Wall clock time and date at job start Mon Mar 30 2020 00:30:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.32594 * 2 1 4 4 C 1.53176 * 109.40530 * 240.21337 * 2 1 3 5 5 H 1.09003 * 109.73563 * 297.07234 * 4 2 1 6 6 C 1.53004 * 109.60296 * 57.47595 * 4 2 1 7 7 S 1.81817 * 108.67789 * 177.23530 * 4 2 1 8 8 O 1.42097 * 108.70328 * 298.05905 * 7 4 2 9 9 O 1.42108 * 108.82341 * 166.61979 * 7 4 2 10 10 C 1.81809 * 101.02223 * 52.31890 * 7 4 2 11 11 C 1.53181 * 108.67619 * 307.68337 * 10 7 4 12 12 N 1.46475 * 109.90420 * 62.63653 * 11 10 7 13 13 C 1.46893 * 110.99978 * 162.99944 * 12 11 10 14 14 C 1.53004 * 109.47285 * 66.05188 * 13 12 11 15 15 C 1.50701 * 109.47211 * 179.97438 * 14 13 12 16 16 H 1.08002 * 119.99761 * 359.97438 * 15 14 13 17 17 C 1.37871 * 119.99694 * 180.27574 * 15 14 13 18 18 N 1.31514 * 120.00482 * 359.71466 * 17 15 14 19 19 Si 1.86801 * 119.99746 * 179.72062 * 17 15 14 20 20 H 1.48504 * 109.47209 * 89.99886 * 19 17 15 21 21 H 1.48501 * 109.47358 * 209.99377 * 19 17 15 22 22 H 1.48496 * 109.47341 * 329.99989 * 19 17 15 23 23 H 1.08996 * 109.47650 * 300.22488 * 1 2 3 24 24 H 1.09006 * 109.46602 * 60.22503 * 1 2 3 25 25 H 1.09000 * 109.47296 * 180.21746 * 1 2 3 26 26 H 1.08990 * 109.47148 * 179.19309 * 6 4 2 27 27 H 1.09001 * 109.46719 * 299.19165 * 6 4 2 28 28 H 1.08998 * 109.46564 * 59.18960 * 6 4 2 29 29 H 1.08997 * 109.60281 * 187.92809 * 10 7 4 30 30 H 1.09001 * 109.74011 * 67.51792 * 10 7 4 31 31 H 1.09001 * 109.40014 * 302.50400 * 11 10 7 32 32 H 1.09001 * 109.33052 * 182.72505 * 11 10 7 33 33 H 1.09000 * 109.47823 * 306.04550 * 13 12 11 34 34 H 1.09007 * 109.47029 * 186.04318 * 13 12 11 35 35 H 1.09000 * 109.47211 * 59.98987 * 14 13 12 36 36 H 1.09007 * 109.46376 * 299.99529 * 14 13 12 37 37 H 0.96995 * 120.00207 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8907 1.0286 0.0000 4 6 2.0389 -0.7177 -1.2539 5 1 1.7208 -1.7601 -1.2360 6 6 1.4786 -0.0314 -2.5013 7 16 3.8551 -0.6345 -1.2757 8 8 4.2479 0.7295 -1.3425 9 8 4.3443 -1.5483 -2.2478 10 6 4.2523 -1.2752 0.3787 11 6 3.4507 -0.4838 1.4168 12 7 2.0164 -0.6861 1.1993 13 6 1.2432 -0.2887 2.3833 14 6 1.3701 1.2217 2.5920 15 6 0.5763 1.6295 3.8064 16 1 0.0351 0.8857 4.3725 17 6 0.5360 2.9528 4.1911 18 7 1.1948 3.8585 3.5017 19 14 -0.4542 3.4594 5.6919 20 1 0.4077 3.3924 6.8993 21 1 -0.9485 4.8483 5.5131 22 1 -1.6089 2.5403 5.8564 23 1 -0.3634 0.5173 0.8879 24 1 -0.3633 0.5104 -0.8921 25 1 -0.3634 -1.0276 0.0039 26 1 1.8534 -0.5348 -3.3923 27 1 0.3899 -0.0826 -2.4859 28 1 1.7932 1.0121 -2.5140 29 1 5.3184 -1.1553 0.5710 30 1 3.9863 -2.3306 0.4384 31 1 3.6850 0.5766 1.3235 32 1 3.7171 -0.8268 2.4165 33 1 1.6273 -0.8102 3.2600 34 1 0.1947 -0.5483 2.2365 35 1 0.9860 1.7432 1.7153 36 1 2.4185 1.4813 2.7388 37 1 1.1661 4.7895 3.7721 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127456487.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:30:07 Heat of formation + Delta-G solvation = -70.099992 kcal Electronic energy + Delta-G solvation = -19029.893374 eV Core-core repulsion = 16127.528318 eV Total energy + Delta-G solvation = -2902.365057 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 261.119 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.04853 -36.83945 -35.93832 -34.40452 -33.26631 -31.68743 -29.13952 -28.03482 -25.42231 -24.04355 -22.49780 -21.49526 -19.36015 -18.56665 -16.80485 -16.55987 -16.38697 -15.93555 -15.50439 -14.79368 -14.57460 -13.86544 -13.56551 -13.45062 -13.04713 -12.64356 -12.47268 -12.15682 -12.02247 -11.97165 -11.88352 -11.66905 -11.60218 -11.43006 -11.07987 -10.96253 -10.85629 -10.72091 -10.31986 -10.00877 -9.85973 -9.82309 -9.23314 -8.43900 -7.85132 -6.08726 -4.12905 0.11973 2.74727 3.26071 3.33248 3.35478 3.68833 3.85499 4.25007 4.39066 4.51680 4.72392 4.80877 5.09244 5.12541 5.26884 5.29265 5.41687 5.52566 5.68072 5.79771 5.85498 5.91197 5.99343 6.06172 6.15150 6.29092 6.49660 6.55142 6.74263 7.21574 7.26381 7.55098 7.66022 7.89373 8.30007 8.93994 9.52285 11.02035 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.034287 B = 0.005575 C = 0.005414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.446572 B = 5021.518788 C = 5170.668181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.097 3.903 3 H 0.070 0.930 4 C -0.548 4.548 5 H 0.141 0.859 6 C -0.142 4.142 7 S 2.403 3.597 8 O -0.936 6.936 9 O -0.953 6.953 10 C -0.593 4.593 11 C 0.064 3.936 12 N -0.554 5.554 13 C 0.058 3.942 14 C -0.015 4.015 15 C -0.523 4.523 16 H 0.056 0.944 17 C 0.059 3.941 18 N -0.892 5.892 19 Si 0.892 3.108 20 H -0.281 1.281 21 H -0.286 1.286 22 H -0.274 1.274 23 H 0.084 0.916 24 H 0.060 0.940 25 H 0.059 0.941 26 H 0.067 0.933 27 H 0.085 0.915 28 H 0.074 0.926 29 H 0.132 0.868 30 H 0.137 0.863 31 H 0.063 0.937 32 H 0.097 0.903 33 H 0.066 0.934 34 H 0.075 0.925 35 H 0.024 0.976 36 H 0.018 0.982 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.796 -10.059 -8.323 13.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.013 4.013 3 H 0.088 0.912 4 C -0.660 4.660 5 H 0.159 0.841 6 C -0.200 4.200 7 S 2.588 3.412 8 O -0.933 6.933 9 O -0.950 6.950 10 C -0.724 4.724 11 C -0.066 4.066 12 N -0.279 5.279 13 C -0.068 4.068 14 C -0.053 4.053 15 C -0.562 4.562 16 H 0.075 0.925 17 C -0.143 4.143 18 N -0.530 5.530 19 Si 0.720 3.280 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.198 1.198 23 H 0.103 0.897 24 H 0.079 0.921 25 H 0.078 0.922 26 H 0.086 0.914 27 H 0.104 0.896 28 H 0.093 0.907 29 H 0.150 0.850 30 H 0.155 0.845 31 H 0.081 0.919 32 H 0.115 0.885 33 H 0.085 0.915 34 H 0.094 0.906 35 H 0.043 0.957 36 H 0.036 0.964 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.366 -10.077 -9.093 13.778 hybrid contribution -0.772 0.843 1.634 1.995 sum 1.594 -9.234 -7.459 11.977 Atomic orbital electron populations 1.22042 0.92761 1.02385 1.03457 1.21265 0.97987 0.95604 0.86437 0.91187 1.30031 1.23418 1.09487 1.03029 0.84071 1.21666 1.03782 1.01057 0.93529 1.08486 0.79014 0.75830 0.77894 1.93592 1.80649 1.32917 1.86186 1.93552 1.78450 1.65739 1.57232 1.30200 1.09258 1.12179 1.20732 1.21712 0.87574 0.98431 0.98843 1.61683 1.02660 1.58717 1.04821 1.22452 0.97152 0.98365 0.88818 1.19770 0.97713 0.90049 0.97740 1.21092 1.30547 0.93005 1.11546 0.92538 1.25018 0.95602 0.96786 0.96874 1.69958 1.41930 1.01718 1.39422 0.86597 0.80403 0.77862 0.83141 1.20665 1.21226 1.19843 0.89707 0.92130 0.92151 0.91389 0.89593 0.90690 0.84989 0.84459 0.91855 0.88495 0.91519 0.90641 0.95749 0.96388 0.92867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 7.70 37.16 0.29 -1.84 16 2 C 0.10 1.46 1.30 -67.85 -0.09 1.37 16 3 H 0.07 1.23 7.07 -51.93 -0.37 0.86 16 4 C -0.55 -6.79 2.79 -26.64 -0.07 -6.86 16 5 H 0.14 1.45 8.14 -51.93 -0.42 1.03 16 6 C -0.14 -1.58 8.75 37.16 0.33 -1.26 16 7 S 2.40 32.91 4.73 -107.50 -0.51 32.40 16 8 O -0.94 -16.24 18.06 -57.81 -1.04 -17.28 16 9 O -0.95 -14.92 18.11 -57.81 -1.05 -15.96 16 10 C -0.59 -6.98 6.58 37.25 0.24 -6.74 16 11 C 0.06 0.94 4.68 -3.96 -0.02 0.93 16 12 N -0.55 -8.66 4.52 -227.12 -1.03 -9.68 16 13 C 0.06 1.07 4.67 -3.83 -0.02 1.05 16 14 C -0.01 -0.35 4.02 -27.88 -0.11 -0.46 16 15 C -0.52 -13.90 9.11 -34.44 -0.31 -14.21 16 16 H 0.06 1.45 7.74 -52.49 -0.41 1.05 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 18 N -0.89 -25.98 13.29 55.43 0.74 -25.25 16 19 Si 0.89 20.94 29.54 -169.99 -5.02 15.92 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 23 H 0.08 1.44 5.26 -51.93 -0.27 1.16 16 24 H 0.06 0.76 6.38 -51.93 -0.33 0.43 16 25 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.09 0.83 6.43 -51.93 -0.33 0.50 16 28 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.13 1.30 8.14 -51.93 -0.42 0.87 16 30 H 0.14 1.34 8.14 -51.93 -0.42 0.91 16 31 H 0.06 1.07 7.14 -51.93 -0.37 0.70 16 32 H 0.10 1.37 7.83 -51.93 -0.41 0.96 16 33 H 0.07 1.21 7.94 -51.93 -0.41 0.80 16 34 H 0.08 1.35 6.23 -51.93 -0.32 1.03 16 35 H 0.02 0.61 5.86 -51.93 -0.30 0.30 16 36 H 0.02 0.46 6.95 -51.93 -0.36 0.10 16 37 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 296.61 15.07 4.47 4.47 Total: -1.00 -32.65 296.61 -8.87 -41.52 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -5.56 Total: 0.35 kcal Atomic # 6 Polarization: -26.62 SS G_CDS: 0.13 Total: -26.49 kcal Atomic # 7 Polarization: -34.64 SS G_CDS: -0.29 Total: -34.93 kcal Atomic # 8 Polarization: -31.16 SS G_CDS: -2.09 Total: -33.25 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Atomic # 16 Polarization: 32.91 SS G_CDS: -0.51 Total: 32.40 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -32.65 -8.87 -41.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127456487.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.583 kcal (2) G-P(sol) polarization free energy of solvation -32.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds