Wall clock time and date at job start Mon Mar 30 2020 00:33:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47052 * 2 1 4 4 N 1.46500 * 109.47384 * 240.00788 * 2 1 3 5 5 S 1.65601 * 120.00557 * 94.99285 * 4 2 1 6 6 O 1.42104 * 104.27400 * 308.93584 * 5 4 2 7 7 O 1.42091 * 104.27666 * 181.07535 * 5 4 2 8 8 C 1.81397 * 104.44558 * 65.00175 * 5 4 2 9 9 C 1.53006 * 109.47227 * 180.02562 * 8 5 4 10 10 C 1.50701 * 109.47374 * 180.02562 * 9 8 5 11 11 H 1.08003 * 119.99375 * 359.97438 * 10 9 8 12 12 C 1.37877 * 120.00025 * 179.97438 * 10 9 8 13 13 N 1.31510 * 119.99875 * 0.02562 * 12 10 9 14 14 Si 1.86792 * 119.99887 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.47320 * 60.00236 * 14 12 10 16 16 H 1.48502 * 109.47057 * 179.97438 * 14 12 10 17 17 H 1.48506 * 109.47492 * 299.99847 * 14 12 10 18 18 C 1.52996 * 109.47538 * 120.00265 * 2 1 3 19 19 C 1.53782 * 113.61346 * 282.67507 * 18 2 1 20 20 C 1.53955 * 87.01861 * 220.04366 * 19 18 2 21 21 C 1.53778 * 113.61787 * 185.06576 * 18 2 1 22 22 H 1.08999 * 109.46749 * 303.72158 * 1 2 3 23 23 H 1.08993 * 109.47137 * 63.72316 * 1 2 3 24 24 H 1.09005 * 109.46999 * 183.72659 * 1 2 3 25 25 H 0.97000 * 119.99764 * 275.00039 * 4 2 1 26 26 H 1.09006 * 109.47615 * 300.00164 * 8 5 4 27 27 H 1.09007 * 109.47270 * 60.00459 * 8 5 4 28 28 H 1.09002 * 109.46330 * 300.00316 * 9 8 5 29 29 H 1.08998 * 109.46996 * 59.99754 * 9 8 5 30 30 H 0.96995 * 120.00222 * 180.02562 * 13 12 10 31 31 H 1.09003 * 112.84707 * 53.86986 * 18 2 1 32 32 H 1.08997 * 113.61431 * 334.56222 * 19 18 2 33 33 H 1.09001 * 113.61613 * 105.47018 * 19 18 2 34 34 H 1.08993 * 113.54271 * 270.81196 * 20 19 18 35 35 H 1.09004 * 113.74021 * 139.94048 * 20 19 18 36 36 H 1.08998 * 113.61391 * 254.53017 * 21 18 2 37 37 H 1.09000 * 113.61139 * 25.43299 * 21 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6904 -1.1962 5 16 2.4121 0.1774 -2.5506 6 8 1.2750 0.9969 -2.7845 7 8 2.8122 -0.8072 -3.4937 8 6 3.8312 1.1875 -2.0441 9 6 4.2933 2.0457 -3.2235 10 6 5.4726 2.8844 -2.8029 11 1 5.8540 2.8128 -1.7950 12 6 6.0645 3.7431 -3.7048 13 7 5.5996 3.8305 -4.9318 14 14 7.5257 4.7832 -3.1832 15 1 8.6356 3.8962 -2.7509 16 1 7.9751 5.6151 -4.3283 17 1 7.1288 5.6647 -2.0560 18 6 2.0401 -0.7213 1.2491 19 6 1.9540 0.1273 2.5288 20 6 3.3254 -0.4576 2.9127 21 6 3.5687 -0.6700 1.4091 22 1 -0.3633 0.5705 0.8548 23 1 -0.3633 0.4549 -0.9214 24 1 -0.3633 -1.0255 0.0668 25 1 2.1110 -1.6560 -1.1950 26 1 3.5399 1.8345 -1.2166 27 1 4.6459 0.5364 -1.7268 28 1 4.5845 1.3989 -4.0512 29 1 3.4785 2.6967 -3.5403 30 1 6.0162 4.4343 -5.5664 31 1 1.6228 -1.7221 1.3600 32 1 1.9738 1.2011 2.3427 33 1 1.1476 -0.1725 3.1981 34 1 3.2594 -1.3860 3.4797 35 1 4.0006 0.2682 3.3659 36 1 4.0639 -1.6125 1.1759 37 1 4.0307 0.1855 0.9164 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157550557.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:33:52 Heat of formation + Delta-G solvation = -101.591298 kcal Electronic energy + Delta-G solvation = -18341.653098 eV Core-core repulsion = 15437.922476 eV Total energy + Delta-G solvation = -2903.730622 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 261.119 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.12268 -38.13057 -37.00060 -36.06527 -35.89120 -33.12845 -30.83200 -27.59800 -26.60562 -26.12919 -23.62294 -22.54469 -20.62748 -20.06023 -19.02082 -18.23357 -17.56186 -16.99572 -16.53592 -16.39797 -15.97610 -15.42824 -15.06650 -14.53681 -14.40166 -13.75174 -13.64014 -13.53938 -13.21618 -13.17541 -13.07123 -12.91123 -12.79658 -12.69836 -12.45217 -12.28896 -12.17581 -12.12193 -11.76178 -11.45377 -11.25561 -11.05615 -10.95508 -10.63842 -10.23737 -8.25742 -6.39864 -0.64843 1.40609 1.44054 1.52228 1.87525 2.38093 2.82465 3.07645 3.29424 3.65530 3.80843 3.82735 4.02109 4.09078 4.10645 4.25253 4.35671 4.51273 4.61481 4.75484 4.94891 4.97086 4.98983 5.01267 5.17792 5.19014 5.26006 5.27624 5.29493 5.42597 5.48727 5.68100 5.72029 6.06339 6.21384 6.73610 7.30296 8.86464 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.020218 B = 0.006004 C = 0.005008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.602329 B = 4662.396866 C = 5590.083442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.150 3.850 3 H 0.080 0.920 4 N -1.100 6.100 5 S 2.617 3.383 6 O -0.996 6.996 7 O -1.003 7.003 8 C -0.588 4.588 9 C 0.021 3.979 10 C -0.539 4.539 11 H 0.076 0.924 12 C -0.004 4.004 13 N -0.935 5.935 14 Si 0.973 3.027 15 H -0.263 1.263 16 H -0.284 1.284 17 H -0.263 1.263 18 C -0.108 4.108 19 C -0.131 4.131 20 C -0.140 4.140 21 C -0.150 4.150 22 H 0.083 0.917 23 H 0.045 0.955 24 H 0.071 0.929 25 H 0.424 0.576 26 H 0.139 0.861 27 H 0.142 0.858 28 H 0.005 0.995 29 H 0.006 0.994 30 H 0.267 0.733 31 H 0.110 0.890 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.089 0.911 35 H 0.066 0.934 36 H 0.071 0.929 37 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.623 -9.566 17.513 21.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.043 3.957 3 H 0.098 0.902 4 N -0.861 5.861 5 S 2.714 3.286 6 O -0.985 6.985 7 O -0.993 6.993 8 C -0.720 4.720 9 C -0.018 4.018 10 C -0.578 4.578 11 H 0.094 0.906 12 C -0.202 4.202 13 N -0.574 5.574 14 Si 0.797 3.203 15 H -0.188 1.188 16 H -0.210 1.210 17 H -0.187 1.187 18 C -0.128 4.128 19 C -0.169 4.169 20 C -0.177 4.177 21 C -0.188 4.188 22 H 0.102 0.898 23 H 0.064 0.936 24 H 0.090 0.910 25 H 0.261 0.739 26 H 0.158 0.842 27 H 0.160 0.840 28 H 0.023 0.977 29 H 0.025 0.975 30 H 0.076 0.924 31 H 0.128 0.872 32 H 0.100 0.900 33 H 0.101 0.899 34 H 0.108 0.892 35 H 0.085 0.915 36 H 0.090 0.910 37 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -7.107 -9.362 16.501 20.259 hybrid contribution 1.132 0.446 -0.065 1.218 sum -5.975 -8.916 16.435 19.629 Atomic orbital electron populations 1.22295 0.94704 1.03272 1.02626 1.21044 0.94899 0.95722 0.84007 0.90197 1.55343 1.81945 1.19524 1.29294 1.04503 0.76180 0.74372 0.73549 1.93504 1.48870 1.71538 1.84616 1.93494 1.85047 1.59363 1.61387 1.30350 1.18538 1.13575 1.09515 1.18809 0.97180 0.94279 0.91520 1.21485 1.14478 1.23137 0.98681 0.90583 1.26114 1.00790 0.98500 0.94799 1.70095 1.42999 1.38716 1.05623 0.85377 0.78602 0.78408 0.77948 1.18790 1.20984 1.18713 1.22872 0.96385 1.00624 0.92935 1.22964 0.98123 0.99702 0.96117 1.22841 0.97343 1.01620 0.95900 1.23031 0.95931 1.02468 0.97333 0.89819 0.93590 0.91035 0.73948 0.84243 0.83999 0.97689 0.97546 0.92398 0.87228 0.90047 0.89902 0.89205 0.91541 0.90988 0.90752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.38 9.45 71.98 0.68 -2.70 16 2 C 0.15 3.08 2.38 44.99 0.11 3.18 16 3 H 0.08 1.71 7.06 -2.39 -0.02 1.69 16 4 N -1.10 -26.55 5.22 -169.39 -0.88 -27.44 16 5 S 2.62 93.66 5.38 -56.49 -0.30 93.36 16 6 O -1.00 -41.76 17.06 -127.65 -2.18 -43.94 16 7 O -1.00 -42.46 18.08 -127.65 -2.31 -44.77 16 8 C -0.59 -22.14 5.90 71.98 0.42 -21.71 16 9 C 0.02 1.10 4.98 29.85 0.15 1.25 16 10 C -0.54 -29.86 9.11 25.60 0.23 -29.62 16 11 H 0.08 3.86 7.74 -2.91 -0.02 3.84 16 12 C 0.00 -0.21 5.46 84.66 0.46 0.26 16 13 N -0.93 -57.16 13.29 21.45 0.28 -56.88 16 14 Si 0.97 43.22 29.54 68.60 2.03 45.25 16 15 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 16 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 17 H -0.26 -11.03 7.11 99.48 0.71 -10.33 16 18 C -0.11 -1.64 3.23 -10.27 -0.03 -1.67 16 19 C -0.13 -1.75 7.56 31.18 0.24 -1.51 16 20 C -0.14 -1.91 8.09 31.18 0.25 -1.66 16 21 C -0.15 -2.49 7.51 31.12 0.23 -2.26 16 22 H 0.08 1.31 8.12 -2.39 -0.02 1.30 16 23 H 0.04 1.18 7.37 -2.39 -0.02 1.16 16 24 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 25 H 0.42 8.29 8.80 -96.75 -0.85 7.44 16 26 H 0.14 4.56 7.44 -2.39 -0.02 4.54 16 27 H 0.14 4.69 8.14 -2.39 -0.02 4.67 16 28 H 0.00 0.27 8.14 -2.39 -0.02 0.25 16 29 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 30 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 31 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.08 1.16 8.04 -2.39 -0.02 1.14 16 33 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 36 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.07 1.43 8.10 -2.39 -0.02 1.41 16 Total: -1.00 -74.20 317.83 -0.43 -74.63 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: 0.19 Total: 16.23 kcal Atomic # 6 Polarization: -59.19 SS G_CDS: 2.74 Total: -56.45 kcal Atomic # 7 Polarization: -83.71 SS G_CDS: -0.60 Total: -84.31 kcal Atomic # 8 Polarization: -84.22 SS G_CDS: -4.49 Total: -88.71 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Atomic # 16 Polarization: 93.66 SS G_CDS: -0.30 Total: 93.36 kcal Total: -74.20 -0.43 -74.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157550557.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.962 kcal (2) G-P(sol) polarization free energy of solvation -74.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds