Wall clock time and date at job start Sun Mar 29 2020 23:55:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53780 * 113.61389 * 2 1 4 4 C 1.53783 * 87.08069 * 219.93387 * 3 2 1 5 5 C 1.53002 * 113.61225 * 139.98006 * 4 3 2 6 6 S 1.81399 * 109.47162 * 176.53009 * 5 4 3 7 7 O 1.42096 * 110.54122 * 291.62427 * 6 5 4 8 8 O 1.42097 * 110.54031 * 68.37597 * 6 5 4 9 9 N 1.65601 * 104.44938 * 180.02562 * 6 5 4 10 10 C 1.46499 * 120.00334 * 64.99936 * 9 6 5 11 11 C 1.52997 * 109.47314 * 165.00007 * 10 9 6 12 12 C 1.50707 * 109.47104 * 180.02562 * 11 10 9 13 13 H 1.08001 * 119.99739 * 0.02562 * 12 11 10 14 14 C 1.37870 * 120.00017 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99961 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 119.99972 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47394 * 359.97438 * 16 14 12 18 18 H 1.48508 * 109.47190 * 119.99734 * 16 14 12 19 19 H 1.48500 * 109.47445 * 239.99314 * 16 14 12 20 20 C 1.53784 * 87.17355 * 25.39245 * 4 3 2 21 21 H 1.08997 * 109.47335 * 60.00114 * 1 2 3 22 22 H 1.09004 * 109.47090 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47106 * 299.99536 * 1 2 3 24 24 H 1.09002 * 112.85205 * 131.20270 * 2 1 3 25 25 H 1.09000 * 113.61183 * 105.38977 * 3 2 1 26 26 H 1.08996 * 113.61267 * 334.48748 * 3 2 1 27 27 H 1.08995 * 113.61731 * 270.80010 * 4 3 2 28 28 H 1.09004 * 109.46930 * 56.53143 * 5 4 3 29 29 H 1.09004 * 109.47059 * 296.53541 * 5 4 3 30 30 H 0.97004 * 120.00069 * 245.00518 * 9 6 5 31 31 H 1.09000 * 109.46975 * 285.00431 * 10 9 6 32 32 H 1.09005 * 109.46704 * 44.99638 * 10 9 6 33 33 H 1.08993 * 109.46818 * 300.00170 * 11 10 9 34 34 H 1.08994 * 109.46946 * 60.00535 * 11 10 9 35 35 H 0.96996 * 120.00150 * 180.02562 * 15 14 12 36 36 H 1.08999 * 113.61544 * 89.15215 * 20 4 3 37 37 H 1.09002 * 113.61529 * 220.05890 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1460 1.4090 0.0000 4 6 3.1936 0.8655 -0.9859 5 6 3.5488 1.8464 -2.1051 6 16 4.8609 1.1367 -3.1373 7 8 6.0803 1.0612 -2.4117 8 8 4.3720 0.0195 -3.8667 9 7 5.1450 2.2875 -4.2936 10 6 5.6879 3.5930 -3.9100 11 6 6.2015 4.3178 -5.1557 12 6 6.7605 5.6606 -4.7609 13 1 6.7508 5.9661 -3.7250 14 6 7.2844 6.4988 -5.7220 15 7 7.2966 6.1265 -6.9833 16 14 7.9766 8.1634 -5.2328 17 1 7.8448 8.3422 -3.7645 18 1 9.4101 8.2348 -5.6139 19 1 7.2248 9.2368 -5.9312 20 6 2.1498 -0.1863 -1.3969 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8901 24 1 1.9533 -0.6617 0.7557 25 1 2.5637 1.7029 0.9629 26 1 1.4950 2.1701 -0.4302 27 1 4.0724 0.4419 -0.4997 28 1 3.8957 2.7838 -1.6702 29 1 2.6666 2.0343 -2.7171 30 1 4.9519 2.0973 -5.2250 31 1 4.9049 4.1883 -3.4402 32 1 6.5089 3.4527 -3.2068 33 1 6.9845 3.7226 -5.6253 34 1 5.3806 4.4582 -5.8587 35 1 7.6655 6.7160 -7.6595 36 1 1.4999 0.1378 -2.2097 37 1 2.5706 -1.1785 -1.5601 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001622019626.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:55:01 Heat of formation + Delta-G solvation = -78.761231 kcal Electronic energy + Delta-G solvation = -17704.029315 eV Core-core repulsion = 14801.288679 eV Total energy + Delta-G solvation = -2902.740636 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 261.119 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.48621 -36.83963 -35.70212 -35.35724 -32.74683 -31.83211 -29.13155 -27.90935 -25.92532 -24.49123 -21.80687 -21.13115 -19.75389 -19.01829 -17.36821 -16.48076 -16.31132 -15.79574 -15.59908 -14.62947 -14.44315 -14.27516 -13.93612 -13.74185 -13.53791 -12.78976 -12.66167 -12.54874 -11.94772 -11.88222 -11.79816 -11.70773 -11.62961 -11.29135 -11.12972 -10.95488 -10.84915 -10.61051 -10.53694 -10.39297 -10.08114 -9.59148 -9.26756 -8.86456 -8.42478 -6.09380 -4.13030 0.51146 3.07118 3.27208 3.35140 3.38872 3.94962 4.14659 4.26327 4.35974 4.39689 4.47582 4.56332 4.86856 5.02472 5.20352 5.25159 5.27439 5.46725 5.49332 5.54267 5.55260 5.65911 5.76206 5.81409 5.85404 6.04474 6.15648 6.25391 6.46230 6.71913 7.43796 7.55086 7.64642 7.89402 8.26741 8.93199 9.51788 11.02087 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.033144 B = 0.004018 C = 0.003780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.587629 B = 6967.398943 C = 7406.359986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.117 4.117 3 C -0.121 4.121 4 C -0.106 4.106 5 C -0.622 4.622 6 S 2.609 3.391 7 O -0.961 6.961 8 O -0.968 6.968 9 N -1.116 6.116 10 C 0.115 3.885 11 C 0.017 3.983 12 C -0.524 4.524 13 H 0.060 0.940 14 C 0.058 3.942 15 N -0.892 5.892 16 Si 0.896 3.104 17 H -0.272 1.272 18 H -0.283 1.283 19 H -0.284 1.284 20 C -0.140 4.140 21 H 0.056 0.944 22 H 0.055 0.945 23 H 0.056 0.944 24 H 0.091 0.909 25 H 0.071 0.929 26 H 0.086 0.914 27 H 0.101 0.899 28 H 0.135 0.865 29 H 0.132 0.868 30 H 0.415 0.585 31 H 0.050 0.950 32 H 0.068 0.932 33 H 0.026 0.974 34 H 0.024 0.976 35 H 0.262 0.738 36 H 0.090 0.910 37 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.549 -10.122 12.264 20.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.136 4.136 3 C -0.160 4.160 4 C -0.126 4.126 5 C -0.750 4.750 6 S 2.701 3.299 7 O -0.950 6.950 8 O -0.958 6.958 9 N -0.877 5.877 10 C -0.010 4.010 11 C -0.022 4.022 12 C -0.564 4.564 13 H 0.078 0.922 14 C -0.144 4.144 15 N -0.531 5.531 16 Si 0.724 3.276 17 H -0.196 1.196 18 H -0.209 1.209 19 H -0.210 1.210 20 C -0.177 4.177 21 H 0.075 0.925 22 H 0.074 0.926 23 H 0.075 0.925 24 H 0.109 0.891 25 H 0.090 0.910 26 H 0.105 0.895 27 H 0.120 0.880 28 H 0.153 0.847 29 H 0.150 0.850 30 H 0.250 0.750 31 H 0.069 0.931 32 H 0.086 0.914 33 H 0.044 0.956 34 H 0.042 0.958 35 H 0.071 0.929 36 H 0.108 0.892 37 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -12.007 -10.842 12.361 20.359 hybrid contribution -0.092 1.554 -0.164 1.565 sum -12.099 -9.288 12.197 19.530 Atomic orbital electron populations 1.21720 0.94643 1.01740 1.01841 1.22500 0.95803 0.97557 0.97697 1.23001 0.97100 0.96867 0.99020 1.22233 0.98729 0.95964 0.95695 1.30608 1.20310 1.11412 1.12700 1.04895 0.76080 0.73968 0.74967 1.93587 1.40870 1.86057 1.74534 1.93560 1.82729 1.49512 1.70029 1.55567 1.80307 1.30265 1.21519 1.21652 0.96968 0.80818 1.01522 1.19283 0.96813 0.94796 0.91279 1.21134 1.40080 1.01035 0.94103 0.92204 1.25013 0.95825 0.98596 0.94925 1.69969 1.45713 1.37011 1.00415 0.86472 0.78763 0.83662 0.78712 1.19619 1.20917 1.20989 1.23299 0.97660 0.99315 0.97417 0.92482 0.92604 0.92530 0.89093 0.91032 0.89499 0.88041 0.84690 0.84968 0.75050 0.93122 0.91355 0.95562 0.95798 0.92865 0.89191 0.90551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.00 9.71 37.16 0.36 -0.64 16 2 C -0.12 -0.95 4.36 -89.72 -0.39 -1.34 16 3 C -0.12 -1.04 7.21 -25.92 -0.19 -1.23 16 4 C -0.11 -1.09 3.64 -89.80 -0.33 -1.42 16 5 C -0.62 -6.85 5.90 37.16 0.22 -6.64 16 6 S 2.61 39.31 5.46 -107.50 -0.59 38.72 16 7 O -0.96 -17.87 17.49 -57.54 -1.01 -18.88 16 8 O -0.97 -16.41 18.08 -57.54 -1.04 -17.45 16 9 N -1.12 -18.51 5.89 -10.61 -0.06 -18.57 16 10 C 0.12 2.24 6.07 -4.04 -0.02 2.21 16 11 C 0.02 0.42 5.12 -27.88 -0.14 0.27 16 12 C -0.52 -14.25 9.11 -34.44 -0.31 -14.56 16 13 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 14 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 15 N -0.89 -26.10 13.29 55.43 0.74 -25.37 16 16 Si 0.90 21.07 29.54 -169.99 -5.02 16.05 16 17 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 18 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 20 C -0.14 -1.34 7.20 -25.82 -0.19 -1.53 16 21 H 0.06 0.40 7.96 -51.93 -0.41 -0.01 16 22 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 23 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 24 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.09 0.71 8.06 -51.93 -0.42 0.29 16 27 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.13 1.37 8.14 -51.92 -0.42 0.94 16 29 H 0.13 1.23 7.88 -51.92 -0.41 0.82 16 30 H 0.42 6.56 8.62 -34.47 -0.30 6.26 16 31 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.07 1.36 7.69 -51.93 -0.40 0.96 16 33 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 36 H 0.09 0.83 7.75 -51.93 -0.40 0.43 16 37 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 LS Contribution 320.25 15.07 4.83 4.83 Total: -1.00 -33.09 320.25 -9.35 -42.44 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -6.11 Total: 1.55 kcal Atomic # 6 Polarization: -22.24 SS G_CDS: -1.09 Total: -23.33 kcal Atomic # 7 Polarization: -44.61 SS G_CDS: 0.67 Total: -43.94 kcal Atomic # 8 Polarization: -34.28 SS G_CDS: -2.05 Total: -36.32 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 16 Polarization: 39.31 SS G_CDS: -0.59 Total: 38.72 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -33.09 -9.35 -42.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001622019626.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.316 kcal (2) G-P(sol) polarization free energy of solvation -33.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds