Wall clock time and date at job start Mon Mar 30 2020 00:25:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 115.55065 * 2 1 4 4 C 1.53004 * 117.52038 * 145.69954 * 2 1 3 5 5 C 1.52994 * 60.00083 * 107.48463 * 4 2 1 6 6 H 1.08998 * 117.52402 * 107.48479 * 5 4 2 7 7 C 1.53002 * 117.49840 * 252.51607 * 5 4 2 8 8 N 1.46501 * 109.46902 * 243.62630 * 7 5 4 9 9 S 1.65601 * 120.00164 * 164.99813 * 8 7 5 10 10 O 1.42096 * 104.27550 * 308.92655 * 9 8 7 11 11 O 1.42097 * 104.27967 * 181.06499 * 9 8 7 12 12 C 1.81409 * 104.44942 * 64.99540 * 9 8 7 13 13 C 1.52999 * 109.46814 * 180.02562 * 12 9 8 14 14 C 1.53006 * 109.46623 * 179.97438 * 13 12 9 15 15 C 1.50699 * 109.46866 * 179.97438 * 14 13 12 16 16 H 1.08003 * 119.99962 * 359.97438 * 15 14 13 17 17 C 1.37874 * 120.00270 * 180.02562 * 15 14 13 18 18 N 1.31522 * 119.99834 * 359.97438 * 17 15 14 19 19 Si 1.86793 * 120.00496 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47325 * 59.99531 * 19 17 15 21 21 H 1.48496 * 109.47425 * 179.97438 * 19 17 15 22 22 H 1.48505 * 109.47183 * 299.99726 * 19 17 15 23 23 H 1.08998 * 109.46631 * 205.67323 * 1 2 3 24 24 H 1.09002 * 109.47058 * 325.67042 * 1 2 3 25 25 H 1.08997 * 109.46817 * 85.67279 * 1 2 3 26 26 H 1.09002 * 117.49470 * 359.97438 * 4 2 1 27 27 H 1.09004 * 117.49941 * 214.97705 * 4 2 1 28 28 H 1.08991 * 109.47647 * 123.62099 * 7 5 4 29 29 H 1.09008 * 109.47042 * 3.61583 * 7 5 4 30 30 H 0.97001 * 120.00296 * 344.98997 * 8 7 5 31 31 H 1.09000 * 109.47067 * 60.00006 * 12 9 8 32 32 H 1.09001 * 109.46593 * 300.00012 * 12 9 8 33 33 H 1.09000 * 109.47486 * 60.00033 * 13 12 9 34 34 H 1.09001 * 109.47362 * 299.99310 * 13 12 9 35 35 H 1.08993 * 109.46955 * 300.00075 * 14 13 12 36 36 H 1.09000 * 109.47050 * 59.99904 * 14 13 12 37 37 H 0.96992 * 120.00032 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2370 -1.1209 0.7647 5 6 2.2366 -1.1207 -0.7653 6 1 3.1712 -0.8746 -1.2692 7 6 1.3589 -2.1560 -1.4716 8 7 2.2059 -3.0703 -2.2417 9 16 1.5853 -4.4994 -2.8028 10 8 0.9887 -5.0954 -1.6592 11 8 2.6782 -5.1196 -3.4663 12 6 0.3141 -4.0026 -3.9980 13 6 -0.3414 -5.2503 -4.5934 14 6 -1.4139 -4.8312 -5.6009 15 6 -2.0592 -6.0601 -6.1878 16 1 -1.7363 -7.0418 -5.8739 17 6 -3.0611 -5.9313 -7.1262 18 7 -3.4540 -4.7359 -7.5088 19 14 -3.8615 -7.4545 -7.8532 20 1 -4.4873 -8.2510 -6.7674 21 1 -4.9023 -7.0479 -8.8312 22 1 -2.8313 -8.2756 -8.5388 23 1 -0.3632 -0.9262 0.4452 24 1 -0.3633 0.8487 0.5796 25 1 -0.3633 0.0775 -1.0247 26 1 1.6120 -1.8584 1.2683 27 1 3.1721 -0.8749 1.2678 28 1 0.6674 -1.6482 -2.1438 29 1 0.7951 -2.7213 -0.7295 30 1 3.1302 -2.8385 -2.4230 31 1 0.7734 -3.4176 -4.7948 32 1 -0.4421 -3.4003 -3.4946 33 1 -0.8007 -5.8349 -3.7963 34 1 0.4147 -5.8530 -5.0966 35 1 -2.1699 -4.2288 -5.0973 36 1 -0.9550 -4.2464 -6.3980 37 1 -4.1590 -4.6452 -8.1687 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331744095.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:25:11 Heat of formation + Delta-G solvation = -74.801564 kcal Electronic energy + Delta-G solvation = -17524.338650 eV Core-core repulsion = 14621.769718 eV Total energy + Delta-G solvation = -2902.568932 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 261.119 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -38.67412 -36.86544 -35.74519 -34.66632 -34.51327 -32.18423 -28.82582 -27.80440 -26.46034 -23.72296 -21.88784 -20.71121 -20.07864 -19.11866 -17.36139 -16.79754 -16.52053 -15.77613 -15.63444 -14.92419 -14.50114 -14.32003 -14.09087 -13.81635 -13.27485 -12.59734 -12.52917 -12.27873 -12.14003 -11.93979 -11.81017 -11.76648 -11.74097 -11.40335 -11.23192 -10.89499 -10.87041 -10.53996 -10.37031 -10.11930 -9.94618 -9.59873 -9.30760 -9.07704 -8.40331 -6.05563 -4.08700 0.47762 2.84338 3.32394 3.36196 3.39465 3.45373 3.94860 4.29374 4.41147 4.42696 4.55157 4.58060 4.88097 5.02445 5.10741 5.19622 5.22542 5.30877 5.42540 5.51182 5.55436 5.56658 5.71758 5.81567 5.89065 5.96745 6.03074 6.27196 6.45173 6.86926 6.92501 7.56727 7.66890 7.92366 8.32900 8.97331 9.55981 11.05655 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.028436 B = 0.004018 C = 0.003674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.426041 B = 6966.455047 C = 7618.409518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.147 4.147 3 H 0.105 0.895 4 C -0.175 4.175 5 C -0.158 4.158 6 H 0.110 0.890 7 C 0.144 3.856 8 N -1.123 6.123 9 S 2.602 3.398 10 O -0.963 6.963 11 O -0.964 6.964 12 C -0.609 4.609 13 C -0.106 4.106 14 C 0.031 3.969 15 C -0.527 4.527 16 H 0.058 0.942 17 C 0.058 3.942 18 N -0.896 5.896 19 Si 0.895 3.105 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.276 1.276 23 H 0.060 0.940 24 H 0.061 0.939 25 H 0.064 0.936 26 H 0.099 0.901 27 H 0.094 0.906 28 H 0.070 0.930 29 H 0.081 0.919 30 H 0.414 0.586 31 H 0.129 0.871 32 H 0.126 0.874 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.020 0.980 36 H 0.020 0.980 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.467 10.635 13.885 20.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.165 4.165 3 H 0.123 0.877 4 C -0.212 4.212 5 C -0.178 4.178 6 H 0.128 0.872 7 C 0.018 3.982 8 N -0.881 5.881 9 S 2.697 3.303 10 O -0.953 6.953 11 O -0.954 6.954 12 C -0.741 4.741 13 C -0.146 4.146 14 C -0.008 4.008 15 C -0.565 4.565 16 H 0.076 0.924 17 C -0.144 4.144 18 N -0.535 5.535 19 Si 0.723 3.277 20 H -0.201 1.201 21 H -0.213 1.213 22 H -0.201 1.201 23 H 0.079 0.921 24 H 0.080 0.920 25 H 0.083 0.917 26 H 0.117 0.883 27 H 0.112 0.888 28 H 0.088 0.912 29 H 0.100 0.900 30 H 0.248 0.752 31 H 0.147 0.853 32 H 0.144 0.856 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.039 0.961 36 H 0.039 0.961 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 10.439 9.815 14.112 20.111 hybrid contribution -0.371 0.000 -0.897 0.970 sum 10.068 9.815 13.215 19.296 Atomic orbital electron populations 1.21428 0.92534 1.02401 1.02411 1.22398 0.95712 0.94314 1.04124 0.87663 1.23249 1.02697 1.01589 0.93670 1.22501 1.01286 0.99607 0.94359 0.87150 1.20864 0.92137 0.90432 0.94756 1.55690 1.22485 1.40282 1.69671 1.05256 0.75948 0.73213 0.75844 1.93562 1.79463 1.74405 1.47863 1.93576 1.51259 1.73527 1.77076 1.30546 1.16740 1.10620 1.16165 1.21505 1.00290 0.92095 1.00672 1.19061 0.92002 0.97008 0.92703 1.21222 1.19178 0.92915 1.23228 0.92411 1.25017 0.96771 0.96055 0.96508 1.69948 1.29623 1.21946 1.31953 0.86607 0.79067 0.83104 0.78958 1.20116 1.21250 1.20115 0.92065 0.91982 0.91677 0.88280 0.88768 0.91168 0.90042 0.75198 0.85266 0.85564 0.91550 0.91553 0.96122 0.96121 0.92844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.94 9.19 37.16 0.34 -0.60 16 2 C -0.15 -1.07 6.41 -90.62 -0.58 -1.65 16 3 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 4 C -0.18 -1.35 9.82 -26.73 -0.26 -1.61 16 5 C -0.16 -1.28 5.90 -90.62 -0.53 -1.81 16 6 H 0.11 0.79 7.98 -51.93 -0.41 0.37 16 7 C 0.14 1.39 5.49 -4.04 -0.02 1.37 16 8 N -1.12 -12.07 5.89 -10.61 -0.06 -12.13 16 9 S 2.60 38.14 5.46 -107.50 -0.59 37.55 16 10 O -0.96 -16.98 17.50 -57.54 -1.01 -17.99 16 11 O -0.96 -17.01 18.08 -57.54 -1.04 -18.05 16 12 C -0.61 -9.30 6.07 37.16 0.23 -9.08 16 13 C -0.11 -2.15 5.16 -26.73 -0.14 -2.29 16 14 C 0.03 0.78 4.97 -27.88 -0.14 0.64 16 15 C -0.53 -14.88 9.11 -34.44 -0.31 -15.19 16 16 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 17 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 18 N -0.90 -26.58 13.29 55.43 0.74 -25.85 16 19 Si 0.90 21.60 29.54 -169.99 -5.02 16.58 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 21 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 23 H 0.06 0.45 7.90 -51.93 -0.41 0.04 16 24 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.06 0.47 7.83 -51.93 -0.41 0.06 16 26 H 0.10 0.80 7.94 -51.93 -0.41 0.39 16 27 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.07 0.59 7.77 -51.93 -0.40 0.19 16 29 H 0.08 0.84 7.43 -51.92 -0.39 0.46 16 30 H 0.41 3.68 8.51 -34.47 -0.29 3.38 16 31 H 0.13 1.77 8.14 -51.92 -0.42 1.35 16 32 H 0.13 1.70 8.14 -51.92 -0.42 1.28 16 33 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 34 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 35 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 323.34 15.07 4.87 4.87 Total: -1.00 -34.55 323.34 -9.70 -44.25 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: -6.07 Total: -0.57 kcal Atomic # 6 Polarization: -27.15 SS G_CDS: -1.52 Total: -28.67 kcal Atomic # 7 Polarization: -38.66 SS G_CDS: 0.67 Total: -37.98 kcal Atomic # 8 Polarization: -33.99 SS G_CDS: -2.05 Total: -36.04 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 16 Polarization: 38.14 SS G_CDS: -0.59 Total: 37.55 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -34.55 -9.70 -44.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331744095.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.552 kcal (2) G-P(sol) polarization free energy of solvation -34.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds