Wall clock time and date at job start Mon Mar 30 2020 00:30:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.32594 * 2 1 4 4 C 1.53176 * 109.40530 * 240.21337 * 2 1 3 5 5 H 1.09003 * 109.73563 * 297.07234 * 4 2 1 6 6 C 1.53004 * 109.60296 * 57.47595 * 4 2 1 7 7 S 1.81817 * 108.67789 * 177.23530 * 4 2 1 8 8 O 1.42097 * 108.70328 * 298.05905 * 7 4 2 9 9 O 1.42108 * 108.82341 * 166.61979 * 7 4 2 10 10 C 1.81809 * 101.02223 * 52.31890 * 7 4 2 11 11 C 1.53181 * 108.67619 * 307.68337 * 10 7 4 12 12 N 1.46475 * 109.90420 * 62.63653 * 11 10 7 13 13 C 1.46893 * 110.99978 * 162.99944 * 12 11 10 14 14 C 1.53004 * 109.47285 * 66.05188 * 13 12 11 15 15 C 1.50701 * 109.47211 * 179.97438 * 14 13 12 16 16 H 1.08002 * 119.99761 * 359.97438 * 15 14 13 17 17 C 1.37871 * 119.99694 * 180.27574 * 15 14 13 18 18 N 1.31514 * 120.00482 * 359.71466 * 17 15 14 19 19 Si 1.86801 * 119.99746 * 179.72062 * 17 15 14 20 20 H 1.48504 * 109.47209 * 89.99886 * 19 17 15 21 21 H 1.48501 * 109.47358 * 209.99377 * 19 17 15 22 22 H 1.48496 * 109.47341 * 329.99989 * 19 17 15 23 23 H 1.08996 * 109.47650 * 300.22488 * 1 2 3 24 24 H 1.09006 * 109.46602 * 60.22503 * 1 2 3 25 25 H 1.09000 * 109.47296 * 180.21746 * 1 2 3 26 26 H 1.08990 * 109.47148 * 179.19309 * 6 4 2 27 27 H 1.09001 * 109.46719 * 299.19165 * 6 4 2 28 28 H 1.08998 * 109.46564 * 59.18960 * 6 4 2 29 29 H 1.08997 * 109.60281 * 187.92809 * 10 7 4 30 30 H 1.09001 * 109.74011 * 67.51792 * 10 7 4 31 31 H 1.09001 * 109.40014 * 302.50400 * 11 10 7 32 32 H 1.09001 * 109.33052 * 182.72505 * 11 10 7 33 33 H 1.09000 * 109.47823 * 306.04550 * 13 12 11 34 34 H 1.09007 * 109.47029 * 186.04318 * 13 12 11 35 35 H 1.09000 * 109.47211 * 59.98987 * 14 13 12 36 36 H 1.09007 * 109.46376 * 299.99529 * 14 13 12 37 37 H 0.96995 * 120.00207 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8907 1.0286 0.0000 4 6 2.0389 -0.7177 -1.2539 5 1 1.7208 -1.7601 -1.2360 6 6 1.4786 -0.0314 -2.5013 7 16 3.8551 -0.6345 -1.2757 8 8 4.2479 0.7295 -1.3425 9 8 4.3443 -1.5483 -2.2478 10 6 4.2523 -1.2752 0.3787 11 6 3.4507 -0.4838 1.4168 12 7 2.0164 -0.6861 1.1993 13 6 1.2432 -0.2887 2.3833 14 6 1.3701 1.2217 2.5920 15 6 0.5763 1.6295 3.8064 16 1 0.0351 0.8857 4.3725 17 6 0.5360 2.9528 4.1911 18 7 1.1948 3.8585 3.5017 19 14 -0.4542 3.4594 5.6919 20 1 0.4077 3.3924 6.8993 21 1 -0.9485 4.8483 5.5131 22 1 -1.6089 2.5403 5.8564 23 1 -0.3634 0.5173 0.8879 24 1 -0.3633 0.5104 -0.8921 25 1 -0.3634 -1.0276 0.0039 26 1 1.8534 -0.5348 -3.3923 27 1 0.3899 -0.0826 -2.4859 28 1 1.7932 1.0121 -2.5140 29 1 5.3184 -1.1553 0.5710 30 1 3.9863 -2.3306 0.4384 31 1 3.6850 0.5766 1.3235 32 1 3.7171 -0.8268 2.4165 33 1 1.6273 -0.8102 3.2600 34 1 0.1947 -0.5483 2.2365 35 1 0.9860 1.7432 1.7153 36 1 2.4185 1.4813 2.7388 37 1 1.1661 4.7895 3.7721 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127456487.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:30:06 Heat of formation + Delta-G solvation = -95.211901 kcal Electronic energy + Delta-G solvation = -19030.982308 eV Core-core repulsion = 16127.528318 eV Total energy + Delta-G solvation = -2903.453991 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 261.119 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.33893 -38.04018 -37.13605 -35.73236 -34.96651 -33.16784 -30.59026 -29.35841 -26.84151 -25.48709 -23.97279 -22.80543 -20.69529 -19.74259 -18.57449 -17.92693 -17.53926 -17.13162 -16.74403 -16.45791 -16.16506 -15.19291 -14.87825 -14.53770 -14.29890 -14.12067 -13.69574 -13.47824 -13.41817 -13.18860 -13.11457 -13.04175 -12.94428 -12.70235 -12.64833 -12.53816 -12.25024 -12.07139 -11.82003 -11.62614 -11.46248 -11.18041 -10.88937 -10.54032 -9.30090 -8.19026 -6.30507 -0.96249 1.40944 1.41227 1.52200 1.68831 2.40273 2.61588 2.66017 3.08284 3.14675 3.42422 3.66578 3.81171 3.99296 4.11725 4.16987 4.41715 4.44070 4.56331 4.66332 4.74766 4.77518 4.80217 4.86438 4.94626 5.06638 5.12026 5.19322 5.32009 5.54721 5.58759 5.72269 5.94279 6.09345 6.29336 6.88366 7.39368 8.91787 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.034287 B = 0.005575 C = 0.005414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.446572 B = 5021.518788 C = 5170.668181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.092 3.908 3 H 0.034 0.966 4 C -0.533 4.533 5 H 0.175 0.825 6 C -0.150 4.150 7 S 2.402 3.598 8 O -0.984 6.984 9 O -0.971 6.971 10 C -0.575 4.575 11 C 0.056 3.944 12 N -0.537 5.537 13 C 0.071 3.929 14 C -0.007 4.007 15 C -0.535 4.535 16 H 0.066 0.934 17 C 0.001 3.999 18 N -0.934 5.934 19 Si 0.961 3.039 20 H -0.275 1.275 21 H -0.288 1.288 22 H -0.260 1.260 23 H 0.053 0.947 24 H 0.076 0.924 25 H 0.084 0.916 26 H 0.085 0.915 27 H 0.105 0.895 28 H 0.059 0.941 29 H 0.155 0.845 30 H 0.171 0.829 31 H 0.032 0.968 32 H 0.107 0.893 33 H 0.074 0.926 34 H 0.086 0.914 35 H 0.002 0.998 36 H -0.012 1.012 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.817 -12.423 -8.040 14.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.018 4.018 3 H 0.052 0.948 4 C -0.645 4.645 5 H 0.193 0.807 6 C -0.209 4.209 7 S 2.590 3.410 8 O -0.981 6.981 9 O -0.968 6.968 10 C -0.707 4.707 11 C -0.074 4.074 12 N -0.261 5.261 13 C -0.056 4.056 14 C -0.046 4.046 15 C -0.574 4.574 16 H 0.084 0.916 17 C -0.197 4.197 18 N -0.574 5.574 19 Si 0.786 3.214 20 H -0.201 1.201 21 H -0.213 1.213 22 H -0.184 1.184 23 H 0.072 0.928 24 H 0.095 0.905 25 H 0.103 0.897 26 H 0.104 0.896 27 H 0.124 0.876 28 H 0.078 0.922 29 H 0.173 0.827 30 H 0.189 0.811 31 H 0.050 0.950 32 H 0.126 0.874 33 H 0.093 0.907 34 H 0.104 0.896 35 H 0.020 0.980 36 H 0.006 0.994 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.402 -12.453 -8.837 15.334 hybrid contribution -0.460 1.575 1.540 2.250 sum 0.942 -10.878 -7.297 13.133 Atomic orbital electron populations 1.22017 0.91864 1.03676 1.02811 1.21296 0.98792 0.94263 0.87460 0.94819 1.29920 1.21531 1.11154 1.01904 0.80719 1.21803 1.05098 1.00345 0.93608 1.08319 0.79592 0.74577 0.78483 1.93538 1.81852 1.35550 1.87148 1.93526 1.79188 1.65576 1.58513 1.30073 1.10218 1.13237 1.17198 1.21794 0.87535 0.97410 1.00636 1.61783 1.02779 1.57630 1.03864 1.22220 0.98455 0.94408 0.90499 1.19659 0.95191 0.93783 0.95945 1.21602 1.30259 0.93323 1.12216 0.91627 1.25936 0.96774 0.97034 0.99983 1.70109 1.43856 1.02002 1.41474 0.85510 0.79182 0.77421 0.79304 1.20088 1.21340 1.18369 0.92768 0.90534 0.89686 0.89573 0.87638 0.92189 0.82734 0.81120 0.94973 0.87431 0.90735 0.89590 0.98000 0.99353 0.93008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.98 7.70 71.98 0.55 -3.42 16 2 C 0.09 2.72 1.30 45.06 0.06 2.77 16 3 H 0.03 1.26 7.07 -2.39 -0.02 1.24 16 4 C -0.53 -12.14 2.79 30.65 0.09 -12.05 16 5 H 0.18 2.85 8.14 -2.39 -0.02 2.83 16 6 C -0.15 -3.10 8.75 71.98 0.63 -2.47 16 7 S 2.40 63.58 4.73 -56.49 -0.27 63.31 16 8 O -0.98 -35.29 18.06 -127.39 -2.30 -37.59 16 9 O -0.97 -28.83 18.11 -127.39 -2.31 -31.13 16 10 C -0.58 -12.23 6.58 72.04 0.47 -11.76 16 11 C 0.06 1.61 4.68 86.44 0.40 2.01 16 12 N -0.54 -16.09 4.52 -872.46 -3.94 -20.03 16 13 C 0.07 2.57 4.67 86.31 0.40 2.98 16 14 C -0.01 -0.36 4.02 29.85 0.12 -0.24 16 15 C -0.54 -28.70 9.11 25.60 0.23 -28.46 16 16 H 0.07 3.32 7.74 -2.91 -0.02 3.29 16 17 C 0.00 0.03 5.46 84.65 0.46 0.49 16 18 N -0.93 -56.14 13.29 21.45 0.28 -55.86 16 19 Si 0.96 43.09 29.54 68.60 2.03 45.12 16 20 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 21 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 22 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 23 H 0.05 1.83 5.26 -2.39 -0.01 1.81 16 24 H 0.08 1.81 6.38 -2.38 -0.02 1.79 16 25 H 0.08 1.89 8.14 -2.39 -0.02 1.88 16 26 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.11 1.76 6.43 -2.39 -0.02 1.75 16 28 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.15 2.65 8.14 -2.39 -0.02 2.63 16 30 H 0.17 2.57 8.14 -2.39 -0.02 2.55 16 31 H 0.03 1.14 7.14 -2.39 -0.02 1.12 16 32 H 0.11 2.89 7.83 -2.39 -0.02 2.87 16 33 H 0.07 2.59 7.94 -2.39 -0.02 2.57 16 34 H 0.09 2.96 6.23 -2.38 -0.01 2.95 16 35 H 0.00 0.09 5.86 -2.39 -0.01 0.08 16 36 H -0.01 -0.64 6.95 -2.38 -0.02 -0.66 16 37 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 Total: -1.00 -72.32 296.61 -2.03 -74.35 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: 1.05 Total: 11.99 kcal Atomic # 6 Polarization: -53.58 SS G_CDS: 3.42 Total: -50.16 kcal Atomic # 7 Polarization: -72.24 SS G_CDS: -3.66 Total: -75.89 kcal Atomic # 8 Polarization: -64.11 SS G_CDS: -4.61 Total: -68.72 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Atomic # 16 Polarization: 63.58 SS G_CDS: -0.27 Total: 63.31 kcal Total: -72.32 -2.03 -74.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127456487.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.861 kcal (2) G-P(sol) polarization free energy of solvation -72.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds