Wall clock time and date at job start Mon Mar 30 2020 00:21:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 110.53498 * 2 1 4 4 C 1.54883 * 110.48906 * 237.38615 * 2 1 3 5 5 C 1.54885 * 102.75092 * 203.37704 * 4 2 1 6 6 C 1.54261 * 104.19646 * 37.93887 * 5 4 2 7 7 H 1.08999 * 110.08026 * 217.08371 * 6 5 4 8 8 N 1.46503 * 110.02931 * 95.67560 * 6 5 4 9 9 S 1.65603 * 120.00014 * 97.83579 * 8 6 5 10 10 O 1.42099 * 104.27740 * 308.93034 * 9 8 6 11 11 O 1.42099 * 104.27888 * 181.07083 * 9 8 6 12 12 C 1.81402 * 104.44809 * 65.00048 * 9 8 6 13 13 C 1.52999 * 109.47096 * 180.02562 * 12 9 8 14 14 C 1.50702 * 109.47525 * 179.97438 * 13 12 9 15 15 H 1.08002 * 119.99441 * 0.02562 * 14 13 12 16 16 C 1.37871 * 120.00075 * 180.02562 * 14 13 12 17 17 N 1.31514 * 120.00481 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99886 * 179.73007 * 16 14 13 19 19 H 1.48494 * 109.47225 * 180.27306 * 18 16 14 20 20 H 1.48506 * 109.46866 * 300.27330 * 18 16 14 21 21 H 1.48498 * 109.47306 * 60.26614 * 18 16 14 22 22 C 1.53872 * 106.60087 * 336.39266 * 6 5 4 23 23 H 1.09000 * 109.47060 * 297.38932 * 1 2 3 24 24 H 1.08997 * 109.47283 * 57.39009 * 1 2 3 25 25 H 1.09000 * 109.46347 * 177.39012 * 1 2 3 26 26 H 1.08999 * 110.75395 * 321.69072 * 4 2 1 27 27 H 1.09006 * 110.75497 * 84.87701 * 4 2 1 28 28 H 1.09005 * 110.48776 * 279.26390 * 5 4 2 29 29 H 1.09001 * 110.48766 * 156.62027 * 5 4 2 30 30 H 0.96996 * 120.00059 * 277.83468 * 8 6 5 31 31 H 1.08995 * 109.47513 * 60.00205 * 12 9 8 32 32 H 1.09001 * 109.46953 * 299.99879 * 12 9 8 33 33 H 1.09009 * 109.47378 * 59.99923 * 13 12 9 34 34 H 1.08998 * 109.47458 * 300.00384 * 13 12 9 35 35 H 0.97005 * 119.99656 * 359.72741 * 17 16 14 36 36 H 1.09004 * 110.03269 * 119.27930 * 22 6 5 37 37 H 1.08999 * 110.03395 * 240.66523 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9124 1.0208 0.0000 4 6 2.0722 -0.7820 -1.2221 5 6 3.4907 -1.1979 -0.7599 6 6 3.3167 -1.5403 0.7341 7 1 4.1927 -1.2175 1.2966 8 7 3.1187 -2.9826 0.8985 9 16 4.3971 -3.9525 1.3077 10 8 5.4079 -3.6151 0.3676 11 8 3.8445 -5.2609 1.3514 12 6 4.8670 -3.4040 2.9717 13 6 6.0531 -4.2342 3.4664 14 6 6.4440 -3.7782 4.8486 15 1 5.9003 -2.9767 5.3266 16 6 7.4954 -4.3842 5.5028 17 7 8.1571 -5.3606 4.9210 18 14 7.9846 -3.8139 7.2131 19 1 9.1397 -4.6157 7.6907 20 1 8.3635 -2.3787 7.1667 21 1 6.8395 -3.9937 8.1413 22 6 2.0700 -0.7787 1.2173 23 1 -0.3633 0.4728 0.9125 24 1 -0.3634 0.5538 -0.8656 25 1 -0.3632 -1.0266 -0.0468 26 1 1.4582 -1.6601 -1.4221 27 1 2.1221 -0.1390 -2.1009 28 1 4.1898 -0.3706 -0.8827 29 1 3.8317 -2.0721 -1.3145 30 1 2.2389 -3.3694 0.7678 31 1 4.0234 -3.5354 3.6493 32 1 5.1482 -2.3513 2.9414 33 1 6.8967 -4.1024 2.7887 34 1 5.7725 -5.2870 3.4965 35 1 7.9028 -5.6570 4.0330 36 1 1.3177 -1.4822 1.5742 37 1 2.3411 -0.0862 2.0142 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000444217658.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:21:22 Heat of formation + Delta-G solvation = -108.588932 kcal Electronic energy + Delta-G solvation = -18149.384403 eV Core-core repulsion = 15245.350341 eV Total energy + Delta-G solvation = -2904.034062 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 261.119 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -38.97254 -36.62080 -35.50450 -34.25325 -33.98226 -31.03054 -30.34196 -28.21477 -25.07506 -24.85922 -21.99984 -20.73870 -20.18881 -18.92558 -17.62130 -16.73108 -16.35565 -15.92826 -15.57717 -14.95277 -14.10408 -13.79434 -13.77939 -13.51492 -13.31008 -12.86996 -12.76512 -12.25195 -12.03790 -11.99654 -11.66639 -11.58461 -11.16842 -11.06625 -11.03928 -10.98965 -10.72685 -10.67961 -10.52694 -10.47948 -10.32009 -10.07344 -9.37894 -8.65533 -8.46098 -6.47605 -4.20389 0.72757 3.08873 3.38617 3.40487 3.59741 4.15280 4.35433 4.39916 4.47460 4.55680 4.71116 5.04963 5.13641 5.17974 5.28217 5.30607 5.38115 5.40744 5.42989 5.55648 5.63452 5.65336 5.71608 5.78619 5.92638 5.93238 6.15227 6.22710 6.28841 6.35831 6.96772 7.04809 7.12170 7.96464 8.29580 8.72659 9.52043 10.92277 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.029903 B = 0.004789 C = 0.004401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.123104 B = 5845.608769 C = 6360.461746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.099 4.099 3 H 0.076 0.924 4 C -0.120 4.120 5 C -0.139 4.139 6 C 0.148 3.852 7 H 0.087 0.913 8 N -1.119 6.119 9 S 2.591 3.409 10 O -0.965 6.965 11 O -0.970 6.970 12 C -0.584 4.584 13 C 0.015 3.985 14 C -0.600 4.600 15 H 0.055 0.945 16 C 0.016 3.984 17 N -0.905 5.905 18 Si 1.073 2.927 19 H -0.280 1.280 20 H -0.287 1.287 21 H -0.287 1.287 22 C -0.128 4.128 23 H 0.054 0.946 24 H 0.053 0.947 25 H 0.055 0.945 26 H 0.067 0.933 27 H 0.065 0.935 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.411 0.589 31 H 0.122 0.878 32 H 0.119 0.881 33 H 0.024 0.976 34 H 0.024 0.976 35 H 0.270 0.730 36 H 0.076 0.924 37 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.319 11.390 -9.245 20.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.117 4.117 3 H 0.094 0.906 4 C -0.158 4.158 5 C -0.179 4.179 6 C 0.040 3.960 7 H 0.105 0.895 8 N -0.876 5.876 9 S 2.688 3.312 10 O -0.955 6.955 11 O -0.960 6.960 12 C -0.717 4.717 13 C -0.024 4.024 14 C -0.640 4.640 15 H 0.073 0.927 16 C -0.189 4.189 17 N -0.541 5.541 18 Si 0.901 3.099 19 H -0.205 1.205 20 H -0.213 1.213 21 H -0.213 1.213 22 C -0.168 4.168 23 H 0.073 0.927 24 H 0.072 0.928 25 H 0.074 0.926 26 H 0.085 0.915 27 H 0.084 0.916 28 H 0.093 0.907 29 H 0.098 0.902 30 H 0.245 0.755 31 H 0.140 0.860 32 H 0.137 0.863 33 H 0.043 0.957 34 H 0.042 0.958 35 H 0.081 0.919 36 H 0.095 0.905 37 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -12.704 10.510 -8.575 18.584 hybrid contribution -1.645 0.598 -0.745 1.903 sum -14.349 11.108 -9.320 20.400 Atomic orbital electron populations 1.21806 0.95009 1.01830 1.01517 1.21993 0.95475 0.99355 0.94898 0.90588 1.22580 0.96289 0.99647 0.97239 1.22867 0.97054 1.02279 0.95668 1.21348 0.98501 0.79575 0.96538 0.89483 1.55925 1.26860 1.17601 1.87169 1.05586 0.73556 0.73771 0.78264 1.93550 1.58723 1.84085 1.59129 1.93552 1.77569 1.36772 1.88113 1.30343 1.10391 1.11259 1.19748 1.19067 0.90054 0.94315 0.99006 1.21840 1.19397 1.22301 1.00431 0.92706 1.25972 0.93342 0.94403 1.05165 1.70785 1.40562 1.26094 1.16611 0.83482 0.76473 0.75790 0.74185 1.20538 1.21294 1.21304 1.22613 0.96943 0.99198 0.97997 0.92710 0.92785 0.92597 0.91465 0.91640 0.90662 0.90217 0.75507 0.86003 0.86307 0.95749 0.95792 0.91927 0.90504 0.90762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.02 9.12 37.16 0.34 -0.68 16 2 C -0.10 -0.79 3.46 -88.96 -0.31 -1.09 16 3 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 4 C -0.12 -1.05 6.33 -24.74 -0.16 -1.21 16 5 C -0.14 -1.52 6.54 -25.08 -0.16 -1.68 16 6 C 0.15 1.68 3.34 -66.81 -0.22 1.45 16 7 H 0.09 0.99 7.22 -51.93 -0.37 0.61 16 8 N -1.12 -14.28 5.29 -3.94 -0.02 -14.30 16 9 S 2.59 45.83 5.38 -107.50 -0.58 45.26 16 10 O -0.97 -19.72 17.82 -57.54 -1.03 -20.74 16 11 O -0.97 -20.08 18.08 -57.54 -1.04 -21.12 16 12 C -0.58 -11.23 5.91 37.16 0.22 -11.01 16 13 C 0.01 0.37 4.29 -27.88 -0.12 0.25 16 14 C -0.60 -16.87 9.11 -34.44 -0.31 -17.18 16 15 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 16 C 0.02 0.46 5.46 -17.82 -0.10 0.36 16 17 N -0.91 -27.78 13.65 55.43 0.76 -27.02 16 18 Si 1.07 24.85 29.90 -169.99 -5.08 19.77 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 20 H -0.29 -6.28 7.11 56.52 0.40 -5.88 16 21 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 22 C -0.13 -1.15 6.14 -25.61 -0.16 -1.31 16 23 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 24 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 25 H 0.05 0.40 8.12 -51.93 -0.42 -0.03 16 26 H 0.07 0.59 8.04 -51.93 -0.42 0.17 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 29 H 0.08 1.01 8.04 -51.93 -0.42 0.59 16 30 H 0.41 4.44 8.63 -34.47 -0.30 4.14 16 31 H 0.12 2.14 8.14 -51.93 -0.42 1.72 16 32 H 0.12 2.05 7.48 -51.92 -0.39 1.66 16 33 H 0.02 0.65 8.01 -51.92 -0.42 0.23 16 34 H 0.02 0.64 8.00 -51.93 -0.42 0.22 16 35 H 0.27 8.28 7.22 -40.82 -0.29 7.99 16 36 H 0.08 0.66 7.45 -51.93 -0.39 0.27 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 LS Contribution 314.08 15.07 4.73 4.73 Total: -1.00 -34.88 314.08 -9.23 -44.11 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: -5.99 Total: 1.41 kcal Atomic # 6 Polarization: -31.12 SS G_CDS: -0.98 Total: -32.10 kcal Atomic # 7 Polarization: -42.06 SS G_CDS: 0.74 Total: -41.32 kcal Atomic # 8 Polarization: -39.79 SS G_CDS: -2.07 Total: -41.86 kcal Atomic # 14 Polarization: 24.85 SS G_CDS: -5.08 Total: 19.77 kcal Atomic # 16 Polarization: 45.83 SS G_CDS: -0.58 Total: 45.26 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -34.88 -9.23 -44.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000444217658.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.478 kcal (2) G-P(sol) polarization free energy of solvation -34.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds