Wall clock time and date at job start Mon Mar 30 2020 01:00:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46508 * 119.99793 * 2 1 4 4 C 1.50701 * 109.47047 * 89.99842 * 3 2 1 5 5 H 1.08002 * 119.99584 * 359.97438 * 4 3 2 6 6 C 1.37877 * 119.99680 * 179.97438 * 4 3 2 7 7 N 1.31514 * 120.00127 * 359.97438 * 6 4 3 8 8 Si 1.86799 * 119.99773 * 180.02562 * 6 4 3 9 9 H 1.48499 * 109.47123 * 179.97438 * 8 6 4 10 10 H 1.48501 * 109.47053 * 300.00090 * 8 6 4 11 11 H 1.48505 * 109.46949 * 59.99889 * 8 6 4 12 12 C 1.34769 * 120.00104 * 180.02562 * 2 1 3 13 13 O 1.21283 * 120.00003 * 184.41776 * 12 2 1 14 14 C 1.50699 * 120.00158 * 4.41010 * 12 2 1 15 15 H 1.09007 * 110.66524 * 53.23487 * 14 12 2 16 16 C 1.54702 * 110.75279 * 290.01756 * 14 12 2 17 17 C 1.51650 * 101.92978 * 266.95661 * 16 14 12 18 18 C 1.37740 * 132.18259 * 164.59310 * 17 16 14 19 19 C 1.38347 * 119.97770 * 180.39984 * 18 17 16 20 20 C 1.38287 * 119.77146 * 359.95119 * 19 18 17 21 21 C 1.37939 * 120.34887 * 359.87811 * 20 19 18 22 22 C 1.38890 * 107.03413 * 344.62190 * 17 16 14 23 23 O 1.36138 * 111.23410 * 358.91600 * 22 17 16 24 24 H 1.09004 * 109.46810 * 88.60625 * 1 2 3 25 25 H 1.08993 * 109.47063 * 208.60586 * 1 2 3 26 26 H 1.08995 * 109.47039 * 328.60656 * 1 2 3 27 27 H 1.08996 * 109.46753 * 329.99772 * 3 2 1 28 28 H 1.08997 * 109.46708 * 209.99949 * 3 2 1 29 29 H 0.96998 * 120.00134 * 0.02562 * 7 6 4 30 30 H 1.09008 * 110.94028 * 25.11353 * 16 14 12 31 31 H 1.08999 * 110.94655 * 148.76069 * 16 14 12 32 32 H 1.07998 * 120.00867 * 0.36224 * 18 17 16 33 33 H 1.07997 * 120.11736 * 179.97438 * 19 18 17 34 34 H 1.07997 * 119.82956 * 179.85444 * 20 19 18 35 35 H 1.07993 * 119.88213 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7039 1.4208 5 1 2.0973 1.0962 2.2417 6 6 3.1268 2.8776 1.6727 7 7 3.5550 3.6172 0.6731 8 14 3.4387 3.4165 3.4339 9 1 4.1822 4.7020 3.4339 10 1 2.1414 3.5944 4.1342 11 1 4.2411 2.3812 4.1336 12 6 2.1389 -1.1671 -0.0005 13 8 3.3490 -1.1687 0.0804 14 6 1.3888 -2.4703 -0.1015 15 1 0.7238 -2.4655 -0.9652 16 6 0.5972 -2.7492 1.1981 17 6 1.5803 -3.5900 1.9896 18 6 1.6335 -3.9439 3.3197 19 6 2.6711 -4.7323 3.7843 20 6 3.6513 -5.1629 2.9090 21 6 3.5981 -4.8126 1.5759 22 6 2.5552 -4.0217 1.0996 23 8 2.3011 -3.5797 -0.1627 24 1 -0.3633 0.0250 -1.0274 25 1 -0.3633 -0.9022 0.4920 26 1 -0.3633 0.8772 0.5353 27 1 1.6084 2.0284 -0.5139 28 1 3.1499 1.1384 -0.5138 29 1 3.3934 3.3372 -0.2414 30 1 0.3686 -1.8209 1.7218 31 1 -0.3136 -3.3095 0.9869 32 1 0.8657 -3.6056 3.9998 33 1 2.7152 -5.0108 4.8268 34 1 4.4630 -5.7764 3.2712 35 1 4.3679 -5.1527 0.8991 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019833716.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:09 Heat of formation + Delta-G solvation = -56.276317 kcal Electronic energy + Delta-G solvation = -19624.411808 eV Core-core repulsion = 16587.202239 eV Total energy + Delta-G solvation = -3037.209568 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 261.115 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.59017 -40.29771 -38.28631 -36.88186 -35.15736 -33.71597 -31.03756 -30.98761 -29.07689 -27.57783 -25.77627 -24.43383 -23.33186 -22.68472 -20.84228 -19.12459 -18.70551 -18.09828 -17.86391 -16.95063 -16.71627 -16.20588 -15.80531 -15.56959 -15.11482 -14.84040 -14.38324 -14.32754 -13.99996 -13.92698 -13.82084 -13.56949 -13.23083 -13.01234 -12.68339 -12.61338 -12.59919 -12.47859 -11.98294 -11.77511 -11.24476 -10.79316 -10.65425 -9.86590 -9.57038 -9.15132 -8.73513 -6.49250 0.29946 0.37252 1.44997 1.49712 1.55605 1.74825 1.89927 2.34439 2.50511 2.76690 3.06053 3.28409 3.37168 3.46467 3.87929 4.09208 4.18672 4.22650 4.29271 4.47969 4.54155 4.56550 4.62808 4.66996 4.70180 4.86409 4.87776 5.05741 5.33861 5.40016 5.44324 5.50550 5.60623 5.76590 6.07875 6.14391 6.40215 6.51013 7.15559 7.31532 8.61720 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.020396 B = 0.006414 C = 0.005597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.467813 B = 4364.326032 C = 5001.645403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.597 5.597 3 C 0.245 3.755 4 C -0.616 4.616 5 H 0.045 0.955 6 C -0.032 4.032 7 N -0.930 5.930 8 Si 1.116 2.884 9 H -0.278 1.278 10 H -0.257 1.257 11 H -0.283 1.283 12 C 0.477 3.523 13 O -0.588 6.588 14 C 0.070 3.930 15 H 0.178 0.822 16 C -0.093 4.093 17 C -0.191 4.191 18 C -0.079 4.079 19 C -0.149 4.149 20 C -0.089 4.089 21 C -0.158 4.158 22 C 0.073 3.927 23 O -0.300 6.300 24 H 0.081 0.919 25 H 0.103 0.897 26 H 0.071 0.929 27 H 0.027 0.973 28 H -0.012 1.012 29 H 0.255 0.745 30 H 0.100 0.900 31 H 0.148 0.852 32 H 0.150 0.850 33 H 0.161 0.839 34 H 0.160 0.840 35 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.790 -16.811 4.407 20.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.329 5.329 3 C 0.123 3.877 4 C -0.655 4.655 5 H 0.063 0.937 6 C -0.230 4.230 7 N -0.567 5.567 8 Si 0.937 3.063 9 H -0.203 1.203 10 H -0.181 1.181 11 H -0.209 1.209 12 C 0.265 3.735 13 O -0.469 6.469 14 C 0.011 3.989 15 H 0.195 0.805 16 C -0.129 4.129 17 C -0.191 4.191 18 C -0.096 4.096 19 C -0.166 4.166 20 C -0.106 4.106 21 C -0.177 4.177 22 C 0.029 3.971 23 O -0.213 6.213 24 H 0.099 0.901 25 H 0.122 0.878 26 H 0.089 0.911 27 H 0.045 0.955 28 H 0.006 0.994 29 H 0.064 0.936 30 H 0.119 0.881 31 H 0.165 0.835 32 H 0.168 0.832 33 H 0.178 0.822 34 H 0.178 0.822 35 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -9.432 -15.690 5.117 19.009 hybrid contribution -0.158 -0.673 -1.540 1.689 sum -9.590 -16.363 3.577 19.301 Atomic orbital electron populations 1.22289 0.77089 1.04926 1.03580 1.47966 1.08682 1.05395 1.70896 1.18923 0.90825 0.81290 0.96613 1.22503 1.40687 1.09499 0.92763 0.93683 1.27372 0.92545 0.93640 1.09418 1.70927 1.45417 1.40397 0.99982 0.82960 0.77877 0.76047 0.69422 1.20279 1.18125 1.20908 1.21687 0.88122 0.86906 0.76806 1.90669 1.17029 1.87767 1.51396 1.23568 0.89138 0.82161 1.04028 0.80463 1.21975 0.98490 1.00967 0.91486 1.21115 0.97781 1.04254 0.95994 1.20710 0.99437 0.96706 0.92786 1.21483 0.94650 0.99181 1.01332 1.21265 0.99488 0.98794 0.91087 1.20614 0.96928 1.02707 0.97425 1.20016 0.95722 0.97119 0.84276 1.86840 1.64628 1.44681 1.25183 0.90094 0.87848 0.91051 0.95524 0.99434 0.93569 0.88146 0.83461 0.83213 0.82185 0.82223 0.85461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.73 9.92 127.77 1.27 2.99 16 2 N -0.60 -25.43 2.86 -851.13 -2.43 -27.86 16 3 C 0.25 13.34 4.45 85.63 0.38 13.72 16 4 C -0.62 -36.35 9.39 25.60 0.24 -36.11 16 5 H 0.04 2.65 7.81 -2.91 -0.02 2.63 16 6 C -0.03 -1.87 5.46 84.65 0.46 -1.41 16 7 N -0.93 -58.62 13.65 21.45 0.29 -58.32 16 8 Si 1.12 51.74 29.90 68.60 2.05 53.79 16 9 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 10 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 11 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 12 C 0.48 21.04 6.95 87.66 0.61 21.65 16 13 O -0.59 -33.53 16.08 15.17 0.24 -33.29 16 14 C 0.07 2.17 3.23 30.43 0.10 2.27 16 15 H 0.18 3.78 8.02 -2.38 -0.02 3.76 16 16 C -0.09 -2.23 5.36 30.73 0.16 -2.07 16 17 C -0.19 -5.61 6.26 -19.52 -0.12 -5.73 16 18 C -0.08 -1.92 10.03 22.18 0.22 -1.70 16 19 C -0.15 -3.26 10.07 22.31 0.22 -3.03 16 20 C -0.09 -2.11 10.02 22.21 0.22 -1.89 16 21 C -0.16 -4.82 10.06 22.45 0.23 -4.60 16 22 C 0.07 2.52 6.83 22.68 0.15 2.67 16 23 O -0.30 -10.91 10.43 -76.91 -0.80 -11.72 16 24 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 25 H 0.10 2.06 4.41 -2.39 -0.01 2.05 16 26 H 0.07 2.10 8.08 -2.39 -0.02 2.08 16 27 H 0.03 1.42 7.94 -2.39 -0.02 1.40 16 28 H -0.01 -0.78 7.35 -2.39 -0.02 -0.80 16 29 H 0.25 16.23 7.22 -92.71 -0.67 15.56 16 30 H 0.10 2.48 6.27 -2.38 -0.01 2.46 16 31 H 0.15 2.15 8.14 -2.39 -0.02 2.13 16 32 H 0.15 2.76 8.06 -2.91 -0.02 2.74 16 33 H 0.16 2.35 8.06 -2.91 -0.02 2.32 16 34 H 0.16 2.65 8.06 -2.91 -0.02 2.63 16 35 H 0.13 3.63 8.06 -2.91 -0.02 3.61 16 Total: -1.00 -84.98 297.90 4.70 -80.28 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: 1.20 Total: 10.35 kcal Atomic # 6 Polarization: -17.38 SS G_CDS: 4.15 Total: -13.23 kcal Atomic # 7 Polarization: -84.05 SS G_CDS: -2.14 Total: -86.19 kcal Atomic # 8 Polarization: -44.44 SS G_CDS: -0.56 Total: -45.00 kcal Atomic # 14 Polarization: 51.74 SS G_CDS: 2.05 Total: 53.79 kcal Total: -84.98 4.70 -80.28 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019833716.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.001 kcal (2) G-P(sol) polarization free energy of solvation -84.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds