Wall clock time and date at job start Mon Mar 30 2020 00:19:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08998 * 109.70301 * 2 1 4 4 C 1.53194 * 109.58526 * 120.35830 * 2 1 3 5 5 C 1.53039 * 109.31428 * 174.42360 * 4 2 1 6 6 C 1.53042 * 109.53867 * 298.63300 * 5 4 2 7 7 C 1.53201 * 109.31238 * 61.36253 * 6 5 4 8 8 N 1.46927 * 108.88999 * 305.29786 * 7 6 5 9 9 S 1.65602 * 120.62621 * 233.67617 * 8 7 6 10 10 O 1.42102 * 104.27857 * 14.01678 * 9 8 7 11 11 O 1.42104 * 104.27446 * 141.87270 * 9 8 7 12 12 C 1.81398 * 104.45035 * 257.94275 * 9 8 7 13 13 C 1.52999 * 109.46869 * 180.02562 * 12 9 8 14 14 C 1.50703 * 109.47157 * 180.02562 * 13 12 9 15 15 H 1.08002 * 119.99642 * 0.02562 * 14 13 12 16 16 C 1.37872 * 120.00209 * 179.97438 * 14 13 12 17 17 N 1.31515 * 120.00194 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00252 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.46851 * 59.99857 * 18 16 14 20 20 H 1.48493 * 109.47414 * 180.02562 * 18 16 14 21 21 H 1.48509 * 109.46926 * 300.00368 * 18 16 14 22 22 H 1.09002 * 109.47709 * 308.75322 * 1 2 3 23 23 H 1.09000 * 109.47236 * 68.75701 * 1 2 3 24 24 H 1.09005 * 109.47126 * 188.75429 * 1 2 3 25 25 H 1.09002 * 109.50179 * 54.46742 * 4 2 1 26 26 H 1.09008 * 109.52376 * 294.38660 * 4 2 1 27 27 H 1.08998 * 109.46824 * 178.61122 * 5 4 2 28 28 H 1.09006 * 109.46310 * 58.65150 * 5 4 2 29 29 H 1.09000 * 109.49774 * 301.41404 * 6 5 4 30 30 H 1.08999 * 109.52590 * 181.33461 * 6 5 4 31 31 H 1.08997 * 109.58176 * 65.15788 * 7 6 5 32 32 H 1.09001 * 109.58351 * 185.43777 * 7 6 5 33 33 H 1.08996 * 109.46949 * 300.00252 * 12 9 8 34 34 H 1.08998 * 109.46981 * 60.00815 * 12 9 8 35 35 H 1.09000 * 109.47488 * 300.00313 * 13 12 9 36 36 H 1.09004 * 109.47538 * 60.00131 * 13 12 9 37 37 H 0.97000 * 120.00338 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0434 -0.7295 1.2454 5 6 3.5674 -0.8481 1.1702 6 6 3.9569 -1.6658 -0.0634 7 6 3.4650 -0.9470 -1.3238 8 7 2.0221 -0.6998 -1.1979 9 16 0.9742 -1.2015 -2.3779 10 8 1.7402 -2.1009 -3.1676 11 8 -0.1708 -1.6465 -1.6635 12 6 0.5939 0.3040 -3.3156 13 6 -0.3782 -0.0326 -4.4481 14 6 -0.6937 1.2180 -5.2276 15 1 -0.2452 2.1587 -4.9439 16 6 -1.5539 1.1612 -6.3036 17 7 -2.0996 0.0156 -6.6494 18 14 -1.9444 2.7112 -7.2703 19 1 -0.6914 3.2670 -7.8416 20 1 -2.8880 2.3847 -8.3693 21 1 -2.5644 3.7144 -6.3677 22 1 -0.3634 0.6433 0.8014 23 1 -0.3634 0.3723 -0.9578 24 1 -0.3634 -1.0157 0.1564 25 1 1.6028 -1.7254 1.2914 26 1 1.7659 -0.1674 2.1372 27 1 3.9378 -1.3449 2.0669 28 1 4.0061 0.1473 1.0994 29 1 3.4982 -2.6529 -0.0052 30 1 5.0411 -1.7702 -0.1038 31 1 3.9903 0.0019 -1.4316 32 1 3.6541 -1.5707 -2.1974 33 1 0.1384 1.0396 -2.6527 34 1 1.5132 0.7127 -3.7350 35 1 0.0769 -0.7684 -5.1111 36 1 -1.2976 -0.4411 -4.0285 37 1 -2.7051 -0.0243 -7.4062 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020180214.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:19:35 Heat of formation + Delta-G solvation = -106.298944 kcal Electronic energy + Delta-G solvation = -18799.388472 eV Core-core repulsion = 15895.453711 eV Total energy + Delta-G solvation = -2903.934761 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 261.119 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.69472 -38.34438 -36.97713 -35.92373 -33.81118 -33.16020 -33.00281 -28.12731 -27.61514 -25.08285 -23.55543 -22.98999 -21.37912 -19.79106 -18.84222 -17.98619 -17.46569 -17.05999 -16.54986 -16.19203 -15.48389 -15.18341 -15.14558 -14.87477 -14.50963 -14.35309 -13.87969 -13.72907 -13.35516 -13.26198 -12.96676 -12.90536 -12.82908 -12.64877 -12.22577 -12.22317 -12.12984 -11.85507 -11.74799 -11.61402 -11.44421 -11.18036 -11.06413 -10.65405 -9.82973 -8.27171 -6.42042 -0.68599 1.39834 1.43663 1.51974 1.76433 2.37291 2.85563 3.05852 3.23001 3.56524 3.86900 3.98487 4.02685 4.10152 4.19388 4.30059 4.43045 4.49332 4.65688 4.76854 4.80489 4.85613 4.89374 5.04173 5.06235 5.21768 5.24792 5.25025 5.29263 5.35615 5.51389 5.58547 5.66621 5.80054 6.04437 6.71129 7.28378 8.84998 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.037452 B = 0.005270 C = 0.005162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.441219 B = 5311.583712 C = 5422.855113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.148 3.852 3 H 0.101 0.899 4 C -0.127 4.127 5 C -0.113 4.113 6 C -0.132 4.132 7 C 0.104 3.896 8 N -0.995 5.995 9 S 2.608 3.392 10 O -1.002 7.002 11 O -0.985 6.985 12 C -0.590 4.590 13 C 0.023 3.977 14 C -0.542 4.542 15 H 0.075 0.925 16 C -0.003 4.003 17 N -0.935 5.935 18 Si 0.975 3.025 19 H -0.263 1.263 20 H -0.283 1.283 21 H -0.262 1.262 22 H 0.097 0.903 23 H 0.042 0.958 24 H 0.077 0.923 25 H 0.051 0.949 26 H 0.097 0.903 27 H 0.077 0.923 28 H 0.080 0.920 29 H 0.048 0.952 30 H 0.096 0.904 31 H 0.093 0.907 32 H 0.079 0.921 33 H 0.140 0.860 34 H 0.136 0.864 35 H 0.003 0.997 36 H 0.006 0.994 37 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.226 2.782 16.717 20.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C 0.044 3.956 3 H 0.119 0.881 4 C -0.166 4.166 5 C -0.151 4.151 6 C -0.171 4.171 7 C -0.020 4.020 8 N -0.836 5.836 9 S 2.708 3.292 10 O -0.992 6.992 11 O -0.975 6.975 12 C -0.722 4.722 13 C -0.016 4.016 14 C -0.580 4.580 15 H 0.093 0.907 16 C -0.201 4.201 17 N -0.574 5.574 18 Si 0.799 3.201 19 H -0.187 1.187 20 H -0.208 1.208 21 H -0.187 1.187 22 H 0.116 0.884 23 H 0.061 0.939 24 H 0.096 0.904 25 H 0.070 0.930 26 H 0.115 0.885 27 H 0.096 0.904 28 H 0.099 0.901 29 H 0.067 0.933 30 H 0.114 0.886 31 H 0.111 0.889 32 H 0.098 0.902 33 H 0.158 0.842 34 H 0.155 0.845 35 H 0.021 0.979 36 H 0.024 0.976 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 11.822 1.783 16.481 20.361 hybrid contribution -0.590 0.784 -1.091 1.467 sum 11.232 2.567 15.391 19.225 Atomic orbital electron populations 1.22748 0.94461 1.04882 1.02920 1.21318 0.93401 0.96764 0.84143 0.88109 1.21966 0.96852 1.00728 0.97052 1.21496 0.94802 1.01178 0.97615 1.21904 1.02012 0.98684 0.94499 1.21721 0.78569 1.01909 0.99837 1.57763 1.18199 1.74777 1.32823 1.04841 0.73404 0.77111 0.73870 1.93446 1.71094 1.62737 1.71936 1.93570 1.52626 1.81103 1.70185 1.30472 1.09800 1.20352 1.11564 1.18791 0.92764 0.97984 0.92034 1.21481 1.27862 0.94969 1.13721 0.90690 1.26135 0.95426 1.00130 0.98460 1.70100 1.31359 1.27463 1.28505 0.85347 0.78485 0.78442 0.77876 1.18746 1.20843 1.18670 0.88425 0.93930 0.90444 0.93050 0.88504 0.90408 0.90147 0.93314 0.88581 0.88876 0.90229 0.84210 0.84526 0.97911 0.97582 0.92336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.96 7.60 71.98 0.55 -4.41 16 2 C 0.15 3.21 3.51 44.92 0.16 3.37 16 3 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 4 C -0.13 -2.22 5.36 30.67 0.16 -2.05 16 5 C -0.11 -1.61 5.88 30.62 0.18 -1.43 16 6 C -0.13 -2.34 6.08 30.68 0.19 -2.15 16 7 C 0.10 2.32 6.47 86.37 0.56 2.88 16 8 N -1.00 -26.94 3.22 -490.16 -1.58 -28.52 16 9 S 2.61 98.75 4.84 -56.49 -0.27 98.48 16 10 O -1.00 -44.01 16.31 -127.65 -2.08 -46.09 16 11 O -0.98 -41.61 13.59 -127.65 -1.74 -43.34 16 12 C -0.59 -23.42 5.85 71.98 0.42 -23.00 16 13 C 0.02 1.24 4.98 29.85 0.15 1.39 16 14 C -0.54 -30.57 9.11 25.60 0.23 -30.34 16 15 H 0.07 3.90 7.74 -2.91 -0.02 3.87 16 16 C 0.00 -0.18 5.46 84.65 0.46 0.29 16 17 N -0.93 -57.63 13.29 21.45 0.28 -57.35 16 18 Si 0.98 43.55 29.54 68.60 2.03 45.58 16 19 H -0.26 -11.13 7.11 99.48 0.71 -10.43 16 20 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 21 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 22 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 23 H 0.04 1.25 4.85 -2.39 -0.01 1.24 16 24 H 0.08 2.39 6.34 -2.38 -0.02 2.37 16 25 H 0.05 1.09 8.12 -2.39 -0.02 1.07 16 26 H 0.10 1.22 8.14 -2.38 -0.02 1.20 16 27 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.08 0.91 8.14 -2.38 -0.02 0.89 16 29 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.08 2.07 6.60 -2.39 -0.02 2.05 16 33 H 0.14 4.89 6.62 -2.39 -0.02 4.87 16 34 H 0.14 4.83 8.14 -2.39 -0.02 4.81 16 35 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 36 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 37 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 Total: -1.00 -74.32 300.58 0.74 -73.58 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: 1.04 Total: 13.12 kcal Atomic # 6 Polarization: -58.52 SS G_CDS: 3.06 Total: -55.46 kcal Atomic # 7 Polarization: -84.58 SS G_CDS: -1.29 Total: -85.87 kcal Atomic # 8 Polarization: -85.62 SS G_CDS: -3.82 Total: -89.43 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Atomic # 16 Polarization: 98.75 SS G_CDS: -0.27 Total: 98.48 kcal Total: -74.32 0.74 -73.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020180214.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.716 kcal (2) G-P(sol) polarization free energy of solvation -74.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds