Wall clock time and date at job start Mon Mar 30 2020 00:16:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.46733 * 2 1 4 4 C 1.53000 * 109.47233 * 240.00658 * 2 1 3 5 5 C 1.52997 * 109.47060 * 299.99657 * 4 2 1 6 6 C 1.53006 * 109.47127 * 300.00449 * 5 4 2 7 7 C 1.52997 * 109.47164 * 59.99836 * 6 5 4 8 8 C 1.52996 * 109.47346 * 120.00200 * 2 1 3 9 9 H 1.08992 * 109.47554 * 180.02562 * 8 2 1 10 10 C 1.52997 * 109.46975 * 300.00405 * 8 2 1 11 11 N 1.46507 * 109.47321 * 184.99627 * 10 8 2 12 12 S 1.65596 * 120.00278 * 164.99789 * 11 10 8 13 13 O 1.42092 * 106.40301 * 178.54195 * 12 11 10 14 14 O 1.42108 * 106.40304 * 311.46194 * 12 11 10 15 15 C 1.76197 * 107.21754 * 65.00164 * 12 11 10 16 16 H 1.07997 * 120.00150 * 0.02562 * 15 12 11 17 17 C 1.37885 * 120.00175 * 179.97438 * 15 12 11 18 18 N 1.31511 * 119.99336 * 0.02562 * 17 15 12 19 19 Si 1.86798 * 119.99987 * 179.97438 * 17 15 12 20 20 H 1.48504 * 109.47222 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.46915 * 119.99939 * 19 17 15 22 22 H 1.48496 * 109.46917 * 239.99833 * 19 17 15 23 23 H 1.09000 * 109.46986 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.47662 * 299.99768 * 1 2 3 25 25 H 1.09002 * 109.47075 * 60.00274 * 1 2 3 26 26 H 1.09002 * 109.47398 * 59.99826 * 4 2 1 27 27 H 1.09001 * 109.47194 * 180.02562 * 4 2 1 28 28 H 1.08998 * 109.47533 * 59.99948 * 5 4 2 29 29 H 1.08996 * 109.47853 * 180.02562 * 5 4 2 30 30 H 1.09001 * 109.47002 * 299.99574 * 6 5 4 31 31 H 1.09000 * 109.47050 * 179.97438 * 6 5 4 32 32 H 1.09002 * 109.47045 * 180.02562 * 7 6 5 33 33 H 1.09001 * 109.47375 * 59.99966 * 7 6 5 34 34 H 1.08994 * 109.47445 * 304.99750 * 10 8 2 35 35 H 1.09000 * 109.47459 * 65.00057 * 10 8 2 36 36 H 0.97003 * 119.99345 * 345.00549 * 11 10 8 37 37 H 0.97001 * 119.99683 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2493 5 6 1.5301 -2.1636 -1.2494 6 6 2.0401 -2.8849 -0.0002 7 6 1.5301 -2.1638 1.2491 8 6 2.0401 -0.7213 1.2492 9 1 3.1300 -0.7209 1.2494 10 6 1.5300 -0.0001 2.4984 11 7 2.1141 -0.6178 3.6916 12 16 2.0458 0.1672 5.1481 13 8 2.6588 -0.6943 6.0974 14 8 2.4851 1.4972 4.9081 15 6 0.3468 0.2786 5.6014 16 1 -0.4130 -0.1335 4.9539 17 6 -0.0127 0.8909 6.7834 18 7 0.9126 1.3922 7.5720 19 14 -1.8140 1.0096 7.2636 20 1 -2.6493 0.3739 6.2131 21 1 -2.0287 0.3108 8.5562 22 1 -2.1958 2.4378 7.4035 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5137 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.6767 -0.2072 -2.1393 27 1 3.1301 -0.7215 -1.2491 28 1 0.4402 -2.1637 -1.2494 29 1 1.8938 -2.6776 -2.1392 30 1 3.1301 -2.8849 -0.0001 31 1 1.6765 -3.9125 0.0000 32 1 1.8938 -2.6774 2.1391 33 1 0.4400 -2.1638 1.2491 34 1 1.8183 1.0501 2.4549 35 1 0.4437 -0.0771 2.5444 36 1 2.5409 -1.4866 3.6284 37 1 0.6598 1.8227 8.4037 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044510126.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:16:14 Heat of formation + Delta-G solvation = -153.350080 kcal Electronic energy + Delta-G solvation = -18632.387151 eV Core-core repulsion = 15726.412100 eV Total energy + Delta-G solvation = -2905.975051 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 261.119 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.40646 -37.40105 -36.14201 -35.96245 -35.15238 -32.88381 -31.41454 -28.25875 -27.84245 -25.95626 -23.06267 -22.14359 -21.03119 -19.46661 -19.12706 -18.18144 -17.30750 -16.81709 -16.48834 -15.94362 -15.66300 -15.30921 -14.91208 -14.73780 -14.06530 -13.98416 -13.70966 -13.53076 -13.29194 -13.02665 -12.90901 -12.52653 -12.49187 -12.44437 -12.29379 -12.27955 -12.14739 -11.85815 -11.72401 -11.26331 -11.02018 -10.98494 -10.86253 -10.74256 -10.09843 -8.75172 -7.47797 0.38073 1.33540 1.34415 1.52146 2.21286 2.58260 3.02356 3.68963 3.74338 3.84561 3.87910 4.25647 4.36429 4.39095 4.50413 4.53099 4.55592 4.60264 4.74790 4.81966 4.85656 4.90431 5.00328 5.11922 5.19248 5.22335 5.27502 5.30820 5.33885 5.39964 5.49864 5.51523 5.59085 5.75139 5.91026 6.42109 6.78709 8.21653 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.028904 B = 0.005798 C = 0.005374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.506895 B = 4828.217252 C = 5208.968603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.086 4.086 3 H 0.067 0.933 4 C -0.109 4.109 5 C -0.119 4.119 6 C -0.116 4.116 7 C -0.120 4.120 8 C -0.083 4.083 9 H 0.073 0.927 10 C 0.122 3.878 11 N -1.120 6.120 12 S 2.719 3.281 13 O -1.047 7.047 14 O -1.046 7.046 15 C -1.037 5.037 16 H 0.120 0.880 17 C 0.068 3.932 18 N -0.895 5.895 19 Si 0.992 3.008 20 H -0.246 1.246 21 H -0.260 1.260 22 H -0.259 1.259 23 H 0.067 0.933 24 H 0.047 0.953 25 H 0.065 0.935 26 H 0.073 0.927 27 H 0.061 0.939 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.060 0.940 31 H 0.068 0.932 32 H 0.056 0.944 33 H 0.069 0.931 34 H 0.057 0.943 35 H 0.067 0.933 36 H 0.413 0.587 37 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.108 -6.309 -17.536 18.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.106 4.106 3 H 0.086 0.914 4 C -0.146 4.146 5 C -0.156 4.156 6 C -0.153 4.153 7 C -0.158 4.158 8 C -0.103 4.103 9 H 0.091 0.909 10 C -0.004 4.004 11 N -0.881 5.881 12 S 2.820 3.180 13 O -1.038 7.038 14 O -1.036 7.036 15 C -1.171 5.171 16 H 0.139 0.861 17 C -0.145 4.145 18 N -0.527 5.527 19 Si 0.810 3.190 20 H -0.169 1.169 21 H -0.184 1.184 22 H -0.183 1.183 23 H 0.086 0.914 24 H 0.066 0.934 25 H 0.084 0.916 26 H 0.091 0.909 27 H 0.079 0.921 28 H 0.086 0.914 29 H 0.089 0.911 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.075 0.925 33 H 0.088 0.912 34 H 0.075 0.925 35 H 0.085 0.915 36 H 0.247 0.753 37 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.338 -5.710 -16.909 18.000 hybrid contribution -0.789 -0.139 0.675 1.047 sum -3.127 -5.849 -16.234 17.537 Atomic orbital electron populations 1.22029 0.94857 1.02593 1.01836 1.21100 0.96519 0.99061 0.93885 0.91409 1.21529 1.00507 0.95864 0.96736 1.21574 1.01212 0.95253 0.97577 1.21516 1.00711 0.99000 0.94087 1.21665 1.01427 0.94219 0.98472 1.21352 1.00505 0.95724 0.92683 0.90858 1.21445 0.97917 0.96653 0.84419 1.55354 1.74625 1.33685 1.24390 0.99846 0.76347 0.71389 0.70376 1.93303 1.80006 1.68752 1.61694 1.93298 1.84295 1.40468 1.85507 1.30905 1.18958 1.51216 1.15997 0.86145 1.26051 1.06054 0.88951 0.93423 1.70003 1.37615 1.32247 1.12801 0.85080 0.75035 0.79520 0.79379 1.16912 1.18426 1.18333 0.91394 0.93423 0.91636 0.90868 0.92068 0.91404 0.91132 0.92116 0.91309 0.92526 0.91196 0.92477 0.91474 0.75258 0.89138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.10 8.15 71.98 0.59 -2.51 16 2 C -0.09 -1.80 2.72 -10.79 -0.03 -1.83 16 3 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 4 C -0.11 -1.79 5.45 30.59 0.17 -1.62 16 5 C -0.12 -1.80 5.65 30.60 0.17 -1.63 16 6 C -0.12 -2.01 5.92 30.60 0.18 -1.83 16 7 C -0.12 -2.67 4.80 30.59 0.15 -2.52 16 8 C -0.08 -2.08 2.07 -10.80 -0.02 -2.10 16 9 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 10 C 0.12 4.12 5.11 86.38 0.44 4.56 16 11 N -1.12 -44.81 5.88 -187.49 -1.10 -45.91 16 12 S 2.72 148.66 5.02 -56.49 -0.28 148.38 16 13 O -1.05 -63.83 18.02 -128.00 -2.31 -66.14 16 14 O -1.05 -63.71 17.49 -128.00 -2.24 -65.95 16 15 C -1.04 -57.45 9.72 67.74 0.66 -56.79 16 16 H 0.12 5.99 7.81 -2.91 -0.02 5.97 16 17 C 0.07 3.80 5.46 84.66 0.46 4.27 16 18 N -0.90 -54.06 13.19 21.45 0.28 -53.77 16 19 Si 0.99 41.47 29.54 68.60 2.03 43.50 16 20 H -0.25 -9.53 7.11 99.48 0.71 -8.83 16 21 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 22 H -0.26 -10.23 7.11 99.48 0.71 -9.53 16 23 H 0.07 1.25 4.81 -2.39 -0.01 1.24 16 24 H 0.05 1.08 6.54 -2.39 -0.02 1.07 16 25 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.07 1.01 6.43 -2.39 -0.02 0.99 16 29 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.06 1.34 6.90 -2.39 -0.02 1.32 16 33 H 0.07 1.53 6.43 -2.39 -0.02 1.51 16 34 H 0.06 2.10 7.75 -2.39 -0.02 2.09 16 35 H 0.07 2.18 6.71 -2.39 -0.02 2.17 16 36 H 0.41 14.33 7.41 -96.74 -0.72 13.61 16 37 H 0.30 16.12 8.31 -92.71 -0.77 15.35 16 Total: -1.00 -74.68 299.74 -0.51 -75.19 By element: Atomic # 1 Polarization: 26.39 SS G_CDS: 0.35 Total: 26.73 kcal Atomic # 6 Polarization: -64.78 SS G_CDS: 2.76 Total: -62.02 kcal Atomic # 7 Polarization: -98.87 SS G_CDS: -0.82 Total: -99.69 kcal Atomic # 8 Polarization: -127.55 SS G_CDS: -4.54 Total: -132.09 kcal Atomic # 14 Polarization: 41.47 SS G_CDS: 2.03 Total: 43.50 kcal Atomic # 16 Polarization: 148.66 SS G_CDS: -0.28 Total: 148.38 kcal Total: -74.68 -0.51 -75.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044510126.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.160 kcal (2) G-P(sol) polarization free energy of solvation -74.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds