Wall clock time and date at job start Mon Mar 30 2020 00:11:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50700 * 119.99911 * 2 1 4 4 O 1.42902 * 109.46747 * 135.00113 * 3 2 1 5 5 C 1.42895 * 114.00084 * 179.97438 * 4 3 2 6 6 C 1.50692 * 109.47514 * 180.02562 * 5 4 3 7 7 O 1.21281 * 119.99957 * 354.93703 * 6 5 4 8 8 N 1.34781 * 120.00252 * 174.94023 * 6 5 4 9 9 C 1.37133 * 119.99814 * 5.67183 * 8 6 5 10 10 H 1.07999 * 119.99917 * 55.67589 * 9 8 6 11 11 C 1.38890 * 120.00236 * 235.67268 * 9 8 6 12 12 N 1.31424 * 119.99742 * 9.24774 * 11 9 8 13 13 Si 1.86796 * 120.00216 * 189.25252 * 11 9 8 14 14 H 1.48504 * 109.47020 * 359.97438 * 13 11 9 15 15 H 1.48496 * 109.47459 * 119.99674 * 13 11 9 16 16 H 1.48497 * 109.47202 * 239.99728 * 13 11 9 17 17 C 1.39790 * 119.99988 * 185.67779 * 8 6 5 18 18 C 1.38953 * 120.07931 * 175.18460 * 17 8 6 19 19 C 1.38084 * 119.92569 * 179.97438 * 18 17 8 20 20 C 1.38310 * 120.07408 * 0.02562 * 19 18 17 21 21 C 1.38304 * 120.15602 * 359.97438 * 20 19 18 22 22 C 1.38083 * 120.07997 * 359.97438 * 21 20 19 23 23 H 1.07998 * 120.00555 * 179.97438 * 1 2 3 24 24 H 1.08007 * 119.99994 * 359.97438 * 1 2 3 25 25 H 1.07993 * 119.99801 * 180.02562 * 2 1 3 26 26 H 1.08999 * 109.46823 * 15.00471 * 3 2 1 27 27 H 1.08995 * 109.47412 * 254.99941 * 3 2 1 28 28 H 1.09005 * 109.47144 * 59.99862 * 5 4 3 29 29 H 1.09002 * 109.47323 * 300.00461 * 5 4 3 30 30 H 0.97003 * 119.99822 * 184.98696 * 12 11 9 31 31 H 1.07997 * 120.03747 * 359.70614 * 18 17 8 32 32 H 1.07993 * 119.96221 * 179.97438 * 19 18 17 33 33 H 1.07999 * 119.91770 * 179.97438 * 20 19 18 34 34 H 1.08005 * 119.95986 * 180.02562 * 21 20 19 35 35 H 1.08002 * 120.03628 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1267 1.2412 0.9527 5 6 3.9084 2.4347 1.0321 6 6 4.9947 2.2562 2.0612 7 8 5.0347 1.2465 2.7319 8 7 5.9218 3.2187 2.2365 9 6 5.8109 4.4082 1.5632 10 1 4.9104 4.9977 1.6531 11 6 6.8566 4.8550 0.7657 12 7 7.8727 4.0619 0.5095 13 14 6.8188 6.5831 0.0575 14 1 5.5749 7.2686 0.4911 15 1 7.9984 7.3431 0.5432 16 1 6.8527 6.5112 -1.4254 17 6 6.9964 3.0044 3.1044 18 6 8.0057 3.9535 3.2109 19 6 9.0654 3.7387 4.0697 20 6 9.1233 2.5802 4.8230 21 6 8.1206 1.6334 4.7195 22 6 7.0573 1.8421 3.8635 23 1 -0.5401 -0.9352 -0.0004 24 1 -0.5400 0.9354 0.0004 25 1 1.8499 -0.9353 -0.0004 26 1 1.3855 2.1160 0.2661 27 1 2.4755 1.4868 -0.9926 28 1 3.2690 3.2695 1.3193 29 1 4.3587 2.6395 0.0608 30 1 8.6362 4.3967 0.0135 31 1 7.9635 4.8561 2.6195 32 1 9.8504 4.4758 4.1526 33 1 9.9536 2.4146 5.4935 34 1 8.1688 0.7300 5.3095 35 1 6.2748 1.1020 3.7830 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356662615.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:11:50 Heat of formation + Delta-G solvation = -22.793762 kcal Electronic energy + Delta-G solvation = -19276.659372 eV Core-core repulsion = 16240.901716 eV Total energy + Delta-G solvation = -3035.757656 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 261.115 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.53790 -39.38304 -38.39395 -36.86097 -34.74691 -33.85829 -31.40882 -31.13372 -28.77776 -27.08385 -26.34597 -23.47242 -22.88708 -21.44756 -20.80374 -19.59836 -18.29653 -17.56478 -17.12864 -17.10278 -16.95294 -16.37593 -15.98950 -15.50973 -15.05647 -14.74427 -14.65794 -14.24806 -13.92574 -13.65864 -13.42740 -13.13048 -13.00433 -12.92157 -12.83688 -12.44881 -12.05460 -11.86809 -11.74827 -11.07487 -10.92591 -10.57623 -10.25811 -9.93874 -9.54665 -8.74010 -8.16165 -6.49441 0.66000 0.80192 1.22368 1.41356 1.46540 1.59366 1.89094 2.18500 2.40844 2.89780 3.29713 3.35488 3.95455 4.12591 4.18392 4.27531 4.31704 4.37438 4.42020 4.50660 4.59631 4.62749 4.93210 4.98606 4.99649 5.14609 5.34490 5.41309 5.65909 5.71457 5.78591 5.87468 5.87999 6.01077 6.17292 6.22961 6.61153 6.96050 7.37085 7.74745 8.62829 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.016631 B = 0.006936 C = 0.005058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.210088 B = 4035.731092 C = 5534.094515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.175 4.175 3 C 0.079 3.921 4 O -0.396 6.396 5 C 0.080 3.920 6 C 0.476 3.524 7 O -0.577 6.577 8 N -0.394 5.394 9 C -0.388 4.388 10 H 0.105 0.895 11 C 0.022 3.978 12 N -0.877 5.877 13 Si 0.983 3.017 14 H -0.251 1.251 15 H -0.274 1.274 16 H -0.276 1.276 17 C 0.152 3.848 18 C -0.125 4.125 19 C -0.124 4.124 20 C -0.163 4.163 21 C -0.119 4.119 22 C -0.220 4.220 23 H 0.122 0.878 24 H 0.112 0.888 25 H 0.107 0.893 26 H 0.071 0.929 27 H 0.067 0.933 28 H 0.095 0.905 29 H 0.083 0.917 30 H 0.276 0.724 31 H 0.119 0.881 32 H 0.135 0.865 33 H 0.144 0.856 34 H 0.135 0.865 35 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.265 0.888 -1.020 6.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.194 4.194 3 C 0.004 3.996 4 O -0.315 6.315 5 C 0.001 3.999 6 C 0.269 3.731 7 O -0.462 6.462 8 N -0.103 5.103 9 C -0.514 4.514 10 H 0.122 0.878 11 C -0.184 4.184 12 N -0.509 5.509 13 Si 0.805 3.195 14 H -0.174 1.174 15 H -0.199 1.199 16 H -0.201 1.201 17 C 0.056 3.944 18 C -0.146 4.146 19 C -0.142 4.142 20 C -0.182 4.182 21 C -0.138 4.138 22 C -0.240 4.240 23 H 0.140 0.860 24 H 0.130 0.870 25 H 0.125 0.875 26 H 0.090 0.910 27 H 0.085 0.915 28 H 0.112 0.888 29 H 0.101 0.899 30 H 0.086 0.914 31 H 0.137 0.863 32 H 0.153 0.847 33 H 0.162 0.838 34 H 0.153 0.847 35 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -6.146 0.211 -0.819 6.203 hybrid contribution 0.403 0.849 -0.723 1.185 sum -5.743 1.060 -1.541 6.040 Atomic orbital electron populations 1.24056 0.94572 1.03678 0.97525 1.22746 0.96487 0.97512 1.02611 1.21820 0.88380 0.97186 0.92251 1.87940 1.45419 1.36523 1.61612 1.21818 0.91846 0.88046 0.98224 1.21265 0.85066 0.82064 0.84725 1.90176 1.76023 1.30969 1.49024 1.41133 1.19594 1.14063 1.35558 1.19771 1.06643 0.98019 1.26988 0.87792 1.26427 0.95176 1.02776 0.94052 1.70166 1.07826 1.36726 1.36200 0.85038 0.79486 0.77081 0.77918 1.17440 1.19911 1.20124 1.18634 0.90420 0.94919 0.90434 1.21065 0.94076 1.00191 0.99220 1.21180 0.97834 0.98558 0.96674 1.21233 1.00062 0.94760 1.02130 1.21240 0.94017 0.99810 0.98726 1.22817 1.02766 0.99131 0.99269 0.86033 0.87003 0.87520 0.91045 0.91535 0.88777 0.89913 0.91408 0.86275 0.84674 0.83847 0.84710 0.82621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.08 14.31 67.78 0.97 -2.11 16 2 C -0.18 -4.46 9.89 25.65 0.25 -4.21 16 3 C 0.08 2.28 6.35 71.24 0.45 2.73 16 4 O -0.40 -15.82 9.86 -129.99 -1.28 -17.10 16 5 C 0.08 3.27 5.24 71.23 0.37 3.64 16 6 C 0.48 24.27 7.64 87.65 0.67 24.94 16 7 O -0.58 -31.88 12.90 15.96 0.21 -31.67 16 8 N -0.39 -20.59 2.62 -458.91 -1.20 -21.79 16 9 C -0.39 -18.96 7.61 84.02 0.64 -18.32 16 10 H 0.10 4.71 7.85 -2.91 -0.02 4.68 16 11 C 0.02 1.07 3.49 84.91 0.30 1.36 16 12 N -0.88 -45.59 11.39 21.65 0.25 -45.34 16 13 Si 0.98 36.70 29.57 68.60 2.03 38.73 16 14 H -0.25 -8.78 7.11 99.48 0.71 -8.07 16 15 H -0.27 -10.14 7.11 99.48 0.71 -9.43 16 16 H -0.28 -10.20 7.11 99.48 0.71 -9.49 16 17 C 0.15 7.97 6.05 38.22 0.23 8.20 16 18 C -0.12 -6.05 7.87 22.40 0.18 -5.87 16 19 C -0.12 -5.04 10.04 22.25 0.22 -4.82 16 20 C -0.16 -6.12 10.04 22.30 0.22 -5.89 16 21 C -0.12 -4.94 10.04 22.25 0.22 -4.71 16 22 C -0.22 -11.00 9.06 22.41 0.20 -10.80 16 23 H 0.12 1.83 8.06 -2.91 -0.02 1.80 16 24 H 0.11 1.79 7.90 -2.91 -0.02 1.77 16 25 H 0.11 2.85 8.06 -2.91 -0.02 2.83 16 26 H 0.07 1.74 7.86 -2.39 -0.02 1.72 16 27 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 28 H 0.09 3.36 8.14 -2.38 -0.02 3.35 16 29 H 0.08 3.35 8.05 -2.39 -0.02 3.33 16 30 H 0.28 13.48 8.32 -92.71 -0.77 12.71 16 31 H 0.12 5.96 5.15 -2.91 -0.02 5.95 16 32 H 0.14 4.57 8.06 -2.91 -0.02 4.55 16 33 H 0.14 4.16 8.06 -2.91 -0.02 4.13 16 34 H 0.14 4.65 8.06 -2.91 -0.02 4.63 16 35 H 0.16 8.37 4.50 -64.42 -0.29 8.08 16 Total: -1.00 -64.53 301.50 5.74 -58.79 By element: Atomic # 1 Polarization: 33.45 SS G_CDS: 0.80 Total: 34.26 kcal Atomic # 6 Polarization: -20.81 SS G_CDS: 4.94 Total: -15.88 kcal Atomic # 7 Polarization: -66.17 SS G_CDS: -0.96 Total: -67.13 kcal Atomic # 8 Polarization: -47.70 SS G_CDS: -1.08 Total: -48.77 kcal Atomic # 14 Polarization: 36.70 SS G_CDS: 2.03 Total: 38.73 kcal Total: -64.53 5.74 -58.79 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356662615.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.997 kcal (2) G-P(sol) polarization free energy of solvation -64.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds