 1.36848 * 120.51509 * 166.27936 * 11 10 9 13 13 H 1.07998 * 120.00479 * 317.02221 * 12 11 10 14 14 C 1.38796 * 119.99594 * 137.02652 * 12 11 10 15 15 N 1.31593 * 120.00280 * 352.33634 * 14 12 11 16 16 Si 1.86801 * 120.00094 * 172.34017 * 14 12 11 17 17 H 1.48501 * 109.47357 * 89.99617 * 16 14 12 18 18 H 1.48500 * 109.47490 * 209.99803 * 16 14 12 19 19 H 1.48500 * 109.47062 * 330.00089 * 16 14 12 20 20 C 1.46898 * 118.96657 * 346.30245 * 11 10 9 21 21 C 1.53432 * 107.85685 * 44.75973 * 20 11 10 22 22 C 1.50568 * 118.97030 * 179.51098 * 9 5 4 23 23 H 1.09003 * 109.46811 * 262.22106 * 1 2 3 24 24 H 1.09002 * 109.46715 * 22.21994 * 1 2 3 25 25 H 1.09002 * 109.47058 * 142.22201 * 1 2 3 26 26 H 1.07995 * 119.94600 * 359.97438 * 3 2 1 27 27 H 1.07998 * 119.99313 * 180.13075 * 4 3 2 28 28 H 0.96697 * 117.00166 * 180.02562 * 8 6 5 29 29 H 0.96996 * 120.00127 * 180.02562 * 15 14 12 30 30 H 1.09002 * 109.79872 * 164.36220 * 20 11 10 31 31 H 1.08993 * 109.79242 * 285.15676 * 20 11 10 32 32 H 1.09006 * 109.58295 * 56.72184 * 21 20 11 33 33 H 1.09003 * 109.58168 * 177.11928 * 21 20 11 34 34 H 1.09000 * 109.30476 * 279.92750 * 22 9 5 35 35 H 1.08996 * 109.30657 * 39.32004 * 22 9 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1942 1.1982 0.0000 4 6 3.5743 1.2048 0.0005 5 6 4.2784 -0.0005 -0.0012 6 6 5.7558 0.0069 0.0000 7 8 6.3685 -1.0354 -0.1167 8 8 6.4234 1.1698 0.1304 9 6 3.5856 -1.2147 -0.0048 10 6 2.2002 -1.2087 -0.0007 11 7 1.4796 -2.4043 0.0032 12 6 0.1408 -2.4077 0.2867 13 1 -0.2407 -1.8070 1.0991 14 6 -0.7267 -3.1834 -0.4698 15 7 -0.2902 -3.7959 -1.5496 16 14 -2.5139 -3.3579 0.0449 17 1 -3.3187 -2.2827 -0.5887 18 1 -3.0273 -4.6818 -0.3896 19 1 -2.6166 -3.2477 1.5222 20 6 2.1809 -3.6586 -0.3014 21 6 3.5028 -3.6596 0.4775 22 6 4.3682 -2.5009 -0.0178 23 1 -0.3633 -0.1391 1.0183 24 1 -0.3633 0.9514 -0.3886 25 1 -0.3633 -0.8123 -0.6296 26 1 1.6507 2.1314 -0.0004 27 1 4.1098 2.1427 0.0027 28 1 7.3893 1.1244 0.1251 29 1 -0.8966 -4.3377 -2.0784 30 1 1.5703 -4.5072 0.0071 31 1 2.3826 -3.7184 -1.3708 32 1 3.3003 -3.5341 1.5412 33 1 4.0238 -4.6026 0.3117 34 1 4.7009 -2.7101 -1.0345 35 1 5.2393 -2.3993 0.6294 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600350310.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:56:49 Heat of formation + Delta-G solvation = -49.043279 kcal Electronic energy + Delta-G solvation = -20081.010711 eV Core-core repulsion = 17044.114791 eV Total energy + Delta-G solvation = -3036.895920 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 261.115 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.17275 -38.92430 -35.85248 -35.83744 -34.14985 -31.96467 -30.05029 -29.40604 -27.46326 -25.33604 -23.08127 -22.64138 -22.15642 -20.15196 -18.84258 -17.78274 -17.32836 -16.36961 -15.33081 -15.11429 -14.85909 -14.44049 -14.13001 -13.62160 -13.33809 -13.14243 -12.59593 -12.53565 -12.39106 -11.87375 -11.69259 -11.36068 -11.31198 -11.12472 -10.97642 -10.90660 -10.66199 -10.54012 -10.30069 -10.07265 -9.74442 -9.28375 -8.90116 -8.61638 -7.86321 -6.57863 -6.20005 -3.89256 1.49167 2.42186 3.08748 3.16784 3.18722 3.23637 3.47330 4.03334 4.59540 4.90629 4.93391 5.52868 5.54604 5.76163 5.82457 5.91625 6.08955 6.13848 6.31579 6.45233 6.52432 6.58838 6.65083 6.68687 6.70908 6.75239 6.86998 7.01433 7.16639 7.20421 7.28905 7.32174 7.38148 7.59657 7.73195 8.11374 8.32485 8.63847 9.17748 9.65417 10.63795 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.029730 B = 0.007088 C = 0.005931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.581622 B = 3949.172546 C = 4720.162927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.122 4.122 3 C -0.099 4.099 4 C -0.166 4.166 5 C -0.093 4.093 6 C 0.525 3.475 7 O -0.520 6.520 8 O -0.517 6.517 9 C -0.127 4.127 10 C 0.214 3.786 11 N -0.449 5.449 12 C -0.306 4.306 13 H 0.094 0.906 14 C 0.031 3.969 15 N -0.870 5.870 16 Si 0.914 3.086 17 H -0.274 1.274 18 H -0.282 1.282 19 H -0.269 1.269 20 C 0.146 3.854 21 C -0.146 4.146 22 C -0.065 4.065 23 H 0.055 0.945 24 H 0.029 0.971 25 H 0.111 0.889 26 H 0.112 0.888 27 H 0.115 0.885 28 H 0.403 0.597 29 H 0.269 0.731 30 H 0.075 0.925 31 H 0.053 0.947 32 H 0.058 0.942 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.389 5.088 2.606 7.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.128 4.128 3 C -0.118 4.118 4 C -0.188 4.188 5 C -0.095 4.095 6 C 0.372 3.628 7 O -0.410 6.410 8 O -0.328 6.328 9 C -0.134 4.134 10 C 0.100 3.900 11 N -0.139 5.139 12 C -0.435 4.435 13 H 0.112 0.888 14 C -0.174 4.174 15 N -0.505 5.505 16 Si 0.740 3.260 17 H -0.200 1.200 18 H -0.208 1.208 19 H -0.193 1.193 20 C 0.022 3.978 21 C -0.185 4.185 22 C -0.102 4.102 23 H 0.074 0.926 24 H 0.048 0.952 25 H 0.130 0.870 26 H 0.130 0.870 27 H 0.133 0.867 28 H 0.260 0.740 29 H 0.079 0.921 30 H 0.093 0.907 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 4.844 4.374 2.413 6.958 hybrid contribution -0.193 -0.108 0.079 0.234 sum 4.651 4.266 2.492 6.786 Atomic orbital electron populations 1.21384 0.91323 1.01549 1.02205 1.19636 0.96415 0.91180 1.05564 1.20550 0.93461 0.96572 1.01212 1.20614 0.93979 0.95885 1.08297 1.18420 0.86937 0.94424 1.09736 1.21353 0.89468 0.80199 0.71780 1.90797 1.70393 1.32886 1.46970 1.84631 1.25915 1.36530 1.85700 1.19068 0.91783 0.93533 1.09000 1.17678 0.89272 0.87751 0.95332 1.42486 1.06591 1.00967 1.63810 1.19529 0.81527 1.28958 1.13440 0.88848 1.25560 0.99716 0.97737 0.94429 1.69970 1.36335 1.30322 1.13892 0.86114 0.82692 0.78010 0.79171 1.19977 1.20788 1.19339 1.21374 0.90514 0.87960 0.97911 1.22086 0.97777 0.98098 1.00490 1.20439 0.97136 0.90971 1.01626 0.92646 0.95231 0.87040 0.87036 0.86686 0.74032 0.92085 0.90690 0.92855 0.92273 0.91843 0.91792 0.89818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.21 8.10 36.01 0.29 -1.92 16 2 C -0.12 -2.61 5.88 -104.25 -0.61 -3.23 16 3 C -0.10 -1.85 9.64 -39.70 -0.38 -2.23 16 4 C -0.17 -3.03 9.60 -39.16 -0.38 -3.41 16 5 C -0.09 -1.83 5.88 -104.93 -0.62 -2.45 16 6 C 0.53 9.25 8.19 34.61 0.28 9.53 16 7 O -0.52 -9.95 14.02 -19.24 -0.27 -10.22 16 8 O -0.52 -7.02 12.68 -40.53 -0.51 -7.53 16 9 C -0.13 -2.74 5.80 -103.99 -0.60 -3.34 16 10 C 0.21 4.92 6.32 -83.80 -0.53 4.39 16 11 N -0.45 -10.83 2.89 -112.58 -0.32 -11.15 16 12 C -0.31 -7.47 5.73 -15.11 -0.09 -7.55 16 13 H 0.09 2.23 5.48 -52.49 -0.29 1.94 16 14 C 0.03 0.75 4.65 -17.45 -0.08 0.67 16 15 N -0.87 -22.48 11.99 55.49 0.67 -21.82 16 16 Si 0.91 19.05 29.56 -169.99 -5.02 14.02 16 17 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 18 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 19 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 20 C 0.15 3.31 4.96 -3.60 -0.02 3.29 16 21 C -0.15 -2.85 6.12 -26.58 -0.16 -3.01 16 22 C -0.06 -1.31 4.38 -28.02 -0.12 -1.43 16 23 H 0.05 1.09 6.70 -51.93 -0.35 0.74 16 24 H 0.03 0.52 8.02 -51.93 -0.42 0.10 16 25 H 0.11 2.58 5.06 -51.93 -0.26 2.32 16 26 H 0.11 1.78 8.04 -52.49 -0.42 1.36 16 27 H 0.12 1.84 7.61 -52.49 -0.40 1.44 16 28 H 0.40 3.36 9.11 45.56 0.42 3.78 16 29 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 30 H 0.07 1.76 7.43 -51.93 -0.39 1.37 16 31 H 0.05 1.29 8.13 -51.93 -0.42 0.86 16 32 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.06 1.31 8.12 -51.93 -0.42 0.88 16 35 H 0.08 1.66 5.91 -51.93 -0.31 1.36 16 LS Contribution 281.91 15.07 4.25 4.25 Total: -1.00 -27.72 281.91 -7.47 -35.20 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: -3.24 Total: 7.94 kcal Atomic # 6 Polarization: -7.68 SS G_CDS: -3.02 Total: -10.69 kcal Atomic # 7 Polarization: -33.31 SS G_CDS: 0.34 Total: -32.97 kcal Atomic # 8 Polarization: -16.96 SS G_CDS: -0.78 Total: -17.75 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -5.02 Total: 14.02 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -27.72 -7.47 -35.20 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600350310.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.845 kcal (2) G-P(sol) polarization free energy of solvation -27.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds