Wall clock time and date at job start Mon Mar 30 2020 01:01:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.37102 * 119.99605 * 2 1 4 4 H 1.08001 * 119.99305 * 202.39810 * 3 2 1 5 5 C 1.38945 * 119.99975 * 22.40495 * 3 2 1 6 6 N 1.31408 * 120.00633 * 11.59997 * 5 3 2 7 7 Si 1.86801 * 119.99649 * 191.60782 * 5 3 2 8 8 H 1.48505 * 109.47233 * 359.97438 * 7 5 3 9 9 H 1.48497 * 109.47391 * 119.99657 * 7 5 3 10 10 H 1.48501 * 109.47232 * 239.99802 * 7 5 3 11 11 C 1.34772 * 120.00108 * 179.97438 * 2 1 3 12 12 O 1.21293 * 120.00272 * 180.02562 * 11 2 1 13 13 C 1.50701 * 119.99960 * 0.02562 * 11 2 1 14 14 C 1.50704 * 109.47085 * 179.97438 * 13 11 2 15 15 C 1.38288 * 120.11499 * 90.00249 * 14 13 11 16 16 C 1.37935 * 120.35064 * 180.17582 * 15 14 13 17 17 C 1.39280 * 120.24304 * 0.05992 * 16 15 14 18 18 C 1.38979 * 118.86007 * 359.59264 * 17 16 15 19 19 C 1.37672 * 120.77159 * 0.54920 * 18 17 16 20 20 C 1.51644 * 106.98639 * 180.57635 * 18 17 16 21 21 C 1.54707 * 101.93640 * 15.70983 * 20 18 17 22 22 O 1.36130 * 129.87934 * 179.56788 * 17 16 15 23 23 H 1.08993 * 109.47317 * 272.15765 * 1 2 3 24 24 H 1.08997 * 109.47086 * 32.16021 * 1 2 3 25 25 H 1.09007 * 109.46623 * 152.15381 * 1 2 3 26 26 H 0.96998 * 120.00494 * 179.97438 * 6 5 3 27 27 H 1.08993 * 109.47497 * 60.00203 * 13 11 2 28 28 H 1.09002 * 109.47089 * 299.99571 * 13 11 2 29 29 H 1.08009 * 119.82707 * 0.19344 * 15 14 13 30 30 H 1.08002 * 119.87404 * 180.02562 * 16 15 14 31 31 H 1.08000 * 119.97935 * 179.61691 * 19 18 17 32 32 H 1.09000 * 110.94144 * 257.54341 * 20 18 17 33 33 H 1.08992 * 110.94219 * 133.88356 * 20 18 17 34 34 H 1.09004 * 110.74102 * 92.95121 * 21 20 18 35 35 H 1.08994 * 110.74949 * 216.10933 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1505 1.1874 0.0000 4 1 3.1694 1.2226 -0.3564 5 6 1.5344 2.3452 0.4586 6 7 0.3896 2.2708 1.0995 7 14 2.3333 4.0078 0.1640 8 1 3.6079 3.8206 -0.5747 9 1 1.4185 4.8620 -0.6352 10 1 2.6091 4.6626 1.4680 11 6 2.1390 -1.1671 0.0005 12 8 3.3519 -1.1672 0.0010 13 6 1.3855 -2.4723 0.0005 14 6 2.3648 -3.6177 0.0005 15 6 2.8156 -4.1451 1.1967 16 6 3.7148 -5.1911 1.2024 17 6 4.1777 -5.7248 0.0021 18 6 3.7115 -5.1910 -1.1934 19 6 2.8163 -4.1450 -1.1961 20 6 4.3703 -5.9718 -2.3140 21 6 4.9023 -7.2174 -1.5663 22 8 5.0595 -6.7377 -0.2203 23 1 -0.3633 0.0387 1.0269 24 1 -0.3633 0.8700 -0.5470 25 1 -0.3633 -0.9087 -0.4801 26 1 -0.0404 3.0791 1.4200 27 1 0.7592 -2.5303 -0.8896 28 1 0.7585 -2.5298 0.8903 29 1 2.4617 -3.7360 2.1316 30 1 4.0615 -5.5974 2.1411 31 1 2.4671 -3.7360 -2.1327 32 1 5.1889 -5.4037 -2.7559 33 1 3.6409 -6.2549 -3.0728 34 1 4.1765 -8.0298 -1.6045 35 1 5.8589 -7.5366 -1.9798 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299542804.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:54 Heat of formation + Delta-G solvation = -53.173017 kcal Electronic energy + Delta-G solvation = -19000.787890 eV Core-core repulsion = 15963.712891 eV Total energy + Delta-G solvation = -3037.074999 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 261.115 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.99423 -40.43063 -38.45288 -36.57097 -33.79158 -33.59090 -32.79128 -30.14690 -28.86667 -27.72453 -26.03320 -24.29554 -22.93275 -22.36460 -20.47453 -18.85738 -18.32958 -17.83642 -17.64081 -17.03613 -16.54202 -16.25185 -15.99627 -15.46180 -15.03296 -14.49666 -14.29105 -14.10498 -13.84455 -13.77268 -13.38919 -13.22013 -13.07388 -12.81527 -12.69175 -12.61589 -12.47434 -12.19639 -12.10571 -11.70582 -11.60503 -11.00973 -10.34252 -9.80054 -9.65952 -8.95692 -8.30825 -5.96359 0.35061 0.41907 1.35853 1.40707 1.54364 2.07095 2.28342 2.36432 2.67743 3.11136 3.25122 3.50611 3.70018 3.90940 3.99496 4.17825 4.20284 4.33036 4.43084 4.48078 4.63035 4.67279 4.69255 4.77767 4.89679 4.92148 5.08343 5.18458 5.30427 5.41189 5.43469 5.46123 5.65726 5.69908 6.11846 6.26728 6.51791 7.20198 7.51191 8.08050 8.70468 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.040644 B = 0.004248 C = 0.004145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.746713 B = 6589.437396 C = 6754.119129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.121 3.879 2 N -0.467 5.467 3 C -0.342 4.342 4 H 0.068 0.932 5 C -0.002 4.002 6 N -0.897 5.897 7 Si 0.987 3.013 8 H -0.276 1.276 9 H -0.264 1.264 10 H -0.276 1.276 11 C 0.441 3.559 12 O -0.629 6.629 13 C -0.077 4.077 14 C -0.091 4.091 15 C -0.086 4.086 16 C -0.146 4.146 17 C 0.079 3.921 18 C -0.185 4.185 19 C -0.071 4.071 20 C -0.106 4.106 21 C 0.049 3.951 22 O -0.325 6.325 23 H 0.046 0.954 24 H 0.051 0.949 25 H 0.073 0.927 26 H 0.273 0.727 27 H 0.114 0.886 28 H 0.108 0.892 29 H 0.135 0.865 30 H 0.140 0.860 31 H 0.130 0.870 32 H 0.091 0.909 33 H 0.114 0.886 34 H 0.093 0.907 35 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.080 -15.847 -5.312 16.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.022 4.022 2 N -0.187 5.187 3 C -0.471 4.471 4 H 0.085 0.915 5 C -0.204 4.204 6 N -0.536 5.536 7 Si 0.811 3.189 8 H -0.201 1.201 9 H -0.189 1.189 10 H -0.201 1.201 11 C 0.231 3.769 12 O -0.517 6.517 13 C -0.117 4.117 14 C -0.092 4.092 15 C -0.104 4.104 16 C -0.164 4.164 17 C 0.034 3.966 18 C -0.186 4.186 19 C -0.089 4.089 20 C -0.143 4.143 21 C -0.025 4.025 22 O -0.240 6.240 23 H 0.065 0.935 24 H 0.070 0.930 25 H 0.091 0.909 26 H 0.082 0.918 27 H 0.132 0.868 28 H 0.127 0.873 29 H 0.153 0.847 30 H 0.158 0.842 31 H 0.148 0.852 32 H 0.109 0.891 33 H 0.132 0.868 34 H 0.111 0.889 35 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 0.498 -15.803 -5.094 16.611 hybrid contribution 0.280 1.270 0.058 1.301 sum 0.778 -14.533 -5.036 15.401 Atomic orbital electron populations 1.21477 0.79174 1.00294 1.01256 1.43894 1.06858 1.04591 1.63317 1.19618 0.99078 0.85977 1.42392 0.91450 1.26030 0.97020 1.02671 0.94638 1.70067 1.17860 1.30238 1.35457 0.84977 0.78269 0.77494 0.78195 1.20097 1.18901 1.20148 1.20982 0.87945 0.86021 0.81984 1.90499 1.16265 1.88008 1.56880 1.20492 0.96874 0.88543 1.05786 1.19420 0.99823 0.96380 0.93557 1.20900 0.96293 0.94875 0.98287 1.20370 1.00161 0.99572 0.96331 1.19748 0.91316 0.90532 0.95024 1.21064 1.01579 1.00123 0.95827 1.20275 0.96046 0.94476 0.98081 1.21881 1.00882 0.94962 0.96586 1.24122 1.04419 0.96154 0.77852 1.86754 1.54080 1.48562 1.34640 0.93508 0.93043 0.90907 0.91768 0.86815 0.87339 0.84680 0.84193 0.85186 0.89065 0.86771 0.88860 0.85190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.25 8.52 127.77 1.09 6.34 16 2 N -0.47 -24.32 3.02 -658.88 -1.99 -26.31 16 3 C -0.34 -19.85 9.29 84.04 0.78 -19.07 16 4 H 0.07 4.22 7.41 -2.91 -0.02 4.19 16 5 C 0.00 -0.11 5.11 84.93 0.43 0.32 16 6 N -0.90 -47.75 10.62 21.66 0.23 -47.52 16 7 Si 0.99 43.13 29.57 68.60 2.03 45.16 16 8 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 9 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 10 H -0.28 -11.76 7.11 99.48 0.71 -11.06 16 11 C 0.44 21.74 7.62 87.66 0.67 22.41 16 12 O -0.63 -36.64 15.73 -3.07 -0.05 -36.69 16 13 C -0.08 -2.73 4.36 29.10 0.13 -2.61 16 14 C -0.09 -3.19 4.38 -19.83 -0.09 -3.27 16 15 C -0.09 -2.85 9.68 22.21 0.21 -2.64 16 16 C -0.15 -4.56 10.06 22.45 0.23 -4.34 16 17 C 0.08 2.44 7.04 22.70 0.16 2.60 16 18 C -0.19 -5.46 6.27 -19.52 -0.12 -5.58 16 19 C -0.07 -2.29 9.69 22.16 0.21 -2.07 16 20 C -0.11 -2.12 7.11 30.73 0.22 -1.90 16 21 C 0.05 0.85 8.01 72.56 0.58 1.43 16 22 O -0.33 -8.95 11.10 -95.04 -1.05 -10.01 16 23 H 0.05 2.11 7.54 -2.39 -0.02 2.09 16 24 H 0.05 2.37 7.06 -2.39 -0.02 2.36 16 25 H 0.07 2.43 6.36 -2.38 -0.02 2.41 16 26 H 0.27 13.55 8.31 -92.71 -0.77 12.78 16 27 H 0.11 3.33 7.35 -2.39 -0.02 3.32 16 28 H 0.11 3.39 8.05 -2.39 -0.02 3.37 16 29 H 0.14 4.15 8.06 -2.91 -0.02 4.12 16 30 H 0.14 3.73 8.06 -2.91 -0.02 3.71 16 31 H 0.13 3.80 8.06 -2.91 -0.02 3.77 16 32 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.13 1.52 8.14 -2.39 -0.02 1.50 16 Total: -1.00 -72.98 297.33 4.77 -68.21 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: 1.09 Total: 15.53 kcal Atomic # 6 Polarization: -12.89 SS G_CDS: 4.50 Total: -8.38 kcal Atomic # 7 Polarization: -72.07 SS G_CDS: -1.76 Total: -73.83 kcal Atomic # 8 Polarization: -45.59 SS G_CDS: -1.10 Total: -46.69 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Total: -72.98 4.77 -68.21 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299542804.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.040 kcal (2) G-P(sol) polarization free energy of solvation -72.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds