Wall clock time and date at job start Mon Mar 30 2020 00:58:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46505 * 120.00080 * 2 1 4 4 C 1.52997 * 109.47212 * 275.00347 * 3 2 1 5 5 C 1.53785 * 113.61570 * 274.13670 * 4 3 2 6 6 C 1.53956 * 87.02052 * 220.04627 * 5 4 3 7 7 C 1.53777 * 87.11087 * 25.36196 * 6 5 4 8 8 S 1.65596 * 120.00265 * 180.02562 * 2 1 3 9 9 O 1.42101 * 104.27728 * 26.06466 * 8 2 1 10 10 O 1.42101 * 104.28108 * 153.92463 * 8 2 1 11 11 C 1.81403 * 104.45087 * 269.99629 * 8 2 1 12 12 C 1.52992 * 109.47390 * 179.97438 * 11 8 2 13 13 C 1.50699 * 109.47248 * 180.02562 * 12 11 8 14 14 H 1.07998 * 119.99937 * 359.97438 * 13 12 11 15 15 C 1.37878 * 120.00222 * 180.02562 * 13 12 11 16 16 N 1.31519 * 120.00173 * 0.02562 * 15 13 12 17 17 Si 1.86805 * 120.00157 * 179.97438 * 15 13 12 18 18 H 1.48492 * 109.46791 * 60.00176 * 17 15 13 19 19 H 1.48505 * 109.46852 * 180.02562 * 17 15 13 20 20 H 1.48495 * 109.47088 * 299.99691 * 17 15 13 21 21 H 1.08993 * 109.47522 * 90.00073 * 1 2 3 22 22 H 1.08998 * 109.46906 * 210.00311 * 1 2 3 23 23 H 1.09003 * 109.46940 * 329.99268 * 1 2 3 24 24 H 1.09002 * 109.47068 * 35.00407 * 3 2 1 25 25 H 1.09001 * 109.47372 * 155.00495 * 3 2 1 26 26 H 1.09001 * 112.85054 * 45.33091 * 4 3 2 27 27 H 1.09000 * 113.61195 * 334.56762 * 5 4 3 28 28 H 1.09001 * 113.61520 * 105.46896 * 5 4 3 29 29 H 1.09005 * 113.53676 * 270.80967 * 6 5 4 30 30 H 1.08998 * 113.74180 * 139.94369 * 6 5 4 31 31 H 1.09011 * 113.61618 * 220.09268 * 7 6 5 32 32 H 1.09000 * 113.69499 * 89.19666 * 7 6 5 33 33 H 1.09000 * 109.47162 * 299.99966 * 11 8 2 34 34 H 1.09000 * 109.47109 * 59.99791 * 11 8 2 35 35 H 1.09000 * 109.47252 * 300.00292 * 12 11 8 36 36 H 1.09007 * 109.47178 * 59.99755 * 12 11 8 37 37 H 0.96997 * 120.00511 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3435 1.7733 -1.4370 5 6 3.5643 1.1950 -2.1719 6 6 3.7665 2.5979 -2.7728 7 6 3.0272 3.1469 -1.5412 8 16 2.2930 -1.4341 -0.0006 9 8 1.3969 -2.3559 -0.6061 10 8 3.5395 -1.1188 -0.6058 11 6 2.5194 -1.8268 1.7558 12 6 3.2810 -3.1470 1.8892 13 6 3.4685 -3.4736 3.3484 14 1 3.0835 -2.8060 4.1049 15 6 4.1327 -4.6241 3.7175 16 7 4.6029 -5.4364 2.7962 17 14 4.3658 -5.0285 5.5263 18 1 3.0386 -5.1549 6.1802 19 1 5.1060 -6.3095 5.6557 20 1 5.1387 -3.9426 6.1807 21 1 -0.3634 0.0000 -1.0276 22 1 -0.3633 -0.8899 0.5139 23 1 -0.3633 0.8899 0.5140 24 1 1.6501 2.0043 0.5895 25 1 3.1858 1.1177 0.4342 26 1 1.4170 1.7025 -2.0067 27 1 4.3691 0.8855 -1.5051 28 1 3.3096 0.4351 -2.9107 29 1 3.2296 2.7520 -3.7089 30 1 4.8107 2.9053 -2.8282 31 1 2.3394 3.9606 -1.7715 32 1 3.6837 3.3727 -0.7008 33 1 3.0867 -1.0296 2.2362 34 1 1.5453 -1.9196 2.2359 35 1 2.7134 -3.9440 1.4089 36 1 4.2552 -3.0547 1.4090 37 1 5.0698 -6.2460 3.0559 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000111359147.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:42 Heat of formation + Delta-G solvation = -87.010989 kcal Electronic energy + Delta-G solvation = -18351.748046 eV Core-core repulsion = 15448.649674 eV Total energy + Delta-G solvation = -2903.098372 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 261.119 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.89344 -38.11645 -36.95869 -36.54007 -35.89676 -33.12732 -29.75687 -27.62779 -26.69621 -26.18942 -23.76157 -23.25309 -20.25535 -19.80410 -19.00213 -18.18739 -17.36114 -17.12976 -16.55273 -16.34581 -15.76880 -15.71741 -15.03153 -14.55752 -14.33452 -14.10847 -13.73557 -13.53464 -13.24099 -13.11714 -13.01089 -12.91668 -12.89631 -12.79028 -12.55544 -12.23871 -12.17827 -12.02586 -11.74707 -11.57112 -11.19575 -11.09848 -10.97229 -10.64957 -9.81380 -8.26718 -6.41520 -0.66548 1.40179 1.43946 1.52208 1.81276 2.37675 2.90807 3.06317 3.23400 3.58418 3.85368 3.90963 3.97865 4.07066 4.10612 4.18700 4.48399 4.55478 4.72786 4.74435 4.78173 4.93739 4.95859 5.00468 5.03877 5.11507 5.16342 5.24006 5.25823 5.26274 5.49600 5.66885 5.71303 5.75357 6.05224 6.71916 7.28906 8.85369 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.033004 B = 0.004865 C = 0.004733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.186367 B = 5753.528076 C = 5914.483674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.998 5.998 3 C 0.126 3.874 4 C -0.132 4.132 5 C -0.148 4.148 6 C -0.143 4.143 7 C -0.117 4.117 8 S 2.609 3.391 9 O -1.000 7.000 10 O -0.978 6.978 11 C -0.592 4.592 12 C 0.022 3.978 13 C -0.542 4.542 14 H 0.075 0.925 15 C -0.003 4.003 16 N -0.935 5.935 17 Si 0.975 3.025 18 H -0.263 1.263 19 H -0.284 1.284 20 H -0.262 1.262 21 H 0.055 0.945 22 H 0.066 0.934 23 H 0.106 0.894 24 H 0.114 0.886 25 H 0.077 0.923 26 H 0.094 0.906 27 H 0.076 0.924 28 H 0.037 0.963 29 H 0.083 0.917 30 H 0.069 0.931 31 H 0.085 0.915 32 H 0.090 0.910 33 H 0.139 0.861 34 H 0.136 0.864 35 H 0.003 0.997 36 H 0.006 0.994 37 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.231 18.798 -4.757 20.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.837 5.837 3 C 0.001 3.999 4 C -0.152 4.152 5 C -0.186 4.186 6 C -0.180 4.180 7 C -0.155 4.155 8 S 2.706 3.294 9 O -0.991 6.991 10 O -0.968 6.968 11 C -0.723 4.723 12 C -0.017 4.017 13 C -0.581 4.581 14 H 0.093 0.907 15 C -0.202 4.202 16 N -0.574 5.574 17 Si 0.798 3.202 18 H -0.187 1.187 19 H -0.209 1.209 20 H -0.187 1.187 21 H 0.074 0.926 22 H 0.085 0.915 23 H 0.125 0.875 24 H 0.132 0.868 25 H 0.095 0.905 26 H 0.112 0.888 27 H 0.095 0.905 28 H 0.056 0.944 29 H 0.102 0.898 30 H 0.088 0.912 31 H 0.104 0.896 32 H 0.109 0.891 33 H 0.158 0.842 34 H 0.154 0.846 35 H 0.021 0.979 36 H 0.025 0.975 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -6.908 18.189 -5.576 20.240 hybrid contribution 0.289 -0.871 1.083 1.420 sum -6.619 17.318 -4.494 19.076 Atomic orbital electron populations 1.21683 0.77078 1.04379 1.02672 1.57334 1.15825 1.20593 1.89942 1.21629 0.96780 0.84454 0.97015 1.23044 0.98082 0.97521 0.96560 1.23076 0.99162 0.96475 0.99878 1.22892 1.01155 0.95576 0.98380 1.22815 0.99195 0.95310 0.98224 1.04888 0.73285 0.73147 0.78099 1.93481 1.65762 1.64377 1.75455 1.93513 1.45354 1.83126 1.74849 1.30415 1.10422 1.07714 1.23736 1.18796 0.94130 0.89875 0.98907 1.21497 1.37012 1.07496 0.92062 0.90672 1.26137 0.94812 0.95948 1.03284 1.70100 1.38285 1.13356 1.35698 0.85352 0.78891 0.77690 0.78256 1.18723 1.20892 1.18686 0.92622 0.91533 0.87524 0.86825 0.90499 0.88811 0.90509 0.94392 0.89824 0.91205 0.89604 0.89142 0.84242 0.84555 0.97903 0.97544 0.92356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.70 10.24 127.77 1.31 3.01 16 2 N -1.00 -25.23 3.12 -539.14 -1.68 -26.91 16 3 C 0.13 2.57 5.21 86.38 0.45 3.02 16 4 C -0.13 -2.72 3.96 -10.27 -0.04 -2.76 16 5 C -0.15 -3.93 6.12 31.18 0.19 -3.74 16 6 C -0.14 -2.72 8.09 31.18 0.25 -2.46 16 7 C -0.12 -1.83 7.65 31.12 0.24 -1.59 16 8 S 2.61 95.47 5.32 -56.49 -0.30 95.17 16 9 O -1.00 -43.29 17.09 -127.65 -2.18 -45.47 16 10 O -0.98 -40.07 14.38 -127.65 -1.84 -41.90 16 11 C -0.59 -22.86 6.12 71.98 0.44 -22.42 16 12 C 0.02 1.16 4.98 29.84 0.15 1.31 16 13 C -0.54 -30.42 9.11 25.60 0.23 -30.18 16 14 H 0.08 3.88 7.74 -2.91 -0.02 3.86 16 15 C 0.00 -0.19 5.46 84.65 0.46 0.27 16 16 N -0.93 -57.49 13.29 21.45 0.28 -57.21 16 17 Si 0.97 43.40 29.54 68.60 2.03 45.43 16 18 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 19 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 20 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 21 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 22 H 0.07 1.38 7.79 -2.39 -0.02 1.36 16 23 H 0.11 1.28 7.94 -2.39 -0.02 1.26 16 24 H 0.11 1.49 7.96 -2.39 -0.02 1.47 16 25 H 0.08 1.68 7.34 -2.39 -0.02 1.66 16 26 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 27 H 0.08 2.36 6.94 -2.39 -0.02 2.34 16 28 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 30 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.09 1.01 8.14 -2.38 -0.02 0.99 16 32 H 0.09 1.28 8.10 -2.39 -0.02 1.26 16 33 H 0.14 4.70 8.14 -2.39 -0.02 4.68 16 34 H 0.14 4.66 8.14 -2.39 -0.02 4.64 16 35 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 36 H 0.01 0.36 8.14 -2.38 -0.02 0.34 16 37 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 Total: -1.00 -74.64 314.52 1.02 -73.62 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: 1.02 Total: 12.84 kcal Atomic # 6 Polarization: -59.24 SS G_CDS: 3.68 Total: -55.56 kcal Atomic # 7 Polarization: -82.72 SS G_CDS: -1.39 Total: -84.12 kcal Atomic # 8 Polarization: -83.36 SS G_CDS: -4.02 Total: -87.37 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Atomic # 16 Polarization: 95.47 SS G_CDS: -0.30 Total: 95.17 kcal Total: -74.64 1.02 -73.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111359147.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.393 kcal (2) G-P(sol) polarization free energy of solvation -74.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds