Wall clock time and date at job start Mon Mar 30 2020 00:15:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 110.66260 * 2 1 4 4 C 1.54698 * 110.74843 * 123.21109 * 2 1 3 5 5 C 1.51671 * 101.91952 * 93.21824 * 4 2 1 6 6 C 1.37298 * 132.05745 * 195.91007 * 5 4 2 7 7 C 1.39867 * 119.85668 * 179.27455 * 6 5 4 8 8 C 1.47497 * 120.26990 * 179.76357 * 7 6 5 9 9 O 1.21621 * 120.00011 * 336.90424 * 8 7 6 10 10 N 1.34776 * 120.00077 * 156.62334 * 8 7 6 11 11 C 1.46507 * 119.99544 * 355.54879 * 10 8 7 12 12 C 1.36897 * 120.00343 * 175.55400 * 10 8 7 13 13 H 1.07995 * 120.00252 * 22.33972 * 12 10 8 14 14 C 1.39027 * 119.99856 * 202.34469 * 12 10 8 15 15 N 1.31382 * 120.00128 * 11.22315 * 14 12 10 16 16 Si 1.86803 * 119.99749 * 191.22545 * 14 12 10 17 17 H 1.48509 * 109.46935 * 94.97903 * 16 14 12 18 18 H 1.48498 * 109.47037 * 214.97661 * 16 14 12 19 19 H 1.48496 * 109.47152 * 334.98314 * 16 14 12 20 20 C 1.39814 * 119.45577 * 359.49190 * 7 6 5 21 21 C 1.37449 * 120.19758 * 0.46083 * 20 7 6 22 22 C 1.39203 * 107.00575 * 15.15597 * 5 4 2 23 23 O 1.36013 * 111.14956 * 1.46035 * 22 5 4 24 24 H 1.09000 * 109.46665 * 296.78795 * 1 2 3 25 25 H 1.08995 * 109.47189 * 56.78916 * 1 2 3 26 26 H 1.08996 * 109.46809 * 176.79478 * 1 2 3 27 27 H 1.09000 * 110.93994 * 335.06012 * 4 2 1 28 28 H 1.08997 * 110.96892 * 211.39232 * 4 2 1 29 29 H 1.08005 * 120.06420 * 359.01863 * 6 5 4 30 30 H 1.09004 * 109.46840 * 96.17843 * 11 10 8 31 31 H 1.08996 * 109.47152 * 216.17552 * 11 10 8 32 32 H 1.08995 * 109.47527 * 336.17926 * 11 10 8 33 33 H 0.96997 * 119.99642 * 180.02562 * 15 14 12 34 34 H 1.08006 * 119.89853 * 180.43788 * 20 7 6 35 35 H 1.07996 * 119.78388 * 180.02562 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9147 1.0199 0.0000 4 6 2.0781 -0.7924 1.2103 5 6 2.2670 -2.1763 0.6192 6 6 2.4498 -3.4071 1.1994 7 6 2.5850 -4.5431 0.3947 8 6 2.7870 -5.8691 1.0082 9 8 3.2483 -5.9562 2.1302 10 7 2.4551 -6.9841 0.3277 11 6 1.8041 -6.8773 -0.9804 12 6 2.7261 -8.2164 0.8588 13 1 2.8596 -8.3276 1.9247 14 6 2.8297 -9.3248 0.0260 15 7 2.8884 -9.1645 -1.2767 16 14 2.8852 -11.0420 0.7592 17 1 1.5173 -11.6202 0.7699 18 1 3.7792 -11.9007 -0.0585 19 1 3.4030 -10.9703 2.1491 20 6 2.5215 -4.4121 -0.9958 21 6 2.3371 -3.1752 -1.5660 22 6 2.2112 -2.0389 -0.7649 23 8 2.0428 -0.7374 -1.1224 24 1 -0.3633 0.4632 0.9174 25 1 -0.3633 0.5628 -0.8598 26 1 -0.3633 -1.0260 -0.0575 27 1 1.3529 -0.8119 2.0239 28 1 3.0287 -0.3800 1.5484 29 1 2.4932 -3.4973 2.2748 30 1 2.5545 -6.9558 -1.7671 31 1 1.0764 -7.6812 -1.0908 32 1 1.2972 -5.9154 -1.0566 33 1 2.9602 -9.9379 -1.8577 34 1 2.6180 -5.2856 -1.6238 35 1 2.2886 -3.0818 -2.6409 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597011496.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:15:37 Heat of formation + Delta-G solvation = -32.947288 kcal Electronic energy + Delta-G solvation = -19336.504752 eV Core-core repulsion = 16300.306806 eV Total energy + Delta-G solvation = -3036.197946 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 261.115 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.26078 -40.68317 -37.99391 -36.83115 -34.20533 -33.75416 -31.85062 -31.20962 -28.73894 -27.36428 -26.82812 -24.24694 -22.85086 -22.48359 -21.04049 -19.10965 -18.35930 -18.09300 -17.23930 -16.84793 -16.75737 -15.96945 -15.85289 -15.19749 -15.15463 -14.64181 -14.54384 -14.26654 -13.81677 -13.61771 -13.52330 -13.20344 -13.08729 -12.98832 -12.90252 -12.53111 -12.38719 -12.14316 -12.04743 -11.75494 -11.49744 -11.01582 -10.50596 -9.92532 -9.75322 -9.12447 -8.38538 -6.02614 -0.04020 0.31714 1.38221 1.40598 1.53738 1.98204 2.23851 2.28743 2.75320 2.98448 3.13030 3.47230 3.63254 3.87322 3.95418 4.00079 4.19862 4.25855 4.31485 4.54093 4.57033 4.69962 4.81329 4.86491 4.94264 4.97362 5.10085 5.19303 5.26280 5.27564 5.32035 5.40563 5.43974 5.53658 6.04612 6.18686 6.43555 7.09429 7.36408 7.95187 8.62462 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.045874 B = 0.004694 C = 0.004431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.224931 B = 5964.259880 C = 6317.319753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.073 3.927 3 H 0.147 0.853 4 C -0.102 4.102 5 C -0.185 4.185 6 C -0.036 4.036 7 C -0.157 4.157 8 C 0.470 3.530 9 O -0.639 6.639 10 N -0.447 5.447 11 C 0.107 3.893 12 C -0.349 4.349 13 H 0.073 0.927 14 C 0.002 3.998 15 N -0.890 5.890 16 Si 0.995 3.005 17 H -0.264 1.264 18 H -0.270 1.270 19 H -0.276 1.276 20 C -0.079 4.079 21 C -0.143 4.143 22 C 0.112 3.888 23 O -0.308 6.308 24 H 0.098 0.902 25 H 0.076 0.924 26 H 0.043 0.957 27 H 0.108 0.892 28 H 0.103 0.897 29 H 0.120 0.880 30 H 0.067 0.933 31 H 0.049 0.951 32 H 0.077 0.923 33 H 0.277 0.723 34 H 0.159 0.841 35 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.642 16.350 -2.839 17.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.018 3.982 3 H 0.165 0.835 4 C -0.139 4.139 5 C -0.186 4.186 6 C -0.056 4.056 7 C -0.160 4.160 8 C 0.262 3.738 9 O -0.529 6.529 10 N -0.163 5.163 11 C -0.035 4.035 12 C -0.476 4.476 13 H 0.091 0.909 14 C -0.201 4.201 15 N -0.528 5.528 16 Si 0.818 3.182 17 H -0.189 1.189 18 H -0.194 1.194 19 H -0.201 1.201 20 C -0.098 4.098 21 C -0.162 4.162 22 C 0.066 3.934 23 O -0.222 6.222 24 H 0.116 0.884 25 H 0.095 0.905 26 H 0.062 0.938 27 H 0.126 0.874 28 H 0.122 0.878 29 H 0.138 0.862 30 H 0.085 0.915 31 H 0.068 0.932 32 H 0.095 0.905 33 H 0.087 0.913 34 H 0.177 0.823 35 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -5.401 16.261 -2.726 17.350 hybrid contribution 0.216 -1.296 0.533 1.418 sum -5.185 14.965 -2.193 15.988 Atomic orbital electron populations 1.22267 0.93294 1.02502 1.04573 1.23784 0.95528 0.97075 0.81830 0.83543 1.21994 1.03922 0.88798 0.99142 1.20902 1.07450 0.95801 0.94420 1.20263 0.95595 0.89950 0.99743 1.19869 1.08264 0.93050 0.94809 1.18593 0.83404 0.85000 0.86826 1.90530 1.52832 1.87767 1.21816 1.43697 1.49538 1.04728 1.18298 1.22187 0.96953 0.99994 0.84364 1.19692 1.49670 0.84613 0.93664 0.90876 1.26157 0.94898 1.03465 0.95588 1.70017 1.46732 1.32632 1.03391 0.84900 0.78843 0.76464 0.78015 1.18858 1.19442 1.20106 1.22018 0.95434 0.98641 0.93669 1.20400 1.06511 0.88301 1.00962 1.19928 0.95135 0.85479 0.92843 1.86829 1.79778 1.15862 1.39748 0.88371 0.90537 0.93810 0.87352 0.87833 0.86206 0.91506 0.93206 0.90478 0.91259 0.82349 0.82641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.47 9.51 71.98 0.68 -1.79 16 2 C 0.07 1.24 4.30 31.17 0.13 1.37 16 3 H 0.15 1.55 8.14 -2.39 -0.02 1.53 16 4 C -0.10 -2.01 6.65 30.74 0.20 -1.81 16 5 C -0.18 -5.55 6.25 -19.54 -0.12 -5.67 16 6 C -0.04 -1.36 9.58 22.44 0.21 -1.15 16 7 C -0.16 -6.75 5.55 -20.06 -0.11 -6.86 16 8 C 0.47 25.48 7.46 86.68 0.65 26.13 16 9 O -0.64 -39.37 16.26 -4.10 -0.07 -39.44 16 10 N -0.45 -24.39 3.01 -662.56 -2.00 -26.38 16 11 C 0.11 4.87 6.93 127.77 0.89 5.76 16 12 C -0.35 -20.46 9.31 84.09 0.78 -19.67 16 13 H 0.07 4.59 7.37 -2.91 -0.02 4.57 16 14 C 0.00 0.09 5.15 84.95 0.44 0.53 16 15 N -0.89 -46.74 10.56 21.68 0.23 -46.51 16 16 Si 0.99 42.60 29.57 68.60 2.03 44.63 16 17 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 18 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 19 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 20 C -0.08 -2.87 7.52 22.46 0.17 -2.70 16 21 C -0.14 -4.33 10.05 22.41 0.23 -4.10 16 22 C 0.11 3.31 6.91 22.83 0.16 3.47 16 23 O -0.31 -7.71 10.82 -93.70 -1.01 -8.72 16 24 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 25 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.04 0.84 8.08 -2.39 -0.02 0.82 16 27 H 0.11 1.77 7.92 -2.39 -0.02 1.76 16 28 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.12 4.65 7.83 -2.91 -0.02 4.63 16 30 H 0.07 3.07 6.39 -2.39 -0.02 3.06 16 31 H 0.05 2.35 7.32 -2.39 -0.02 2.33 16 32 H 0.08 2.99 4.92 -2.39 -0.01 2.98 16 33 H 0.28 13.50 8.31 -92.71 -0.77 12.73 16 34 H 0.16 5.73 4.26 -2.91 -0.01 5.72 16 35 H 0.16 3.76 8.06 -2.91 -0.02 3.73 16 Total: -1.00 -71.62 289.73 4.60 -67.02 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: 1.11 Total: 15.91 kcal Atomic # 6 Polarization: -10.81 SS G_CDS: 4.31 Total: -6.50 kcal Atomic # 7 Polarization: -71.13 SS G_CDS: -1.77 Total: -72.90 kcal Atomic # 8 Polarization: -47.08 SS G_CDS: -1.08 Total: -48.16 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal Total: -71.62 4.60 -67.02 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597011496.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.074 kcal (2) G-P(sol) polarization free energy of solvation -71.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds