Wall clock time and date at job start Mon Mar 30 2020 00:59:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46500 * 119.99768 * 2 1 4 4 C 1.53006 * 109.46998 * 275.00333 * 3 2 1 5 5 C 1.52999 * 109.46626 * 179.97438 * 4 3 2 6 6 C 1.52994 * 117.49977 * 243.74412 * 5 4 3 7 7 C 1.53000 * 117.49529 * 175.08553 * 5 4 3 8 8 S 1.65594 * 120.00146 * 180.02562 * 2 1 3 9 9 O 1.42102 * 104.28206 * 26.06389 * 8 2 1 10 10 O 1.42101 * 104.27941 * 153.92473 * 8 2 1 11 11 C 1.81404 * 104.44789 * 269.99546 * 8 2 1 12 12 C 1.52999 * 109.47370 * 180.02562 * 11 8 2 13 13 C 1.50698 * 109.47323 * 179.97438 * 12 11 8 14 14 H 1.07997 * 119.99676 * 0.02562 * 13 12 11 15 15 C 1.37879 * 119.99959 * 180.02562 * 13 12 11 16 16 N 1.31507 * 120.00149 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 119.99826 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47212 * 59.99550 * 17 15 13 19 19 H 1.48500 * 109.47256 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47036 * 299.99900 * 17 15 13 21 21 H 1.09000 * 109.47298 * 90.00028 * 1 2 3 22 22 H 1.09005 * 109.46612 * 209.99569 * 1 2 3 23 23 H 1.09000 * 109.47360 * 329.99153 * 1 2 3 24 24 H 1.09000 * 109.47175 * 155.00464 * 3 2 1 25 25 H 1.09001 * 109.47297 * 34.99971 * 3 2 1 26 26 H 1.08993 * 109.46955 * 300.00226 * 4 3 2 27 27 H 1.09000 * 109.47050 * 60.00054 * 4 3 2 28 28 H 1.09000 * 115.55307 * 29.42251 * 5 4 3 29 29 H 1.09004 * 117.50018 * 0.02562 * 6 5 4 30 30 H 1.09002 * 117.49941 * 145.02738 * 6 5 4 31 31 H 1.09009 * 117.50302 * 214.98077 * 7 5 4 32 32 H 1.08997 * 117.50228 * 0.02562 * 7 5 4 33 33 H 1.09002 * 109.46685 * 299.99881 * 11 8 2 34 34 H 1.09000 * 109.47157 * 59.99548 * 11 8 2 35 35 H 1.08993 * 109.47353 * 300.00385 * 12 11 8 36 36 H 1.09004 * 109.47053 * 60.00079 * 12 11 8 37 37 H 0.97001 * 120.00104 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3435 1.7733 -1.4371 5 6 3.1079 3.0987 -1.4369 6 6 2.3653 4.3426 -1.9289 7 6 3.4592 3.7117 -2.7940 8 16 2.2930 -1.4341 -0.0006 9 8 1.3970 -2.3559 -0.6061 10 8 3.5395 -1.1188 -0.6058 11 6 2.5195 -1.8267 1.7559 12 6 3.2821 -3.1464 1.8893 13 6 3.4708 -3.4722 3.3485 14 1 3.0849 -2.8051 4.1050 15 6 4.1360 -4.6221 3.7176 16 7 4.6054 -5.4348 2.7964 17 14 4.3692 -5.0264 5.5264 18 1 3.0420 -5.1540 6.1802 19 1 5.1106 -6.3066 5.6559 20 1 5.1409 -3.9396 6.1810 21 1 -0.3634 0.0000 -1.0277 22 1 -0.3633 -0.8901 0.5138 23 1 -0.3634 0.8899 0.5140 24 1 3.1858 1.1178 0.4342 25 1 1.6501 2.0043 0.5894 26 1 2.8908 1.0378 -2.0265 27 1 1.3552 1.9243 -1.8713 28 1 3.8242 3.2282 -0.6256 29 1 1.3320 4.2168 -2.2524 30 1 2.5933 5.2905 -1.4416 31 1 4.4065 4.2448 -2.8755 32 1 3.1454 3.1710 -3.6869 33 1 3.0868 -1.0295 2.2361 34 1 1.5453 -1.9195 2.2360 35 1 2.7153 -3.9438 1.4089 36 1 4.2564 -3.0531 1.4093 37 1 5.0738 -6.2436 3.0561 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000119157586.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:09 Heat of formation + Delta-G solvation = -62.742905 kcal Electronic energy + Delta-G solvation = -17894.563278 eV Core-core repulsion = 14992.517249 eV Total energy + Delta-G solvation = -2902.046029 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 261.119 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -38.05731 -36.60554 -36.04774 -35.35229 -33.88069 -31.15407 -30.51037 -26.28509 -25.54768 -23.19071 -22.48775 -21.49950 -20.54443 -18.42962 -17.46880 -16.50012 -16.08353 -15.93025 -15.30384 -14.71894 -14.57109 -14.25314 -13.83142 -13.63975 -13.31839 -12.60147 -12.48937 -12.29851 -11.85067 -11.75038 -11.69156 -11.55401 -11.47834 -11.16400 -11.06301 -11.02659 -10.96026 -10.46244 -10.42231 -10.36821 -9.98425 -9.75068 -9.33248 -8.75698 -8.49850 -6.11969 -4.17747 0.77775 3.04854 3.27340 3.32124 3.33980 3.66089 4.30907 4.39328 4.49538 4.66328 4.71938 4.78099 4.82606 5.19973 5.22976 5.25939 5.42048 5.46876 5.51949 5.56633 5.65340 5.66583 5.76189 5.78324 5.82497 5.94446 6.00941 6.20324 6.27968 6.49918 6.70026 7.30438 7.36686 7.80701 8.18059 8.85425 9.46922 10.99032 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.032963 B = 0.004326 C = 0.004187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.235719 B = 6471.385167 C = 6685.027909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -1.012 6.012 3 C 0.130 3.870 4 C -0.110 4.110 5 C -0.147 4.147 6 C -0.183 4.183 7 C -0.181 4.181 8 S 2.589 3.411 9 O -0.965 6.965 10 O -0.961 6.961 11 C -0.590 4.590 12 C 0.028 3.972 13 C -0.521 4.521 14 H 0.061 0.939 15 C 0.058 3.942 16 N -0.891 5.891 17 Si 0.900 3.100 18 H -0.275 1.275 19 H -0.285 1.285 20 H -0.275 1.275 21 H 0.052 0.948 22 H 0.071 0.929 23 H 0.067 0.933 24 H 0.082 0.918 25 H 0.076 0.924 26 H 0.078 0.922 27 H 0.065 0.935 28 H 0.107 0.893 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.118 0.882 34 H 0.118 0.882 35 H 0.033 0.967 36 H 0.033 0.967 37 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.660 17.137 -6.139 19.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.848 5.848 3 C 0.004 3.996 4 C -0.150 4.150 5 C -0.166 4.166 6 C -0.220 4.220 7 C -0.218 4.218 8 S 2.687 3.313 9 O -0.955 6.955 10 O -0.952 6.952 11 C -0.723 4.723 12 C -0.011 4.011 13 C -0.561 4.561 14 H 0.079 0.921 15 C -0.145 4.145 16 N -0.529 5.529 17 Si 0.728 3.272 18 H -0.201 1.201 19 H -0.211 1.211 20 H -0.201 1.201 21 H 0.071 0.929 22 H 0.090 0.910 23 H 0.086 0.914 24 H 0.101 0.899 25 H 0.094 0.906 26 H 0.096 0.904 27 H 0.084 0.916 28 H 0.125 0.875 29 H 0.110 0.890 30 H 0.110 0.890 31 H 0.111 0.889 32 H 0.112 0.888 33 H 0.137 0.863 34 H 0.136 0.864 35 H 0.051 0.949 36 H 0.052 0.948 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.337 16.524 -6.975 19.023 hybrid contribution 0.034 -0.036 1.617 1.618 sum -6.303 16.488 -5.358 18.447 Atomic orbital electron populations 1.21389 0.78930 1.02688 1.01842 1.57739 1.14891 1.21685 1.90475 1.21223 0.96667 0.85013 0.96703 1.21639 0.99907 0.95292 0.98113 1.22252 1.02533 0.93554 0.98282 1.23051 0.97346 0.97103 1.04524 1.22963 0.99773 1.04219 0.94885 1.05806 0.73652 0.72545 0.79279 1.93536 1.64849 1.62048 1.75060 1.93539 1.43872 1.82765 1.74983 1.30490 1.10151 1.10614 1.21088 1.18959 0.94972 0.87208 0.99966 1.20971 1.37172 1.07125 0.90819 0.92110 1.25068 0.95293 0.96076 0.98024 1.69943 1.37171 1.12723 1.33014 0.86525 0.78380 0.77751 0.84584 1.20076 1.21055 1.20078 0.92886 0.91029 0.91424 0.89946 0.90605 0.90383 0.91638 0.87477 0.88959 0.89048 0.88871 0.88848 0.86328 0.86355 0.94885 0.94837 0.92460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.08 10.24 59.85 0.61 1.69 16 2 N -1.01 -13.76 3.12 -121.75 -0.38 -14.14 16 3 C 0.13 1.51 5.24 -4.04 -0.02 1.49 16 4 C -0.11 -1.27 5.82 -26.73 -0.16 -1.42 16 5 C -0.15 -1.45 5.73 -90.62 -0.52 -1.97 16 6 C -0.18 -1.52 10.18 -26.70 -0.27 -1.79 16 7 C -0.18 -1.65 10.25 -26.69 -0.27 -1.92 16 8 S 2.59 47.33 5.32 -107.50 -0.57 46.76 16 9 O -0.96 -20.30 17.09 -57.54 -0.98 -21.29 16 10 O -0.96 -19.88 16.75 -57.54 -0.96 -20.85 16 11 C -0.59 -11.43 6.12 37.16 0.23 -11.20 16 12 C 0.03 0.72 4.98 -27.88 -0.14 0.58 16 13 C -0.52 -14.50 9.11 -34.44 -0.31 -14.82 16 14 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 15 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 16 N -0.89 -26.59 13.29 55.43 0.74 -25.86 16 17 Si 0.90 21.23 29.54 -169.99 -5.02 16.21 16 18 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 19 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 21 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 22 H 0.07 0.80 7.79 -51.93 -0.40 0.39 16 23 H 0.07 0.56 7.94 -51.93 -0.41 0.14 16 24 H 0.08 0.98 7.61 -51.93 -0.40 0.59 16 25 H 0.08 0.69 7.96 -51.93 -0.41 0.27 16 26 H 0.08 1.07 7.90 -51.93 -0.41 0.66 16 27 H 0.06 0.69 7.87 -51.93 -0.41 0.28 16 28 H 0.11 1.00 8.08 -51.93 -0.42 0.58 16 29 H 0.09 0.73 8.03 -51.93 -0.42 0.31 16 30 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.09 0.77 8.14 -51.92 -0.42 0.34 16 32 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.12 2.06 8.14 -51.92 -0.42 1.64 16 34 H 0.12 2.06 8.14 -51.92 -0.42 1.64 16 35 H 0.03 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 323.91 15.07 4.88 4.88 Total: -1.00 -33.85 323.91 -9.46 -43.31 By element: Atomic # 1 Polarization: 5.00 SS G_CDS: -6.20 Total: -1.21 kcal Atomic # 6 Polarization: -26.87 SS G_CDS: -0.95 Total: -27.82 kcal Atomic # 7 Polarization: -40.36 SS G_CDS: 0.36 Total: -40.00 kcal Atomic # 8 Polarization: -40.19 SS G_CDS: -1.95 Total: -42.13 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: 47.33 SS G_CDS: -0.57 Total: 46.76 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -33.85 -9.46 -43.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119157586.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.436 kcal (2) G-P(sol) polarization free energy of solvation -33.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds