Wall clock time and date at job start Mon Mar 30 2020 00:21:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 110.53498 * 2 1 4 4 C 1.54883 * 110.48906 * 237.38615 * 2 1 3 5 5 C 1.54885 * 102.75092 * 203.37704 * 4 2 1 6 6 C 1.54261 * 104.19646 * 37.93887 * 5 4 2 7 7 H 1.08999 * 110.08026 * 217.08371 * 6 5 4 8 8 N 1.46503 * 110.02931 * 95.67560 * 6 5 4 9 9 S 1.65603 * 120.00014 * 97.83579 * 8 6 5 10 10 O 1.42099 * 104.27740 * 308.93034 * 9 8 6 11 11 O 1.42099 * 104.27888 * 181.07083 * 9 8 6 12 12 C 1.81402 * 104.44809 * 65.00048 * 9 8 6 13 13 C 1.52999 * 109.47096 * 180.02562 * 12 9 8 14 14 C 1.50702 * 109.47525 * 179.97438 * 13 12 9 15 15 H 1.08002 * 119.99441 * 0.02562 * 14 13 12 16 16 C 1.37871 * 120.00075 * 180.02562 * 14 13 12 17 17 N 1.31514 * 120.00481 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99886 * 179.73007 * 16 14 13 19 19 H 1.48494 * 109.47225 * 180.27306 * 18 16 14 20 20 H 1.48506 * 109.46866 * 300.27330 * 18 16 14 21 21 H 1.48498 * 109.47306 * 60.26614 * 18 16 14 22 22 C 1.53872 * 106.60087 * 336.39266 * 6 5 4 23 23 H 1.09000 * 109.47060 * 297.38932 * 1 2 3 24 24 H 1.08997 * 109.47283 * 57.39009 * 1 2 3 25 25 H 1.09000 * 109.46347 * 177.39012 * 1 2 3 26 26 H 1.08999 * 110.75395 * 321.69072 * 4 2 1 27 27 H 1.09006 * 110.75497 * 84.87701 * 4 2 1 28 28 H 1.09005 * 110.48776 * 279.26390 * 5 4 2 29 29 H 1.09001 * 110.48766 * 156.62027 * 5 4 2 30 30 H 0.96996 * 120.00059 * 277.83468 * 8 6 5 31 31 H 1.08995 * 109.47513 * 60.00205 * 12 9 8 32 32 H 1.09001 * 109.46953 * 299.99879 * 12 9 8 33 33 H 1.09009 * 109.47378 * 59.99923 * 13 12 9 34 34 H 1.08998 * 109.47458 * 300.00384 * 13 12 9 35 35 H 0.97005 * 119.99656 * 359.72741 * 17 16 14 36 36 H 1.09004 * 110.03269 * 119.27930 * 22 6 5 37 37 H 1.08999 * 110.03395 * 240.66523 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9124 1.0208 0.0000 4 6 2.0722 -0.7820 -1.2221 5 6 3.4907 -1.1979 -0.7599 6 6 3.3167 -1.5403 0.7341 7 1 4.1927 -1.2175 1.2966 8 7 3.1187 -2.9826 0.8985 9 16 4.3971 -3.9525 1.3077 10 8 5.4079 -3.6151 0.3676 11 8 3.8445 -5.2609 1.3514 12 6 4.8670 -3.4040 2.9717 13 6 6.0531 -4.2342 3.4664 14 6 6.4440 -3.7782 4.8486 15 1 5.9003 -2.9767 5.3266 16 6 7.4954 -4.3842 5.5028 17 7 8.1571 -5.3606 4.9210 18 14 7.9846 -3.8139 7.2131 19 1 9.1397 -4.6157 7.6907 20 1 8.3635 -2.3787 7.1667 21 1 6.8395 -3.9937 8.1413 22 6 2.0700 -0.7787 1.2173 23 1 -0.3633 0.4728 0.9125 24 1 -0.3634 0.5538 -0.8656 25 1 -0.3632 -1.0266 -0.0468 26 1 1.4582 -1.6601 -1.4221 27 1 2.1221 -0.1390 -2.1009 28 1 4.1898 -0.3706 -0.8827 29 1 3.8317 -2.0721 -1.3145 30 1 2.2389 -3.3694 0.7678 31 1 4.0234 -3.5354 3.6493 32 1 5.1482 -2.3513 2.9414 33 1 6.8967 -4.1024 2.7887 34 1 5.7725 -5.2870 3.4965 35 1 7.9028 -5.6570 4.0330 36 1 1.3177 -1.4822 1.5742 37 1 2.3411 -0.0862 2.0142 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000444217658.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:21:21 Heat of formation + Delta-G solvation = -133.799298 kcal Electronic energy + Delta-G solvation = -18150.477607 eV Core-core repulsion = 15245.350341 eV Total energy + Delta-G solvation = -2905.127266 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 261.119 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.77583 -38.19378 -37.08715 -36.30618 -34.92044 -32.99353 -31.10855 -28.99685 -27.11385 -25.56462 -23.97977 -21.64313 -20.94477 -20.21068 -19.34507 -18.42716 -17.48607 -17.37235 -16.65669 -16.24421 -15.65676 -15.32165 -14.94695 -14.76772 -14.51605 -14.09928 -14.04010 -13.60827 -13.28894 -13.19170 -13.08787 -12.86692 -12.83604 -12.46647 -12.30744 -12.07014 -11.96070 -11.87662 -11.86135 -11.65868 -11.40670 -11.33568 -10.83028 -10.62727 -10.34308 -8.75813 -6.50021 -0.75590 1.53185 1.61841 1.78551 1.81266 2.54491 2.71850 3.08871 3.19193 3.58717 3.64451 3.81590 3.94770 3.98185 4.25645 4.40406 4.47846 4.53217 4.58530 4.62730 4.76375 4.77440 4.97771 5.00198 5.03849 5.06455 5.15893 5.21081 5.36447 5.39207 5.44770 5.60779 5.80459 6.06765 6.12680 6.43784 7.33223 8.63880 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.029903 B = 0.004789 C = 0.004401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.123104 B = 5845.608769 C = 6360.461746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.094 4.094 3 H 0.084 0.916 4 C -0.116 4.116 5 C -0.145 4.145 6 C 0.135 3.865 7 H 0.087 0.913 8 N -1.098 6.098 9 S 2.620 3.380 10 O -0.994 6.994 11 O -1.001 7.001 12 C -0.584 4.584 13 C 0.003 3.997 14 C -0.614 4.614 15 H 0.068 0.932 16 C -0.042 4.042 17 N -0.936 5.936 18 Si 1.123 2.877 19 H -0.285 1.285 20 H -0.264 1.264 21 H -0.265 1.265 22 C -0.125 4.125 23 H 0.059 0.941 24 H 0.060 0.940 25 H 0.053 0.947 26 H 0.066 0.934 27 H 0.076 0.924 28 H 0.082 0.918 29 H 0.057 0.943 30 H 0.424 0.576 31 H 0.142 0.858 32 H 0.141 0.859 33 H 0.004 0.996 34 H 0.002 0.998 35 H 0.254 0.746 36 H 0.083 0.917 37 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.035 13.602 -8.582 22.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.113 4.113 3 H 0.103 0.897 4 C -0.154 4.154 5 C -0.185 4.185 6 C 0.028 3.972 7 H 0.105 0.895 8 N -0.860 5.860 9 S 2.716 3.284 10 O -0.983 6.983 11 O -0.991 6.991 12 C -0.716 4.716 13 C -0.035 4.035 14 C -0.653 4.653 15 H 0.086 0.914 16 C -0.239 4.239 17 N -0.573 5.573 18 Si 0.942 3.058 19 H -0.211 1.211 20 H -0.189 1.189 21 H -0.189 1.189 22 C -0.165 4.165 23 H 0.078 0.922 24 H 0.079 0.921 25 H 0.073 0.927 26 H 0.084 0.916 27 H 0.094 0.906 28 H 0.101 0.899 29 H 0.076 0.924 30 H 0.261 0.739 31 H 0.160 0.840 32 H 0.159 0.841 33 H 0.022 0.978 34 H 0.020 0.980 35 H 0.064 0.936 36 H 0.101 0.899 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -14.447 12.727 -7.923 20.820 hybrid contribution -1.162 -0.052 -1.043 1.563 sum -15.609 12.675 -8.966 22.016 Atomic orbital electron populations 1.21794 0.94121 1.01962 1.02148 1.21986 0.96141 0.99422 0.93734 0.89746 1.22574 0.94728 0.99980 0.98114 1.22900 0.98737 1.01688 0.95149 1.21692 1.00054 0.78312 0.97156 0.89465 1.55446 1.26107 1.18112 1.86292 1.04454 0.73614 0.73155 0.77168 1.93513 1.60649 1.84484 1.59690 1.93502 1.78182 1.39212 1.88254 1.30269 1.08523 1.11404 1.21395 1.18991 0.92016 0.94287 0.98255 1.22331 1.19248 1.22227 1.01457 0.91403 1.27663 0.93512 0.93772 1.08985 1.70927 1.41981 1.28054 1.16296 0.82882 0.76714 0.76400 0.69760 1.21070 1.18870 1.18946 1.22630 0.95771 0.99299 0.98759 0.92155 0.92132 0.92742 0.91556 0.90577 0.89925 0.92425 0.73924 0.84025 0.84129 0.97820 0.97978 0.93632 0.89853 0.89596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 9.12 71.98 0.66 -0.92 16 2 C -0.09 -1.22 3.46 -9.72 -0.03 -1.25 16 3 H 0.08 0.99 8.14 -2.38 -0.02 0.97 16 4 C -0.12 -1.77 6.33 31.88 0.20 -1.57 16 5 C -0.15 -2.96 6.54 31.67 0.21 -2.76 16 6 C 0.13 2.78 3.34 45.71 0.15 2.94 16 7 H 0.09 1.80 7.22 -2.39 -0.02 1.79 16 8 N -1.10 -26.40 5.29 -166.38 -0.88 -27.28 16 9 S 2.62 92.20 5.38 -56.49 -0.30 91.90 16 10 O -0.99 -41.02 17.82 -127.65 -2.27 -43.30 16 11 O -1.00 -41.69 18.08 -127.65 -2.31 -44.00 16 12 C -0.58 -22.02 5.91 71.98 0.43 -21.59 16 13 C 0.00 0.17 4.29 29.85 0.13 0.30 16 14 C -0.61 -34.44 9.11 25.60 0.23 -34.21 16 15 H 0.07 3.54 7.74 -2.91 -0.02 3.52 16 16 C -0.04 -2.42 5.46 84.65 0.46 -1.95 16 17 N -0.94 -58.86 13.65 21.45 0.29 -58.56 16 18 Si 1.12 49.08 29.90 68.60 2.05 51.14 16 19 H -0.29 -12.61 7.11 99.48 0.71 -11.90 16 20 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 21 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 22 C -0.13 -1.88 6.14 31.32 0.19 -1.69 16 23 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 24 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 25 H 0.05 0.62 8.12 -2.39 -0.02 0.60 16 26 H 0.07 1.02 8.04 -2.39 -0.02 1.00 16 27 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 28 H 0.08 1.54 8.14 -2.38 -0.02 1.52 16 29 H 0.06 1.43 8.04 -2.39 -0.02 1.41 16 30 H 0.42 8.35 8.63 -96.75 -0.83 7.51 16 31 H 0.14 4.73 8.14 -2.39 -0.02 4.71 16 32 H 0.14 4.62 7.48 -2.39 -0.02 4.60 16 33 H 0.00 0.20 8.01 -2.38 -0.02 0.18 16 34 H 0.00 0.11 8.00 -2.39 -0.02 0.09 16 35 H 0.25 16.31 7.22 -92.70 -0.67 15.64 16 36 H 0.08 1.16 7.45 -2.38 -0.02 1.14 16 37 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -75.91 314.08 -0.49 -76.40 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: 0.31 Total: 16.42 kcal Atomic # 6 Polarization: -65.34 SS G_CDS: 2.63 Total: -62.72 kcal Atomic # 7 Polarization: -85.25 SS G_CDS: -0.59 Total: -85.84 kcal Atomic # 8 Polarization: -82.72 SS G_CDS: -4.58 Total: -87.30 kcal Atomic # 14 Polarization: 49.08 SS G_CDS: 2.05 Total: 51.14 kcal Atomic # 16 Polarization: 92.20 SS G_CDS: -0.30 Total: 91.90 kcal Total: -75.91 -0.49 -76.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000444217658.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.402 kcal (2) G-P(sol) polarization free energy of solvation -75.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds