Wall clock time and date at job start Mon Mar 30 2020 00:32:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.12043 * 2 1 4 4 C 1.52161 * 109.12827 * 119.10649 * 2 1 3 5 5 O 1.43205 * 110.20349 * 181.84808 * 4 2 1 6 6 C 1.35646 * 115.64166 * 270.52156 * 5 4 2 7 7 C 1.38811 * 120.30481 * 252.04566 * 6 5 4 8 8 C 1.38145 * 119.82965 * 175.68396 * 7 6 5 9 9 C 1.38285 * 120.30722 * 0.52515 * 8 7 6 10 10 C 1.38431 * 120.00221 * 0.94781 * 9 8 7 11 11 C 1.37721 * 119.71192 * 359.43464 * 10 9 8 12 12 C 1.51531 * 120.73630 * 177.75094 * 11 10 9 13 13 N 1.46386 * 109.12663 * 240.83969 * 2 1 3 14 14 C 1.34776 * 119.81801 * 356.00955 * 13 2 1 15 15 O 1.21697 * 119.99510 * 354.35101 * 14 13 2 16 16 C 1.46375 * 120.00668 * 174.34594 * 14 13 2 17 17 H 1.07999 * 119.99517 * 5.15239 * 16 14 13 18 18 C 1.40044 * 119.99941 * 185.14740 * 16 14 13 19 19 N 1.30665 * 120.00637 * 0.02562 * 18 16 14 20 20 Si 1.86803 * 119.99554 * 180.02562 * 18 16 14 21 21 H 1.48494 * 109.47303 * 60.00016 * 20 18 16 22 22 H 1.48498 * 109.47155 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47264 * 299.99863 * 20 18 16 24 24 H 1.09005 * 109.46666 * 184.47720 * 1 2 3 25 25 H 1.08996 * 109.46783 * 304.47767 * 1 2 3 26 26 H 1.09004 * 109.46932 * 64.48189 * 1 2 3 27 27 H 1.08994 * 109.34972 * 302.07592 * 4 2 1 28 28 H 1.09004 * 109.34973 * 61.77171 * 4 2 1 29 29 H 1.08003 * 120.08393 * 355.96008 * 7 6 5 30 30 H 1.07999 * 119.84584 * 180.55557 * 8 7 6 31 31 H 1.08000 * 120.00292 * 180.91654 * 9 8 7 32 32 H 1.08004 * 120.14259 * 179.41680 * 10 9 8 33 33 H 1.09000 * 109.58946 * 235.04757 * 12 11 10 34 34 H 1.09003 * 109.58986 * 355.48314 * 12 11 10 35 35 H 0.97002 * 120.00407 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8870 1.0298 0.0000 4 6 2.0286 -0.6993 1.2560 5 8 3.4598 -0.6746 1.3008 6 6 4.0838 -1.7205 0.7037 7 6 4.7132 -2.6913 1.4707 8 6 5.2682 -3.7981 0.8581 9 6 5.2092 -3.9379 -0.5164 10 6 4.6092 -2.9567 -1.2868 11 6 4.0626 -1.8493 -0.6773 12 6 3.4453 -0.7373 -1.5011 13 7 2.0097 -0.6739 -1.2078 14 6 1.1272 -1.2397 -2.0548 15 8 -0.0541 -1.2802 -1.7651 16 6 1.5894 -1.8054 -3.3232 17 1 2.6459 -1.8447 -3.5438 18 6 0.6616 -2.2958 -4.2506 19 7 -0.6166 -2.2479 -3.9840 20 14 1.2516 -3.0184 -5.8690 21 1 2.1372 -4.1795 -5.5992 22 1 0.0818 -3.4627 -6.6685 23 1 2.0050 -1.9868 -6.6264 24 1 -0.3633 -1.0246 0.0802 25 1 -0.3633 0.5817 0.8471 26 1 -0.3633 0.4427 -0.9275 27 1 1.6310 -0.1910 2.1344 28 1 1.6874 -1.7345 1.2527 29 1 4.7648 -2.5838 2.5442 30 1 5.7500 -4.5580 1.4554 31 1 5.6317 -4.8123 -0.9890 32 1 4.5703 -3.0590 -2.3613 33 1 3.9134 0.2124 -1.2422 34 1 3.5929 -0.9429 -2.5614 35 1 -1.2592 -2.5880 -4.6262 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274972070.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:21 Heat of formation + Delta-G solvation = -41.018391 kcal Electronic energy + Delta-G solvation = -20274.273097 eV Core-core repulsion = 17237.725162 eV Total energy + Delta-G solvation = -3036.547935 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 261.115 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.62328 -39.69459 -38.30449 -36.00002 -34.82297 -33.76695 -31.71342 -30.63729 -28.17884 -27.57293 -26.34291 -23.95073 -22.98516 -22.19878 -20.87765 -19.01367 -18.32397 -17.55866 -17.06905 -16.78729 -16.45750 -16.26765 -15.87224 -15.64971 -14.93873 -14.63974 -14.27562 -13.96839 -13.63118 -13.33679 -13.14710 -13.07443 -12.84091 -12.81537 -12.60581 -12.47994 -12.37854 -12.17574 -11.97145 -11.80114 -10.96346 -10.89356 -9.79729 -9.44979 -9.22070 -9.07062 -8.19735 -6.80835 0.25549 0.44258 1.39256 1.41682 1.52536 2.22281 2.41449 2.47404 2.76585 3.17536 3.59607 3.83170 3.95603 4.05323 4.09931 4.14928 4.21627 4.38995 4.49176 4.55667 4.61907 4.71091 4.79543 4.80925 4.87861 5.10288 5.22168 5.37222 5.44815 5.56362 5.59814 5.65233 5.73889 5.87326 6.14713 6.39595 6.52333 6.90434 7.39463 8.49534 8.68866 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.019150 B = 0.008747 C = 0.006484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.766667 B = 3200.406202 C = 4317.614923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.116 3.884 3 H 0.072 0.928 4 C 0.066 3.934 5 O -0.335 6.335 6 C 0.077 3.923 7 C -0.143 4.143 8 C -0.106 4.106 9 C -0.130 4.130 10 C -0.102 4.102 11 C -0.143 4.143 12 C 0.162 3.838 13 N -0.638 5.638 14 C 0.542 3.458 15 O -0.605 6.605 16 C -0.565 4.565 17 H 0.088 0.912 18 C 0.034 3.966 19 N -0.819 5.819 20 Si 0.986 3.014 21 H -0.254 1.254 22 H -0.277 1.277 23 H -0.255 1.255 24 H 0.045 0.955 25 H 0.056 0.944 26 H 0.036 0.964 27 H 0.132 0.868 28 H 0.038 0.962 29 H 0.144 0.856 30 H 0.159 0.841 31 H 0.151 0.849 32 H 0.129 0.871 33 H 0.075 0.925 34 H 0.093 0.907 35 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.869 -1.569 7.025 13.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.012 3.988 3 H 0.089 0.911 4 C -0.010 4.010 5 O -0.251 6.251 6 C 0.034 3.966 7 C -0.162 4.162 8 C -0.124 4.124 9 C -0.148 4.148 10 C -0.121 4.121 11 C -0.145 4.145 12 C 0.039 3.961 13 N -0.374 5.374 14 C 0.348 3.652 15 O -0.491 6.491 16 C -0.602 4.602 17 H 0.106 0.894 18 C -0.181 4.181 19 N -0.449 5.449 20 Si 0.806 3.194 21 H -0.178 1.178 22 H -0.202 1.202 23 H -0.179 1.179 24 H 0.064 0.936 25 H 0.074 0.926 26 H 0.055 0.945 27 H 0.150 0.850 28 H 0.056 0.944 29 H 0.162 0.838 30 H 0.177 0.823 31 H 0.169 0.831 32 H 0.147 0.853 33 H 0.094 0.906 34 H 0.111 0.889 35 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 11.105 -1.424 7.236 13.331 hybrid contribution -0.348 -0.232 -0.932 1.022 sum 10.757 -1.656 6.304 12.577 Atomic orbital electron populations 1.21800 0.93022 1.01594 0.99662 1.21376 0.95686 0.96005 0.85747 0.91059 1.23238 0.78261 1.00476 0.99011 1.86034 1.19711 1.43380 1.76015 1.18900 0.97947 0.89374 0.90425 1.21479 1.01146 0.92703 1.00823 1.21371 0.98820 0.97288 0.94881 1.21549 0.99540 0.99320 0.94350 1.21134 0.97099 0.93023 1.00863 1.21113 1.00585 0.98350 0.94415 1.20491 0.80390 0.95758 0.99462 1.47929 1.06016 1.59909 1.23527 1.18558 0.84614 0.77652 0.84365 1.90625 1.18786 1.62806 1.76885 1.21454 0.94942 1.42508 1.01247 0.89387 1.26850 0.94236 0.93803 1.03245 1.70153 1.03244 1.35805 1.35686 0.85240 0.78554 0.79440 0.76212 1.17755 1.20198 1.17862 0.93587 0.92564 0.94459 0.85008 0.94380 0.83830 0.82301 0.83085 0.85294 0.90634 0.88930 0.91757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -4.49 7.52 71.98 0.54 -3.95 16 2 C 0.12 4.67 3.38 44.74 0.15 4.82 16 3 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 4 C 0.07 2.25 5.92 71.70 0.42 2.68 16 5 O -0.33 -11.56 9.92 -89.60 -0.89 -12.45 16 6 C 0.08 2.65 5.60 22.52 0.13 2.78 16 7 C -0.14 -3.97 10.00 22.38 0.22 -3.75 16 8 C -0.11 -2.50 10.03 22.26 0.22 -2.28 16 9 C -0.13 -3.35 10.06 22.33 0.22 -3.12 16 10 C -0.10 -3.31 9.71 22.19 0.22 -3.09 16 11 C -0.14 -5.19 5.48 -19.61 -0.11 -5.30 16 12 C 0.16 6.42 5.57 85.87 0.48 6.89 16 13 N -0.64 -29.64 2.70 -807.03 -2.18 -31.81 16 14 C 0.54 30.73 7.41 86.36 0.64 31.38 16 15 O -0.60 -38.27 10.27 -4.34 -0.04 -38.32 16 16 C -0.57 -31.19 8.79 24.83 0.22 -30.97 16 17 H 0.09 4.37 5.74 -2.91 -0.02 4.35 16 18 C 0.03 1.86 5.50 85.30 0.47 2.32 16 19 N -0.82 -49.15 11.84 21.83 0.26 -48.89 16 20 Si 0.99 40.22 29.56 68.60 2.03 42.24 16 21 H -0.25 -9.70 7.11 99.48 0.71 -9.00 16 22 H -0.28 -11.04 7.11 99.48 0.71 -10.34 16 23 H -0.25 -9.78 7.11 99.48 0.71 -9.07 16 24 H 0.05 2.28 6.58 -2.38 -0.02 2.26 16 25 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 26 H 0.04 1.88 6.72 -2.38 -0.02 1.86 16 27 H 0.13 3.50 8.14 -2.39 -0.02 3.48 16 28 H 0.04 1.45 7.86 -2.38 -0.02 1.43 16 29 H 0.14 3.29 8.06 -2.91 -0.02 3.27 16 30 H 0.16 2.53 8.06 -2.91 -0.02 2.50 16 31 H 0.15 2.92 8.06 -2.91 -0.02 2.90 16 32 H 0.13 4.04 8.00 -2.91 -0.02 4.01 16 33 H 0.08 2.73 8.14 -2.39 -0.02 2.71 16 34 H 0.09 3.71 5.28 -2.39 -0.01 3.70 16 35 H 0.27 14.97 8.29 -92.71 -0.77 14.20 16 Total: -1.00 -72.11 285.79 4.11 -68.00 By element: Atomic # 1 Polarization: 21.70 SS G_CDS: 1.10 Total: 22.80 kcal Atomic # 6 Polarization: -5.41 SS G_CDS: 3.83 Total: -1.58 kcal Atomic # 7 Polarization: -78.78 SS G_CDS: -1.92 Total: -80.70 kcal Atomic # 8 Polarization: -49.83 SS G_CDS: -0.93 Total: -50.76 kcal Atomic # 14 Polarization: 40.22 SS G_CDS: 2.03 Total: 42.24 kcal Total: -72.11 4.11 -68.00 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274972070.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.983 kcal (2) G-P(sol) polarization free energy of solvation -72.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds