Wall clock time and date at job start Mon Mar 30 2020 00:32:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.12043 * 2 1 4 4 C 1.52161 * 109.12827 * 119.10649 * 2 1 3 5 5 O 1.43205 * 110.20349 * 181.84808 * 4 2 1 6 6 C 1.35646 * 115.64166 * 270.52156 * 5 4 2 7 7 C 1.38811 * 120.30481 * 252.04566 * 6 5 4 8 8 C 1.38145 * 119.82965 * 175.68396 * 7 6 5 9 9 C 1.38285 * 120.30722 * 0.52515 * 8 7 6 10 10 C 1.38431 * 120.00221 * 0.94781 * 9 8 7 11 11 C 1.37721 * 119.71192 * 359.43464 * 10 9 8 12 12 C 1.51531 * 120.73630 * 177.75094 * 11 10 9 13 13 N 1.46386 * 109.12663 * 240.83969 * 2 1 3 14 14 C 1.34776 * 119.81801 * 356.00955 * 13 2 1 15 15 O 1.21697 * 119.99510 * 354.35101 * 14 13 2 16 16 C 1.46375 * 120.00668 * 174.34594 * 14 13 2 17 17 H 1.07999 * 119.99517 * 5.15239 * 16 14 13 18 18 C 1.40044 * 119.99941 * 185.14740 * 16 14 13 19 19 N 1.30665 * 120.00637 * 0.02562 * 18 16 14 20 20 Si 1.86803 * 119.99554 * 180.02562 * 18 16 14 21 21 H 1.48494 * 109.47303 * 60.00016 * 20 18 16 22 22 H 1.48498 * 109.47155 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47264 * 299.99863 * 20 18 16 24 24 H 1.09005 * 109.46666 * 184.47720 * 1 2 3 25 25 H 1.08996 * 109.46783 * 304.47767 * 1 2 3 26 26 H 1.09004 * 109.46932 * 64.48189 * 1 2 3 27 27 H 1.08994 * 109.34972 * 302.07592 * 4 2 1 28 28 H 1.09004 * 109.34973 * 61.77171 * 4 2 1 29 29 H 1.08003 * 120.08393 * 355.96008 * 7 6 5 30 30 H 1.07999 * 119.84584 * 180.55557 * 8 7 6 31 31 H 1.08000 * 120.00292 * 180.91654 * 9 8 7 32 32 H 1.08004 * 120.14259 * 179.41680 * 10 9 8 33 33 H 1.09000 * 109.58946 * 235.04757 * 12 11 10 34 34 H 1.09003 * 109.58986 * 355.48314 * 12 11 10 35 35 H 0.97002 * 120.00407 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8870 1.0298 0.0000 4 6 2.0286 -0.6993 1.2560 5 8 3.4598 -0.6746 1.3008 6 6 4.0838 -1.7205 0.7037 7 6 4.7132 -2.6913 1.4707 8 6 5.2682 -3.7981 0.8581 9 6 5.2092 -3.9379 -0.5164 10 6 4.6092 -2.9567 -1.2868 11 6 4.0626 -1.8493 -0.6773 12 6 3.4453 -0.7373 -1.5011 13 7 2.0097 -0.6739 -1.2078 14 6 1.1272 -1.2397 -2.0548 15 8 -0.0541 -1.2802 -1.7651 16 6 1.5894 -1.8054 -3.3232 17 1 2.6459 -1.8447 -3.5438 18 6 0.6616 -2.2958 -4.2506 19 7 -0.6166 -2.2479 -3.9840 20 14 1.2516 -3.0184 -5.8690 21 1 2.1372 -4.1795 -5.5992 22 1 0.0818 -3.4627 -6.6685 23 1 2.0050 -1.9868 -6.6264 24 1 -0.3633 -1.0246 0.0802 25 1 -0.3633 0.5817 0.8471 26 1 -0.3633 0.4427 -0.9275 27 1 1.6310 -0.1910 2.1344 28 1 1.6874 -1.7345 1.2527 29 1 4.7648 -2.5838 2.5442 30 1 5.7500 -4.5580 1.4554 31 1 5.6317 -4.8123 -0.9890 32 1 4.5703 -3.0590 -2.3613 33 1 3.9134 0.2124 -1.2422 34 1 3.5929 -0.9429 -2.5614 35 1 -1.2592 -2.5880 -4.6262 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274972070.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:21 Heat of formation + Delta-G solvation = -21.235059 kcal Electronic energy + Delta-G solvation = -20273.415227 eV Core-core repulsion = 17237.725162 eV Total energy + Delta-G solvation = -3035.690065 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 261.115 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.20133 -37.98786 -36.92843 -34.17638 -32.97635 -32.06228 -30.35921 -29.22018 -26.18809 -26.05825 -24.81000 -22.46657 -21.46213 -20.87641 -19.03541 -17.63387 -16.47378 -15.92161 -15.50959 -15.24964 -15.09352 -14.75342 -14.28632 -13.98113 -13.59148 -13.01793 -12.68236 -12.49036 -12.03444 -11.85503 -11.43005 -11.35486 -11.27230 -11.13100 -11.10110 -10.91697 -10.81583 -10.50095 -10.27141 -10.06060 -9.54909 -8.89737 -8.55602 -8.18067 -7.30352 -7.15192 -6.18191 -4.70287 1.50052 1.66498 3.10776 3.16631 3.17383 3.68336 4.03006 4.28775 4.49023 4.60220 5.14096 5.18427 5.28869 5.47134 5.57067 5.60288 5.68450 5.73021 5.79600 5.85798 6.03104 6.20406 6.23178 6.30818 6.36561 6.47469 6.62953 6.76393 6.94104 6.99089 7.05457 7.36127 7.39831 7.55919 7.85998 8.08973 8.27197 8.96522 9.33952 10.50944 10.69367 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.019150 B = 0.008747 C = 0.006484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.766667 B = 3200.406202 C = 4317.614923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.124 3.876 3 H 0.056 0.944 4 C 0.055 3.945 5 O -0.334 6.334 6 C 0.104 3.896 7 C -0.143 4.143 8 C -0.115 4.115 9 C -0.134 4.134 10 C -0.085 4.085 11 C -0.117 4.117 12 C 0.162 3.838 13 N -0.634 5.634 14 C 0.557 3.443 15 O -0.564 6.564 16 C -0.542 4.542 17 H 0.071 0.929 18 C 0.089 3.911 19 N -0.766 5.766 20 Si 0.903 3.097 21 H -0.267 1.267 22 H -0.280 1.280 23 H -0.267 1.267 24 H 0.079 0.921 25 H 0.014 0.986 26 H 0.076 0.924 27 H 0.095 0.905 28 H 0.058 0.942 29 H 0.122 0.878 30 H 0.120 0.880 31 H 0.121 0.879 32 H 0.130 0.870 33 H 0.064 0.936 34 H 0.101 0.899 35 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.441 -0.508 6.346 11.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.018 3.982 3 H 0.074 0.926 4 C -0.021 4.021 5 O -0.250 6.250 6 C 0.060 3.940 7 C -0.161 4.161 8 C -0.133 4.133 9 C -0.152 4.152 10 C -0.104 4.104 11 C -0.120 4.120 12 C 0.038 3.962 13 N -0.371 5.371 14 C 0.364 3.636 15 O -0.447 6.447 16 C -0.578 4.578 17 H 0.089 0.911 18 C -0.131 4.131 19 N -0.395 5.395 20 Si 0.728 3.272 21 H -0.192 1.192 22 H -0.205 1.205 23 H -0.192 1.192 24 H 0.098 0.902 25 H 0.032 0.968 26 H 0.095 0.905 27 H 0.113 0.887 28 H 0.077 0.923 29 H 0.140 0.860 30 H 0.138 0.862 31 H 0.139 0.861 32 H 0.148 0.852 33 H 0.082 0.918 34 H 0.119 0.881 35 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 8.621 -0.383 6.528 10.821 hybrid contribution 0.353 -0.575 -0.814 1.057 sum 8.974 -0.958 5.715 10.683 Atomic orbital electron populations 1.22147 0.92009 1.03460 1.00058 1.21163 0.96477 0.95052 0.85463 0.92620 1.23348 0.77943 1.01654 0.99170 1.86034 1.20015 1.42796 1.76204 1.18611 0.96730 0.88334 0.90344 1.21159 1.02094 0.93137 0.99730 1.20897 1.00299 0.97295 0.94826 1.21162 1.00837 0.99268 0.93899 1.20957 0.96328 0.92702 1.00403 1.21175 0.98913 0.97929 0.93950 1.20439 0.82086 0.94257 0.99449 1.48057 1.05107 1.60687 1.23280 1.18218 0.84533 0.77422 0.83405 1.90639 1.17032 1.61272 1.75788 1.20962 0.93799 1.42256 1.00824 0.91136 1.25694 0.94413 0.93933 0.99026 1.69979 1.01488 1.34206 1.33811 0.86497 0.78942 0.79917 0.81852 1.19212 1.20537 1.19218 0.90231 0.96752 0.90528 0.88701 0.92328 0.85999 0.86221 0.86142 0.85242 0.91776 0.88114 0.92004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.52 7.52 37.16 0.28 -2.24 16 2 C 0.12 2.47 3.38 -68.42 -0.23 2.24 16 3 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 4 C 0.05 0.96 5.92 36.73 0.22 1.18 16 5 O -0.33 -6.01 9.92 -18.64 -0.18 -6.20 16 6 C 0.10 1.85 5.60 -39.19 -0.22 1.63 16 7 C -0.14 -2.19 10.00 -39.40 -0.39 -2.58 16 8 C -0.11 -1.58 10.03 -39.60 -0.40 -1.98 16 9 C -0.13 -1.93 10.06 -39.49 -0.40 -2.33 16 10 C -0.09 -1.43 9.71 -39.70 -0.39 -1.81 16 11 C -0.12 -2.17 5.48 -104.23 -0.57 -2.74 16 12 C 0.16 3.17 5.57 -4.69 -0.03 3.14 16 13 N -0.63 -14.36 2.70 -169.07 -0.46 -14.82 16 14 C 0.56 15.16 7.41 -12.99 -0.10 15.07 16 15 O -0.56 -16.88 10.27 5.19 0.05 -16.83 16 16 C -0.54 -14.56 8.79 -35.63 -0.31 -14.88 16 17 H 0.07 1.72 5.74 -52.49 -0.30 1.42 16 18 C 0.09 2.40 5.50 -17.37 -0.10 2.30 16 19 N -0.77 -22.12 11.84 55.55 0.66 -21.46 16 20 Si 0.90 19.49 29.56 -169.99 -5.02 14.46 16 21 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 22 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 23 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 24 H 0.08 1.89 6.58 -51.93 -0.34 1.55 16 25 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 26 H 0.08 1.84 6.72 -51.93 -0.35 1.50 16 27 H 0.10 1.39 8.14 -51.93 -0.42 0.96 16 28 H 0.06 1.12 7.86 -51.93 -0.41 0.71 16 29 H 0.12 1.62 8.06 -52.48 -0.42 1.20 16 30 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 31 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 32 H 0.13 2.06 8.00 -52.48 -0.42 1.64 16 33 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.10 1.98 5.28 -51.93 -0.27 1.70 16 35 H 0.27 7.12 8.29 -40.82 -0.34 6.78 16 LS Contribution 285.79 15.07 4.31 4.31 Total: -1.00 -31.53 285.79 -7.47 -39.00 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -4.19 Total: 4.52 kcal Atomic # 6 Polarization: -0.35 SS G_CDS: -2.63 Total: -2.98 kcal Atomic # 7 Polarization: -36.48 SS G_CDS: 0.20 Total: -36.28 kcal Atomic # 8 Polarization: -22.90 SS G_CDS: -0.13 Total: -23.03 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -5.02 Total: 14.46 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -31.53 -7.47 -39.00 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274972070.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.763 kcal (2) G-P(sol) polarization free energy of solvation -31.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds