Wall clock time and date at job start Mon Mar 30 2020 01:00:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46508 * 119.99793 * 2 1 4 4 C 1.50701 * 109.47047 * 89.99842 * 3 2 1 5 5 H 1.08002 * 119.99584 * 359.97438 * 4 3 2 6 6 C 1.37877 * 119.99680 * 179.97438 * 4 3 2 7 7 N 1.31514 * 120.00127 * 359.97438 * 6 4 3 8 8 Si 1.86799 * 119.99773 * 180.02562 * 6 4 3 9 9 H 1.48499 * 109.47123 * 179.97438 * 8 6 4 10 10 H 1.48501 * 109.47053 * 300.00090 * 8 6 4 11 11 H 1.48505 * 109.46949 * 59.99889 * 8 6 4 12 12 C 1.34769 * 120.00104 * 180.02562 * 2 1 3 13 13 O 1.21283 * 120.00003 * 184.41776 * 12 2 1 14 14 C 1.50699 * 120.00158 * 4.41010 * 12 2 1 15 15 H 1.09007 * 110.66524 * 53.23487 * 14 12 2 16 16 C 1.54702 * 110.75279 * 290.01756 * 14 12 2 17 17 C 1.51650 * 101.92978 * 266.95661 * 16 14 12 18 18 C 1.37740 * 132.18259 * 164.59310 * 17 16 14 19 19 C 1.38347 * 119.97770 * 180.39984 * 18 17 16 20 20 C 1.38287 * 119.77146 * 359.95119 * 19 18 17 21 21 C 1.37939 * 120.34887 * 359.87811 * 20 19 18 22 22 C 1.38890 * 107.03413 * 344.62190 * 17 16 14 23 23 O 1.36138 * 111.23410 * 358.91600 * 22 17 16 24 24 H 1.09004 * 109.46810 * 88.60625 * 1 2 3 25 25 H 1.08993 * 109.47063 * 208.60586 * 1 2 3 26 26 H 1.08995 * 109.47039 * 328.60656 * 1 2 3 27 27 H 1.08996 * 109.46753 * 329.99772 * 3 2 1 28 28 H 1.08997 * 109.46708 * 209.99949 * 3 2 1 29 29 H 0.96998 * 120.00134 * 0.02562 * 7 6 4 30 30 H 1.09008 * 110.94028 * 25.11353 * 16 14 12 31 31 H 1.08999 * 110.94655 * 148.76069 * 16 14 12 32 32 H 1.07998 * 120.00867 * 0.36224 * 18 17 16 33 33 H 1.07997 * 120.11736 * 179.97438 * 19 18 17 34 34 H 1.07997 * 119.82956 * 179.85444 * 20 19 18 35 35 H 1.07993 * 119.88213 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7039 1.4208 5 1 2.0973 1.0962 2.2417 6 6 3.1268 2.8776 1.6727 7 7 3.5550 3.6172 0.6731 8 14 3.4387 3.4165 3.4339 9 1 4.1822 4.7020 3.4339 10 1 2.1414 3.5944 4.1342 11 1 4.2411 2.3812 4.1336 12 6 2.1389 -1.1671 -0.0005 13 8 3.3490 -1.1687 0.0804 14 6 1.3888 -2.4703 -0.1015 15 1 0.7238 -2.4655 -0.9652 16 6 0.5972 -2.7492 1.1981 17 6 1.5803 -3.5900 1.9896 18 6 1.6335 -3.9439 3.3197 19 6 2.6711 -4.7323 3.7843 20 6 3.6513 -5.1629 2.9090 21 6 3.5981 -4.8126 1.5759 22 6 2.5552 -4.0217 1.0996 23 8 2.3011 -3.5797 -0.1627 24 1 -0.3633 0.0250 -1.0274 25 1 -0.3633 -0.9022 0.4920 26 1 -0.3633 0.8772 0.5353 27 1 1.6084 2.0284 -0.5139 28 1 3.1499 1.1384 -0.5138 29 1 3.3934 3.3372 -0.2414 30 1 0.3686 -1.8209 1.7218 31 1 -0.3136 -3.3095 0.9869 32 1 0.8657 -3.6056 3.9998 33 1 2.7152 -5.0108 4.8268 34 1 4.4630 -5.7764 3.2712 35 1 4.3679 -5.1527 0.8991 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019833716.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:09 Heat of formation + Delta-G solvation = -32.263486 kcal Electronic energy + Delta-G solvation = -19623.370533 eV Core-core repulsion = 16587.202239 eV Total energy + Delta-G solvation = -3036.168294 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 261.115 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.35732 -38.73473 -37.11638 -35.06675 -33.19373 -32.39419 -29.97161 -29.65237 -27.34207 -26.06737 -24.12663 -22.76467 -22.12207 -21.59934 -19.27613 -17.40204 -16.97736 -16.76602 -16.56107 -15.73972 -15.10887 -14.80596 -14.24638 -13.93340 -13.71738 -13.42337 -13.19657 -13.00551 -12.64910 -12.53299 -12.33258 -11.94710 -11.61390 -11.47601 -11.42481 -11.32725 -10.94535 -10.73102 -10.60236 -10.11274 -9.19424 -9.13343 -8.81975 -8.41086 -7.99263 -7.71605 -6.41124 -4.13189 1.35092 1.45801 3.01930 3.26052 3.40950 3.46368 3.63149 3.77897 3.84492 4.40075 4.49950 4.53831 4.80541 4.90976 5.07775 5.20909 5.27568 5.34090 5.39339 5.46864 5.52784 5.64123 5.71921 5.77467 6.04045 6.07722 6.36389 6.46742 6.52183 6.62714 6.73093 7.05040 7.23782 7.30078 7.99399 8.14487 8.38769 8.73267 8.87382 9.56200 10.96363 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.020396 B = 0.006414 C = 0.005597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.467813 B = 4364.326032 C = 5001.645403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.594 5.594 3 C 0.237 3.763 4 C -0.606 4.606 5 H 0.051 0.949 6 C 0.020 3.980 7 N -0.908 5.908 8 Si 1.070 2.930 9 H -0.281 1.281 10 H -0.288 1.288 11 H -0.287 1.287 12 C 0.489 3.511 13 O -0.518 6.518 14 C 0.064 3.936 15 H 0.135 0.865 16 C -0.102 4.102 17 C -0.173 4.173 18 C -0.068 4.068 19 C -0.152 4.152 20 C -0.087 4.087 21 C -0.135 4.135 22 C 0.118 3.882 23 O -0.278 6.278 24 H 0.048 0.952 25 H 0.065 0.935 26 H 0.078 0.922 27 H 0.024 0.976 28 H 0.033 0.967 29 H 0.267 0.733 30 H 0.103 0.897 31 H 0.099 0.901 32 H 0.124 0.876 33 H 0.126 0.874 34 H 0.129 0.871 35 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.496 -15.523 2.365 17.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.328 5.328 3 C 0.117 3.883 4 C -0.645 4.645 5 H 0.069 0.931 6 C -0.184 4.184 7 N -0.544 5.544 8 Si 0.898 3.102 9 H -0.206 1.206 10 H -0.214 1.214 11 H -0.214 1.214 12 C 0.273 3.727 13 O -0.393 6.393 14 C 0.004 3.996 15 H 0.152 0.848 16 C -0.140 4.140 17 C -0.173 4.173 18 C -0.086 4.086 19 C -0.171 4.171 20 C -0.105 4.105 21 C -0.154 4.154 22 C 0.073 3.927 23 O -0.191 6.191 24 H 0.067 0.933 25 H 0.083 0.917 26 H 0.096 0.904 27 H 0.042 0.958 28 H 0.051 0.949 29 H 0.077 0.923 30 H 0.121 0.879 31 H 0.118 0.882 32 H 0.142 0.858 33 H 0.144 0.856 34 H 0.147 0.853 35 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -7.062 -14.378 3.091 16.315 hybrid contribution -0.901 -1.009 -0.902 1.626 sum -7.963 -15.388 2.189 17.464 Atomic orbital electron populations 1.21907 0.81172 1.03259 1.00980 1.47921 1.06198 1.07094 1.71537 1.19375 0.91926 0.78688 0.98308 1.22218 1.40888 1.09560 0.91808 0.93074 1.25813 0.93228 0.93306 1.06063 1.70807 1.43933 1.39611 1.00087 0.83523 0.76478 0.76353 0.73825 1.20573 1.21409 1.21363 1.20495 0.88497 0.85040 0.78656 1.90717 1.13760 1.86556 1.48279 1.23391 0.89680 0.85926 1.00624 0.84798 1.21881 0.97655 1.00823 0.93596 1.20721 0.97553 1.03859 0.95205 1.20264 0.98417 0.96821 0.93124 1.20980 0.95686 1.00626 0.99773 1.20839 0.98506 0.99014 0.92110 1.20252 0.96905 1.02233 0.95983 1.19565 0.93961 0.95157 0.84018 1.86875 1.63676 1.44416 1.24095 0.93341 0.91700 0.90367 0.95784 0.94932 0.92251 0.87888 0.88236 0.85831 0.85597 0.85288 0.85493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.07 9.92 59.85 0.59 1.66 16 2 N -0.59 -12.64 2.86 -182.95 -0.52 -13.16 16 3 C 0.24 6.20 4.45 -5.19 -0.02 6.18 16 4 C -0.61 -17.54 9.39 -34.44 -0.32 -17.86 16 5 H 0.05 1.49 7.81 -52.49 -0.41 1.08 16 6 C 0.02 0.59 5.46 -17.82 -0.10 0.49 16 7 N -0.91 -27.92 13.65 55.43 0.76 -27.16 16 8 Si 1.07 25.87 29.90 -169.99 -5.08 20.79 16 9 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 10 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 12 C 0.49 10.63 6.95 -10.99 -0.08 10.56 16 13 O -0.52 -14.01 16.08 -13.49 -0.22 -14.23 16 14 C 0.06 1.04 3.23 -26.99 -0.09 0.95 16 15 H 0.13 1.66 8.02 -51.93 -0.42 1.24 16 16 C -0.10 -1.39 5.36 -26.52 -0.14 -1.54 16 17 C -0.17 -2.69 6.26 -104.09 -0.65 -3.34 16 18 C -0.07 -0.93 10.03 -39.72 -0.40 -1.33 16 19 C -0.15 -1.90 10.07 -39.52 -0.40 -2.29 16 20 C -0.09 -1.11 10.02 -39.67 -0.40 -1.50 16 21 C -0.14 -2.05 10.06 -39.30 -0.40 -2.45 16 22 C 0.12 2.04 6.83 -38.95 -0.27 1.77 16 23 O -0.28 -5.04 10.43 -39.22 -0.41 -5.45 16 24 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.06 0.78 4.41 -51.93 -0.23 0.55 16 26 H 0.08 1.23 8.08 -51.93 -0.42 0.81 16 27 H 0.02 0.62 7.94 -51.93 -0.41 0.21 16 28 H 0.03 0.96 7.35 -51.93 -0.38 0.58 16 29 H 0.27 8.14 7.22 -40.82 -0.29 7.85 16 30 H 0.10 1.44 6.27 -51.92 -0.33 1.12 16 31 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.12 1.38 8.06 -52.49 -0.42 0.95 16 33 H 0.13 1.20 8.06 -52.49 -0.42 0.77 16 34 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 35 H 0.13 1.73 8.06 -52.49 -0.42 1.31 16 LS Contribution 297.90 15.07 4.49 4.49 Total: -1.00 -36.36 297.90 -7.87 -44.23 By element: Atomic # 1 Polarization: 3.42 SS G_CDS: -4.22 Total: -0.80 kcal Atomic # 6 Polarization: -6.03 SS G_CDS: -2.66 Total: -8.70 kcal Atomic # 7 Polarization: -40.56 SS G_CDS: 0.23 Total: -40.32 kcal Atomic # 8 Polarization: -19.05 SS G_CDS: -0.63 Total: -19.68 kcal Atomic # 14 Polarization: 25.87 SS G_CDS: -5.08 Total: 20.79 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -36.36 -7.87 -44.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019833716.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.965 kcal (2) G-P(sol) polarization free energy of solvation -36.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds