Wall clock time and date at job start Mon Mar 30 2020 00:15:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 110.66260 * 2 1 4 4 C 1.54698 * 110.74843 * 123.21109 * 2 1 3 5 5 C 1.51671 * 101.91952 * 93.21824 * 4 2 1 6 6 C 1.37298 * 132.05745 * 195.91007 * 5 4 2 7 7 C 1.39867 * 119.85668 * 179.27455 * 6 5 4 8 8 C 1.47497 * 120.26990 * 179.76357 * 7 6 5 9 9 O 1.21621 * 120.00011 * 336.90424 * 8 7 6 10 10 N 1.34776 * 120.00077 * 156.62334 * 8 7 6 11 11 C 1.46507 * 119.99544 * 355.54879 * 10 8 7 12 12 C 1.36897 * 120.00343 * 175.55400 * 10 8 7 13 13 H 1.07995 * 120.00252 * 22.33972 * 12 10 8 14 14 C 1.39027 * 119.99856 * 202.34469 * 12 10 8 15 15 N 1.31382 * 120.00128 * 11.22315 * 14 12 10 16 16 Si 1.86803 * 119.99749 * 191.22545 * 14 12 10 17 17 H 1.48509 * 109.46935 * 94.97903 * 16 14 12 18 18 H 1.48498 * 109.47037 * 214.97661 * 16 14 12 19 19 H 1.48496 * 109.47152 * 334.98314 * 16 14 12 20 20 C 1.39814 * 119.45577 * 359.49190 * 7 6 5 21 21 C 1.37449 * 120.19758 * 0.46083 * 20 7 6 22 22 C 1.39203 * 107.00575 * 15.15597 * 5 4 2 23 23 O 1.36013 * 111.14956 * 1.46035 * 22 5 4 24 24 H 1.09000 * 109.46665 * 296.78795 * 1 2 3 25 25 H 1.08995 * 109.47189 * 56.78916 * 1 2 3 26 26 H 1.08996 * 109.46809 * 176.79478 * 1 2 3 27 27 H 1.09000 * 110.93994 * 335.06012 * 4 2 1 28 28 H 1.08997 * 110.96892 * 211.39232 * 4 2 1 29 29 H 1.08005 * 120.06420 * 359.01863 * 6 5 4 30 30 H 1.09004 * 109.46840 * 96.17843 * 11 10 8 31 31 H 1.08996 * 109.47152 * 216.17552 * 11 10 8 32 32 H 1.08995 * 109.47527 * 336.17926 * 11 10 8 33 33 H 0.96997 * 119.99642 * 180.02562 * 15 14 12 34 34 H 1.08006 * 119.89853 * 180.43788 * 20 7 6 35 35 H 1.07996 * 119.78388 * 180.02562 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9147 1.0199 0.0000 4 6 2.0781 -0.7924 1.2103 5 6 2.2670 -2.1763 0.6192 6 6 2.4498 -3.4071 1.1994 7 6 2.5850 -4.5431 0.3947 8 6 2.7870 -5.8691 1.0082 9 8 3.2483 -5.9562 2.1302 10 7 2.4551 -6.9841 0.3277 11 6 1.8041 -6.8773 -0.9804 12 6 2.7261 -8.2164 0.8588 13 1 2.8596 -8.3276 1.9247 14 6 2.8297 -9.3248 0.0260 15 7 2.8884 -9.1645 -1.2767 16 14 2.8852 -11.0420 0.7592 17 1 1.5173 -11.6202 0.7699 18 1 3.7792 -11.9007 -0.0585 19 1 3.4030 -10.9703 2.1491 20 6 2.5215 -4.4121 -0.9958 21 6 2.3371 -3.1752 -1.5660 22 6 2.2112 -2.0389 -0.7649 23 8 2.0428 -0.7374 -1.1224 24 1 -0.3633 0.4632 0.9174 25 1 -0.3633 0.5628 -0.8598 26 1 -0.3633 -1.0260 -0.0575 27 1 1.3529 -0.8119 2.0239 28 1 3.0287 -0.3800 1.5484 29 1 2.4932 -3.4973 2.2748 30 1 2.5545 -6.9558 -1.7671 31 1 1.0764 -7.6812 -1.0908 32 1 1.2972 -5.9154 -1.0566 33 1 2.9602 -9.9379 -1.8577 34 1 2.6180 -5.2856 -1.6238 35 1 2.2886 -3.0818 -2.6409 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597011496.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:15:37 Heat of formation + Delta-G solvation = -13.335839 kcal Electronic energy + Delta-G solvation = -19335.654335 eV Core-core repulsion = 16300.306806 eV Total energy + Delta-G solvation = -3035.347529 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 261.115 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.06630 -38.92297 -36.49704 -34.81283 -33.08214 -31.91084 -30.60050 -29.76958 -27.25744 -25.96177 -24.94973 -22.74297 -21.54228 -21.45624 -19.30360 -17.20675 -16.98733 -16.69875 -15.93022 -15.39979 -14.99224 -14.35491 -14.01874 -13.91690 -13.72456 -13.29624 -13.15227 -12.85924 -12.43898 -12.33343 -12.10691 -12.03429 -11.78962 -11.29121 -11.19897 -11.17222 -10.86076 -10.68295 -10.40367 -10.30799 -10.02326 -9.06869 -8.54648 -8.49158 -7.79774 -7.72097 -6.38530 -3.91414 1.40899 1.67528 3.13777 3.22671 3.28450 3.32559 3.67672 4.08443 4.39098 4.44421 4.58512 4.79521 4.91682 5.07188 5.12096 5.13774 5.29450 5.47742 5.60775 5.63416 5.68319 5.75701 5.88117 5.94573 5.97767 6.26108 6.37670 6.59069 6.65811 6.79597 6.85447 6.89457 7.13416 7.42306 7.50334 8.08937 8.43934 9.13281 9.35137 9.94681 10.63865 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.045874 B = 0.004694 C = 0.004431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.224931 B = 5964.259880 C = 6317.319753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.076 3.924 3 H 0.112 0.888 4 C -0.102 4.102 5 C -0.186 4.186 6 C -0.028 4.028 7 C -0.125 4.125 8 C 0.480 3.520 9 O -0.592 6.592 10 N -0.432 5.432 11 C 0.094 3.906 12 C -0.303 4.303 13 H 0.103 0.897 14 C 0.031 3.969 15 N -0.879 5.879 16 Si 0.930 3.070 17 H -0.277 1.277 18 H -0.282 1.282 19 H -0.268 1.268 20 C -0.081 4.081 21 C -0.147 4.147 22 C 0.102 3.898 23 O -0.303 6.303 24 H 0.073 0.927 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.089 0.911 28 H 0.088 0.912 29 H 0.130 0.870 30 H 0.071 0.929 31 H 0.063 0.937 32 H 0.047 0.953 33 H 0.269 0.731 34 H 0.161 0.839 35 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.879 14.241 -1.669 15.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.020 3.980 3 H 0.129 0.871 4 C -0.140 4.140 5 C -0.187 4.187 6 C -0.047 4.047 7 C -0.128 4.128 8 C 0.270 3.730 9 O -0.478 6.478 10 N -0.149 5.149 11 C -0.049 4.049 12 C -0.431 4.431 13 H 0.120 0.880 14 C -0.173 4.173 15 N -0.518 5.518 16 Si 0.757 3.243 17 H -0.203 1.203 18 H -0.208 1.208 19 H -0.192 1.192 20 C -0.099 4.099 21 C -0.165 4.165 22 C 0.057 3.943 23 O -0.217 6.217 24 H 0.092 0.908 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.108 0.892 28 H 0.106 0.894 29 H 0.148 0.852 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.065 0.935 33 H 0.080 0.920 34 H 0.178 0.822 35 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -4.616 14.128 -1.511 14.939 hybrid contribution -0.012 -0.854 0.202 0.878 sum -4.628 13.273 -1.309 14.118 Atomic orbital electron populations 1.22241 0.94418 1.03423 1.02717 1.23367 0.94575 0.96195 0.83849 0.87073 1.21800 1.02348 0.91653 0.98154 1.20552 1.09402 0.95014 0.93767 1.20308 0.94856 0.89266 1.00262 1.20167 1.04321 0.94946 0.93384 1.17806 0.84521 0.83318 0.87320 1.90598 1.50842 1.86670 1.19723 1.43478 1.49177 1.05023 1.17190 1.22208 0.97573 0.98915 0.86168 1.19752 1.46247 0.82723 0.94344 0.87977 1.25399 0.96246 1.00464 0.95192 1.69961 1.47732 1.31276 1.02791 0.85838 0.78154 0.81094 0.79246 1.20331 1.20810 1.19185 1.22136 0.95241 0.97494 0.95074 1.20192 1.07741 0.89161 0.99438 1.19737 0.97088 0.84586 0.92910 1.86814 1.79959 1.16942 1.38018 0.90846 0.91570 0.91639 0.89246 0.89413 0.85236 0.91073 0.91835 0.93499 0.92028 0.82172 0.85557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.58 9.51 37.16 0.35 -1.23 16 2 C 0.08 0.81 4.30 -25.84 -0.11 0.70 16 3 H 0.11 0.90 8.14 -51.93 -0.42 0.48 16 4 C -0.10 -1.19 6.65 -26.51 -0.18 -1.37 16 5 C -0.19 -2.96 6.25 -104.13 -0.65 -3.61 16 6 C -0.03 -0.51 9.58 -39.31 -0.38 -0.89 16 7 C -0.12 -2.61 5.55 -104.93 -0.58 -3.20 16 8 C 0.48 12.34 7.46 -12.49 -0.09 12.24 16 9 O -0.59 -17.07 16.26 5.26 0.09 -16.98 16 10 N -0.43 -11.26 3.01 -123.40 -0.37 -11.63 16 11 C 0.09 2.09 6.93 59.85 0.41 2.51 16 12 C -0.30 -8.45 9.31 -15.00 -0.14 -8.59 16 13 H 0.10 2.98 7.37 -52.49 -0.39 2.60 16 14 C 0.03 0.80 5.15 -17.45 -0.09 0.71 16 15 N -0.88 -22.92 10.56 55.50 0.59 -22.34 16 16 Si 0.93 20.53 29.57 -169.99 -5.03 15.50 16 17 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 18 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 19 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 20 C -0.08 -1.48 7.52 -39.28 -0.30 -1.78 16 21 C -0.15 -2.37 10.05 -39.36 -0.40 -2.76 16 22 C 0.10 1.64 6.91 -38.71 -0.27 1.37 16 23 O -0.30 -4.37 10.82 -19.78 -0.21 -4.58 16 24 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 25 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.06 0.72 8.08 -51.93 -0.42 0.30 16 27 H 0.09 0.89 7.92 -51.93 -0.41 0.48 16 28 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.13 2.41 7.83 -52.48 -0.41 2.00 16 30 H 0.07 1.60 6.39 -51.93 -0.33 1.27 16 31 H 0.06 1.47 7.32 -51.93 -0.38 1.09 16 32 H 0.05 0.90 4.92 -51.93 -0.26 0.64 16 33 H 0.27 6.63 8.31 -40.82 -0.34 6.29 16 34 H 0.16 2.90 4.26 -52.48 -0.22 2.68 16 35 H 0.13 1.73 8.06 -52.49 -0.42 1.31 16 LS Contribution 289.73 15.07 4.37 4.37 Total: -1.00 -31.50 289.73 -7.05 -38.55 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: -4.07 Total: 3.00 kcal Atomic # 6 Polarization: -3.48 SS G_CDS: -2.41 Total: -5.89 kcal Atomic # 7 Polarization: -34.18 SS G_CDS: 0.21 Total: -33.96 kcal Atomic # 8 Polarization: -21.44 SS G_CDS: -0.13 Total: -21.57 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.03 Total: 15.50 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -31.50 -7.05 -38.55 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597011496.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.214 kcal (2) G-P(sol) polarization free energy of solvation -31.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds