Wall clock time and date at job start Mon Mar 30 2020 00:11:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50700 * 119.99911 * 2 1 4 4 O 1.42902 * 109.46747 * 135.00113 * 3 2 1 5 5 C 1.42895 * 114.00084 * 179.97438 * 4 3 2 6 6 C 1.50692 * 109.47514 * 180.02562 * 5 4 3 7 7 O 1.21281 * 119.99957 * 354.93703 * 6 5 4 8 8 N 1.34781 * 120.00252 * 174.94023 * 6 5 4 9 9 C 1.37133 * 119.99814 * 5.67183 * 8 6 5 10 10 H 1.07999 * 119.99917 * 55.67589 * 9 8 6 11 11 C 1.38890 * 120.00236 * 235.67268 * 9 8 6 12 12 N 1.31424 * 119.99742 * 9.24774 * 11 9 8 13 13 Si 1.86796 * 120.00216 * 189.25252 * 11 9 8 14 14 H 1.48504 * 109.47020 * 359.97438 * 13 11 9 15 15 H 1.48496 * 109.47459 * 119.99674 * 13 11 9 16 16 H 1.48497 * 109.47202 * 239.99728 * 13 11 9 17 17 C 1.39790 * 119.99988 * 185.67779 * 8 6 5 18 18 C 1.38953 * 120.07931 * 175.18460 * 17 8 6 19 19 C 1.38084 * 119.92569 * 179.97438 * 18 17 8 20 20 C 1.38310 * 120.07408 * 0.02562 * 19 18 17 21 21 C 1.38304 * 120.15602 * 359.97438 * 20 19 18 22 22 C 1.38083 * 120.07997 * 359.97438 * 21 20 19 23 23 H 1.07998 * 120.00555 * 179.97438 * 1 2 3 24 24 H 1.08007 * 119.99994 * 359.97438 * 1 2 3 25 25 H 1.07993 * 119.99801 * 180.02562 * 2 1 3 26 26 H 1.08999 * 109.46823 * 15.00471 * 3 2 1 27 27 H 1.08995 * 109.47412 * 254.99941 * 3 2 1 28 28 H 1.09005 * 109.47144 * 59.99862 * 5 4 3 29 29 H 1.09002 * 109.47323 * 300.00461 * 5 4 3 30 30 H 0.97003 * 119.99822 * 184.98696 * 12 11 9 31 31 H 1.07997 * 120.03747 * 359.70614 * 18 17 8 32 32 H 1.07993 * 119.96221 * 179.97438 * 19 18 17 33 33 H 1.07999 * 119.91770 * 179.97438 * 20 19 18 34 34 H 1.08005 * 119.95986 * 180.02562 * 21 20 19 35 35 H 1.08002 * 120.03628 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1267 1.2412 0.9527 5 6 3.9084 2.4347 1.0321 6 6 4.9947 2.2562 2.0612 7 8 5.0347 1.2465 2.7319 8 7 5.9218 3.2187 2.2365 9 6 5.8109 4.4082 1.5632 10 1 4.9104 4.9977 1.6531 11 6 6.8566 4.8550 0.7657 12 7 7.8727 4.0619 0.5095 13 14 6.8188 6.5831 0.0575 14 1 5.5749 7.2686 0.4911 15 1 7.9984 7.3431 0.5432 16 1 6.8527 6.5112 -1.4254 17 6 6.9964 3.0044 3.1044 18 6 8.0057 3.9535 3.2109 19 6 9.0654 3.7387 4.0697 20 6 9.1233 2.5802 4.8230 21 6 8.1206 1.6334 4.7195 22 6 7.0573 1.8421 3.8635 23 1 -0.5401 -0.9352 -0.0004 24 1 -0.5400 0.9354 0.0004 25 1 1.8499 -0.9353 -0.0004 26 1 1.3855 2.1160 0.2661 27 1 2.4755 1.4868 -0.9926 28 1 3.2690 3.2695 1.3193 29 1 4.3587 2.6395 0.0608 30 1 8.6362 4.3967 0.0135 31 1 7.9635 4.8561 2.6195 32 1 9.8504 4.4758 4.1526 33 1 9.9536 2.4146 5.4935 34 1 8.1688 0.7300 5.3095 35 1 6.2748 1.1020 3.7830 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356662615.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:11:51 Heat of formation + Delta-G solvation = -7.261591 kcal Electronic energy + Delta-G solvation = -19275.985847 eV Core-core repulsion = 16240.901716 eV Total energy + Delta-G solvation = -3035.084130 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 261.115 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.73722 -37.83638 -36.79203 -35.03438 -33.68472 -32.01011 -29.67703 -29.42988 -27.25781 -25.36177 -24.97830 -21.72899 -21.15763 -20.04387 -19.39309 -17.84120 -16.71595 -15.97117 -15.57169 -15.51477 -15.33842 -14.83245 -14.43314 -13.93095 -13.51226 -13.15724 -13.00830 -12.73740 -12.28036 -12.18598 -11.85497 -11.57782 -11.41841 -11.29745 -11.14218 -10.86971 -10.77083 -10.48711 -10.05006 -9.68524 -9.27703 -9.13254 -8.78051 -8.10606 -7.79144 -6.92229 -6.35071 -4.61796 2.18277 2.41860 2.56896 2.97953 3.08106 3.11372 3.61187 3.82979 3.98049 4.68605 4.75985 5.11614 5.16325 5.22656 5.50868 5.56218 5.72883 5.82288 5.88272 5.92307 6.03359 6.09130 6.17009 6.57010 6.67387 6.70916 6.73879 6.90530 7.13653 7.18964 7.46930 7.51572 7.62172 7.69580 7.77424 8.02116 8.42393 8.79210 9.21091 9.57939 10.41718 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.016631 B = 0.006936 C = 0.005058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.210088 B = 4035.731092 C = 5534.094515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.139 4.139 3 C 0.085 3.915 4 O -0.367 6.367 5 C 0.066 3.934 6 C 0.497 3.503 7 O -0.547 6.547 8 N -0.383 5.383 9 C -0.375 4.375 10 H 0.094 0.906 11 C 0.056 3.944 12 N -0.838 5.838 13 Si 0.914 3.086 14 H -0.264 1.264 15 H -0.274 1.274 16 H -0.277 1.277 17 C 0.186 3.814 18 C -0.106 4.106 19 C -0.124 4.124 20 C -0.173 4.173 21 C -0.120 4.120 22 C -0.193 4.193 23 H 0.101 0.899 24 H 0.096 0.904 25 H 0.116 0.884 26 H 0.052 0.948 27 H 0.059 0.941 28 H 0.072 0.928 29 H 0.083 0.917 30 H 0.275 0.725 31 H 0.131 0.869 32 H 0.104 0.896 33 H 0.100 0.900 34 H 0.105 0.895 35 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.050 -0.163 -1.174 6.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.158 4.158 3 C 0.009 3.991 4 O -0.286 6.286 5 C -0.013 4.013 6 C 0.288 3.712 7 O -0.429 6.429 8 N -0.093 5.093 9 C -0.502 4.502 10 H 0.112 0.888 11 C -0.154 4.154 12 N -0.470 5.470 13 Si 0.739 3.261 14 H -0.188 1.188 15 H -0.200 1.200 16 H -0.202 1.202 17 C 0.089 3.911 18 C -0.127 4.127 19 C -0.143 4.143 20 C -0.193 4.193 21 C -0.138 4.138 22 C -0.212 4.212 23 H 0.120 0.880 24 H 0.114 0.886 25 H 0.134 0.866 26 H 0.071 0.929 27 H 0.077 0.923 28 H 0.090 0.910 29 H 0.101 0.899 30 H 0.086 0.914 31 H 0.149 0.851 32 H 0.122 0.878 33 H 0.118 0.882 34 H 0.123 0.877 35 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -5.914 -0.844 -0.974 6.052 hybrid contribution 0.360 1.251 -0.731 1.493 sum -5.554 0.407 -1.705 5.824 Atomic orbital electron populations 1.23765 0.95528 1.01965 1.01554 1.22798 0.95566 0.98512 0.98875 1.21534 0.89216 0.95498 0.92875 1.87973 1.44101 1.36612 1.59882 1.22000 0.92472 0.87029 0.99827 1.20445 0.84190 0.82449 0.84109 1.90200 1.75064 1.29948 1.47714 1.40862 1.19447 1.13573 1.35400 1.19403 1.05894 0.98064 1.26823 0.88808 1.25645 0.96058 0.99311 0.94367 1.70047 1.07035 1.34751 1.35176 0.86071 0.79177 0.81868 0.78979 1.18756 1.19966 1.20223 1.18245 0.89498 0.93901 0.89424 1.21011 0.93055 1.00583 0.98026 1.20768 0.98229 0.97433 0.97843 1.20792 0.99677 0.96108 1.02678 1.20872 0.94918 0.98417 0.99640 1.22816 1.01554 0.99301 0.97572 0.88045 0.88554 0.86579 0.92943 0.92325 0.90964 0.89882 0.91420 0.85099 0.87757 0.88155 0.87665 0.80847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.04 14.31 29.01 0.42 -1.62 16 2 C -0.14 -1.82 9.89 -36.03 -0.36 -2.17 16 3 C 0.09 1.24 6.35 36.01 0.23 1.47 16 4 O -0.37 -7.19 9.86 -55.09 -0.54 -7.73 16 5 C 0.07 1.32 5.24 36.00 0.19 1.51 16 6 C 0.50 12.17 7.64 -10.99 -0.08 12.08 16 7 O -0.55 -14.36 12.90 -14.30 -0.18 -14.54 16 8 N -0.38 -9.70 2.62 -58.98 -0.15 -9.86 16 9 C -0.37 -9.05 7.61 -14.94 -0.11 -9.16 16 10 H 0.09 2.13 7.85 -52.49 -0.41 1.72 16 11 C 0.06 1.34 3.49 -17.48 -0.06 1.28 16 12 N -0.84 -21.46 11.39 55.49 0.63 -20.83 16 13 Si 0.91 18.09 29.57 -169.99 -5.03 13.06 16 14 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 15 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 16 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 17 C 0.19 4.74 6.05 -83.70 -0.51 4.23 16 18 C -0.11 -2.55 7.87 -39.37 -0.31 -2.86 16 19 C -0.12 -2.63 10.04 -39.61 -0.40 -3.03 16 20 C -0.17 -3.49 10.04 -39.53 -0.40 -3.89 16 21 C -0.12 -2.54 10.04 -39.61 -0.40 -2.94 16 22 C -0.19 -4.70 9.06 -39.37 -0.36 -5.06 16 23 H 0.10 0.91 8.06 -52.49 -0.42 0.48 16 24 H 0.10 0.92 7.90 -52.48 -0.41 0.51 16 25 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 26 H 0.05 0.68 7.86 -51.93 -0.41 0.27 16 27 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 29 H 0.08 1.64 8.05 -51.93 -0.42 1.22 16 30 H 0.28 6.63 8.32 -40.82 -0.34 6.29 16 31 H 0.13 3.23 5.15 -52.49 -0.27 2.96 16 32 H 0.10 1.92 8.06 -52.49 -0.42 1.50 16 33 H 0.10 1.70 8.06 -52.49 -0.42 1.27 16 34 H 0.11 1.93 8.06 -52.48 -0.42 1.50 16 35 H 0.18 4.43 4.50 -56.37 -0.25 4.18 16 LS Contribution 301.50 15.07 4.54 4.54 Total: -1.00 -28.91 301.50 -7.15 -36.06 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: -4.27 Total: 9.44 kcal Atomic # 6 Polarization: -8.01 SS G_CDS: -2.15 Total: -10.15 kcal Atomic # 7 Polarization: -31.16 SS G_CDS: 0.48 Total: -30.68 kcal Atomic # 8 Polarization: -21.54 SS G_CDS: -0.73 Total: -22.27 kcal Atomic # 14 Polarization: 18.09 SS G_CDS: -5.03 Total: 13.06 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -28.91 -7.15 -36.06 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356662615.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.801 kcal (2) G-P(sol) polarization free energy of solvation -28.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds