Wall clock time and date at job start Sun Mar 29 2020 23:56:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38131 * 119.83626 * 2 1 4 4 C 1.38013 * 120.10815 * 179.97438 * 3 2 1 5 5 C 1.39588 * 120.01962 * 0.10599 * 4 3 2 6 6 C 1.47741 * 120.00143 * 180.02562 * 5 4 3 7 7 O 1.21470 * 119.99993 * 186.28688 * 6 5 4 8 8 O 1.34716 * 120.00042 * 6.28458 * 6 5 4 9 9 C 1.39796 * 119.99768 * 0.06530 * 5 4 3 10 10 C 1.38541 * 119.46320 * 359.71920 * 9 5 4 11 11 N 1.39591 * 120.83238 * 180.35110 * 10 9 5 12 12 C 1.36848 * 120.51509 * 166.27936 * 11 10 9 13 13 H 1.07998 * 120.00479 * 317.02221 * 12 11 10 14 14 C 1.38796 * 119.99594 * 137.02652 * 12 11 10 15 15 N 1.31593 * 120.00280 * 352.33634 * 14 12 11 16 16 Si 1.86801 * 120.00094 * 172.34017 * 14 12 11 17 17 H 1.48501 * 109.47357 * 89.99617 * 16 14 12 18 18 H 1.48500 * 109.47490 * 209.99803 * 16 14 12 19 19 H 1.48500 * 109.47062 * 330.00089 * 16 14 12 20 20 C 1.46898 * 118.96657 * 346.30245 * 11 10 9 21 21 C 1.53432 * 107.85685 * 44.75973 * 20 11 10 22 22 C 1.50568 * 118.97030 * 179.51098 * 9 5 4 23 23 H 1.09003 * 109.46811 * 262.22106 * 1 2 3 24 24 H 1.09002 * 109.46715 * 22.21994 * 1 2 3 25 25 H 1.09002 * 109.47058 * 142.22201 * 1 2 3 26 26 H 1.07995 * 119.94600 * 359.97438 * 3 2 1 27 27 H 1.07998 * 119.99313 * 180.13075 * 4 3 2 28 28 H 0.96697 * 117.00166 * 180.02562 * 8 6 5 29 29 H 0.96996 * 120.00127 * 180.02562 * 15 14 12 30 30 H 1.09002 * 109.79872 * 164.36220 * 20 11 10 31 31 H 1.08993 * 109.79242 * 285.15676 * 20 11 10 32 32 H 1.09006 * 109.58295 * 56.72184 * 21 20 11 33 33 H 1.09003 * 109.58168 * 177.11928 * 21 20 11 34 34 H 1.09000 * 109.30476 * 279.92750 * 22 9 5 35 35 H 1.08996 * 109.30657 * 39.32004 * 22 9 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1942 1.1982 0.0000 4 6 3.5743 1.2048 0.0005 5 6 4.2784 -0.0005 -0.0012 6 6 5.7558 0.0069 0.0000 7 8 6.3685 -1.0354 -0.1167 8 8 6.4234 1.1698 0.1304 9 6 3.5856 -1.2147 -0.0048 10 6 2.2002 -1.2087 -0.0007 11 7 1.4796 -2.4043 0.0032 12 6 0.1408 -2.4077 0.2867 13 1 -0.2407 -1.8070 1.0991 14 6 -0.7267 -3.1834 -0.4698 15 7 -0.2902 -3.7959 -1.5496 16 14 -2.5139 -3.3579 0.0449 17 1 -3.3187 -2.2827 -0.5887 18 1 -3.0273 -4.6818 -0.3896 19 1 -2.6166 -3.2477 1.5222 20 6 2.1809 -3.6586 -0.3014 21 6 3.5028 -3.6596 0.4775 22 6 4.3682 -2.5009 -0.0178 23 1 -0.3633 -0.1391 1.0183 24 1 -0.3633 0.9514 -0.3886 25 1 -0.3633 -0.8123 -0.6296 26 1 1.6507 2.1314 -0.0004 27 1 4.1098 2.1427 0.0027 28 1 7.3893 1.1244 0.1251 29 1 -0.8966 -4.3377 -2.0784 30 1 1.5703 -4.5072 0.0071 31 1 2.3826 -3.7184 -1.3708 32 1 3.3003 -3.5341 1.5412 33 1 4.0238 -4.6026 0.3117 34 1 4.7009 -2.7101 -1.0345 35 1 5.2393 -2.3993 0.6294 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001600350310.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:56:49 Heat of formation + Delta-G solvation = -64.698749 kcal Electronic energy + Delta-G solvation = -20081.689583 eV Core-core repulsion = 17044.114791 eV Total energy + Delta-G solvation = -3037.574792 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 261.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.64242 -40.41394 -37.47381 -37.12183 -35.77576 -33.69526 -31.68072 -31.02791 -29.10983 -27.00261 -24.79233 -24.20320 -23.67531 -21.67068 -20.44293 -19.34900 -18.79118 -17.90941 -16.83177 -16.72170 -16.43076 -16.06362 -15.67034 -15.21451 -14.94003 -14.69130 -14.26095 -14.12640 -13.96056 -13.38812 -13.34785 -13.01368 -12.89397 -12.69298 -12.50189 -12.41234 -12.24911 -12.16622 -11.91269 -11.71855 -11.35897 -10.83555 -10.65343 -10.33977 -9.41856 -8.37766 -7.95293 -5.74642 -0.02687 0.85568 1.44900 1.45488 1.55073 1.76696 2.19282 2.34256 2.96409 3.17058 3.23027 3.98247 4.03643 4.24699 4.31434 4.35801 4.51211 4.56521 4.78064 4.86873 4.95261 5.00033 5.04259 5.06442 5.13340 5.18152 5.26592 5.44672 5.51813 5.58573 5.70933 5.73632 5.74778 5.95585 6.12273 6.36604 6.85278 7.12230 7.41710 7.88755 8.83581 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.029730 B = 0.007088 C = 0.005931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.581622 B = 3949.172546 C = 4720.162927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.141 4.141 3 C -0.095 4.095 4 C -0.146 4.146 5 C -0.108 4.108 6 C 0.533 3.467 7 O -0.539 6.539 8 O -0.502 6.502 9 C -0.147 4.147 10 C 0.185 3.815 11 N -0.477 5.477 12 C -0.305 4.305 13 H 0.093 0.907 14 C -0.012 4.012 15 N -0.910 5.910 16 Si 0.973 3.027 17 H -0.270 1.270 18 H -0.287 1.287 19 H -0.262 1.262 20 C 0.157 3.843 21 C -0.134 4.134 22 C -0.057 4.057 23 H 0.058 0.942 24 H 0.055 0.945 25 H 0.080 0.920 26 H 0.147 0.853 27 H 0.148 0.852 28 H 0.429 0.571 29 H 0.265 0.735 30 H 0.056 0.944 31 H 0.026 0.974 32 H 0.057 0.943 33 H 0.087 0.913 34 H 0.055 0.945 35 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.317 7.509 3.469 10.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.147 4.147 3 C -0.114 4.114 4 C -0.167 4.167 5 C -0.109 4.109 6 C 0.380 3.620 7 O -0.432 6.432 8 O -0.315 6.315 9 C -0.153 4.153 10 C 0.074 3.926 11 N -0.169 5.169 12 C -0.433 4.433 13 H 0.111 0.889 14 C -0.213 4.213 15 N -0.548 5.548 16 Si 0.797 3.203 17 H -0.195 1.195 18 H -0.213 1.213 19 H -0.186 1.186 20 C 0.033 3.967 21 C -0.173 4.173 22 C -0.094 4.094 23 H 0.076 0.924 24 H 0.074 0.926 25 H 0.098 0.902 26 H 0.164 0.836 27 H 0.166 0.834 28 H 0.291 0.709 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.044 0.956 32 H 0.075 0.925 33 H 0.106 0.894 34 H 0.073 0.927 35 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 5.819 6.860 3.296 9.580 hybrid contribution -0.287 -0.615 -0.178 0.702 sum 5.533 6.245 3.117 8.906 Atomic orbital electron populations 1.21200 0.91013 1.01698 1.01805 1.19976 0.97032 0.91745 1.05928 1.20934 0.93921 0.96891 0.99610 1.21047 0.93979 0.96624 1.05058 1.18720 0.88656 0.94267 1.09286 1.20927 0.88798 0.80811 0.71442 1.90796 1.70618 1.33925 1.47856 1.84538 1.28206 1.34061 1.84703 1.19339 0.91631 0.94938 1.09401 1.18075 0.90183 0.88076 0.96247 1.42571 1.06722 1.01601 1.66048 1.19668 0.82064 1.28573 1.13041 0.88927 1.26233 1.02987 0.97772 0.94328 1.70098 1.37309 1.31967 1.15406 0.85213 0.78539 0.77546 0.79004 1.19524 1.21302 1.18604 1.21132 0.91608 0.87392 0.96599 1.22005 0.96280 0.99326 0.99658 1.20363 0.97058 0.90766 1.01170 0.92392 0.92585 0.90195 0.83570 0.83440 0.70946 0.92553 0.92549 0.95599 0.92451 0.89423 0.92655 0.89276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -4.03 8.10 71.24 0.58 -3.45 16 2 C -0.14 -5.87 5.88 -19.62 -0.12 -5.99 16 3 C -0.09 -3.24 9.64 22.19 0.21 -3.02 16 4 C -0.15 -4.77 9.60 22.54 0.22 -4.55 16 5 C -0.11 -3.98 5.88 -20.06 -0.12 -4.09 16 6 C 0.53 17.22 8.19 70.33 0.58 17.80 16 7 O -0.54 -19.54 14.02 19.93 0.28 -19.26 16 8 O -0.50 -11.43 12.68 -56.25 -0.71 -12.14 16 9 C -0.15 -6.23 5.80 -19.46 -0.11 -6.34 16 10 C 0.19 8.56 6.32 38.24 0.24 8.80 16 11 N -0.48 -23.69 2.89 -510.11 -1.47 -25.17 16 12 C -0.31 -15.29 5.73 84.04 0.48 -14.81 16 13 H 0.09 4.51 5.48 -2.91 -0.02 4.49 16 14 C -0.01 -0.63 4.65 84.86 0.39 -0.23 16 15 N -0.91 -49.24 11.99 21.65 0.26 -48.98 16 16 Si 0.97 39.96 29.56 68.60 2.03 41.99 16 17 H -0.27 -10.77 7.11 99.48 0.71 -10.07 16 18 H -0.29 -11.90 7.11 99.48 0.71 -11.19 16 19 H -0.26 -10.31 7.11 99.48 0.71 -9.61 16 20 C 0.16 7.42 4.96 86.45 0.43 7.85 16 21 C -0.13 -5.31 6.12 30.69 0.19 -5.12 16 22 C -0.06 -2.28 4.38 29.76 0.13 -2.15 16 23 H 0.06 2.23 6.70 -2.39 -0.02 2.22 16 24 H 0.06 1.87 8.02 -2.39 -0.02 1.85 16 25 H 0.08 3.75 5.06 -2.39 -0.01 3.74 16 26 H 0.15 3.95 8.04 -2.91 -0.02 3.93 16 27 H 0.15 3.90 7.61 -2.91 -0.02 3.87 16 28 H 0.43 5.21 9.11 -74.06 -0.67 4.54 16 29 H 0.27 13.75 8.31 -92.71 -0.77 12.98 16 30 H 0.06 2.80 7.43 -2.39 -0.02 2.78 16 31 H 0.03 1.33 8.13 -2.39 -0.02 1.31 16 32 H 0.06 2.27 8.14 -2.38 -0.02 2.25 16 33 H 0.09 2.97 8.14 -2.39 -0.02 2.95 16 34 H 0.06 2.28 8.12 -2.39 -0.02 2.26 16 35 H 0.09 3.47 5.91 -2.39 -0.01 3.46 16 Total: -1.00 -61.05 281.91 3.94 -57.11 By element: Atomic # 1 Polarization: 21.31 SS G_CDS: 0.46 Total: 21.76 kcal Atomic # 6 Polarization: -18.42 SS G_CDS: 3.10 Total: -15.31 kcal Atomic # 7 Polarization: -72.94 SS G_CDS: -1.21 Total: -74.15 kcal Atomic # 8 Polarization: -30.97 SS G_CDS: -0.43 Total: -31.40 kcal Atomic # 14 Polarization: 39.96 SS G_CDS: 2.03 Total: 41.99 kcal Total: -61.05 3.94 -57.11 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600350310.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.590 kcal (2) G-P(sol) polarization free energy of solvation -61.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds