Wall clock time and date at job start Mon Mar 30 2020 00:15:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09009 * 110.66336 * 2 1 4 4 C 1.54699 * 110.74852 * 123.21206 * 2 1 3 5 5 C 1.51668 * 101.91881 * 93.22383 * 4 2 1 6 6 C 1.37314 * 132.05399 * 195.95697 * 5 4 2 7 7 C 1.39812 * 119.85733 * 179.28443 * 6 5 4 8 8 C 1.47602 * 120.26496 * 179.72451 * 7 6 5 9 9 O 1.21579 * 120.00112 * 359.72291 * 8 7 6 10 10 N 1.34784 * 119.99774 * 179.72544 * 8 7 6 11 11 C 1.46494 * 119.99635 * 179.97438 * 10 8 7 12 12 C 1.50707 * 109.47011 * 180.02562 * 11 10 8 13 13 H 1.08002 * 119.99794 * 359.97438 * 12 11 10 14 14 C 1.37876 * 119.99997 * 179.97438 * 12 11 10 15 15 N 1.31516 * 119.99976 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99824 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.47017 * 60.00076 * 16 14 12 18 18 H 1.48498 * 109.47024 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47228 * 300.00476 * 16 14 12 20 20 C 1.39754 * 119.46472 * 359.45021 * 7 6 5 21 21 C 1.37468 * 120.20472 * 0.46101 * 20 7 6 22 22 C 1.39181 * 107.00760 * 15.15740 * 5 4 2 23 23 O 1.35999 * 111.15260 * 1.45840 * 22 5 4 24 24 H 1.09004 * 109.47304 * 296.78885 * 1 2 3 25 25 H 1.08994 * 109.47698 * 56.78854 * 1 2 3 26 26 H 1.09003 * 109.46780 * 176.78826 * 1 2 3 27 27 H 1.08999 * 110.93520 * 335.06270 * 4 2 1 28 28 H 1.09004 * 110.96846 * 211.39372 * 4 2 1 29 29 H 1.07996 * 120.07099 * 359.01190 * 6 5 4 30 30 H 0.96995 * 120.00015 * 359.72389 * 10 8 7 31 31 H 1.09005 * 109.47306 * 299.99972 * 11 10 8 32 32 H 1.09002 * 109.47518 * 60.00210 * 11 10 8 33 33 H 0.96998 * 119.99718 * 180.02562 * 15 14 12 34 34 H 1.08005 * 119.89740 * 180.44120 * 20 7 6 35 35 H 1.07999 * 119.78466 * 180.02562 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9146 1.0200 0.0000 4 6 2.0780 -0.7924 1.2103 5 6 2.2670 -2.1762 0.6191 6 6 2.4491 -3.4073 1.1994 7 6 2.5848 -4.5428 0.3950 8 6 2.7870 -5.8697 1.0091 9 8 2.8411 -5.9778 2.2189 10 7 2.9117 -6.9615 0.2287 11 6 3.1129 -8.2783 0.8382 12 6 3.2217 -9.3215 -0.2441 13 1 3.1478 -9.0324 -1.2821 14 6 3.4154 -10.6448 0.0909 15 7 3.5048 -10.9969 1.3549 16 14 3.5495 -11.9378 -1.2506 17 1 4.7009 -11.6186 -2.1324 18 1 3.7536 -13.2727 -0.6328 19 1 2.3001 -11.9500 -2.0530 20 6 2.5218 -4.4120 -0.9950 21 6 2.3373 -3.1751 -1.5656 22 6 2.2113 -2.0388 -0.7648 23 8 2.0428 -0.7375 -1.1223 24 1 -0.3634 0.4632 0.9174 25 1 -0.3634 0.5628 -0.8597 26 1 -0.3633 -1.0261 -0.0576 27 1 1.3527 -0.8119 2.0238 28 1 3.0287 -0.3800 1.5484 29 1 2.4917 -3.4977 2.2748 30 1 2.8646 -6.8758 -0.7363 31 1 4.0299 -8.2697 1.4275 32 1 2.2674 -8.5123 1.4851 33 1 3.6415 -11.9278 1.5905 34 1 2.6187 -5.2855 -1.6228 35 1 2.2893 -3.0819 -2.6405 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000834652616.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:15:43 Heat of formation + Delta-G solvation = -52.593666 kcal Electronic energy + Delta-G solvation = -18554.729279 eV Core-core repulsion = 15517.679402 eV Total energy + Delta-G solvation = -3037.049877 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 261.115 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.37900 -39.10625 -36.90574 -34.27345 -33.35041 -32.40524 -30.99914 -30.26693 -27.55114 -26.68525 -23.90269 -22.15667 -22.07823 -21.74488 -19.71945 -17.77844 -17.25244 -16.64429 -16.09456 -15.82243 -15.06320 -14.61729 -14.34979 -14.28160 -13.97946 -13.55325 -13.34788 -13.02964 -12.75004 -12.59386 -12.37197 -12.30100 -11.95774 -11.80775 -11.44404 -11.00887 -10.96286 -10.85539 -10.76875 -10.32281 -9.41907 -9.19220 -8.97152 -8.74030 -8.25383 -7.84624 -6.16604 -4.23803 0.96907 1.29944 2.98370 3.25272 3.25943 3.30568 3.32040 3.98565 4.11235 4.18034 4.33300 4.45585 4.58140 4.76091 4.86414 5.01170 5.19290 5.19524 5.26432 5.33657 5.39330 5.48814 5.59482 5.62439 5.79640 5.97658 6.19885 6.28677 6.41675 6.46873 7.04720 7.30713 7.40410 7.51255 7.65787 7.96383 8.59824 8.76607 9.06101 9.42630 10.93615 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.045066 B = 0.003676 C = 0.003476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.168559 B = 7614.769153 C = 8053.159229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.076 3.924 3 H 0.115 0.885 4 C -0.104 4.104 5 C -0.185 4.185 6 C -0.015 4.015 7 C -0.149 4.149 8 C 0.543 3.457 9 O -0.554 6.554 10 N -0.705 5.705 11 C 0.249 3.751 12 C -0.545 4.545 13 H 0.063 0.937 14 C 0.064 3.936 15 N -0.885 5.885 16 Si 0.904 3.096 17 H -0.275 1.275 18 H -0.285 1.285 19 H -0.275 1.275 20 C -0.053 4.053 21 C -0.145 4.145 22 C 0.120 3.880 23 O -0.300 6.300 24 H 0.075 0.925 25 H 0.067 0.933 26 H 0.065 0.935 27 H 0.093 0.907 28 H 0.091 0.909 29 H 0.137 0.863 30 H 0.390 0.610 31 H 0.029 0.971 32 H 0.029 0.971 33 H 0.267 0.733 34 H 0.138 0.862 35 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.442 21.182 -4.674 22.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.020 3.980 3 H 0.133 0.867 4 C -0.141 4.141 5 C -0.186 4.186 6 C -0.034 4.034 7 C -0.152 4.152 8 C 0.329 3.671 9 O -0.435 6.435 10 N -0.353 5.353 11 C 0.129 3.871 12 C -0.583 4.583 13 H 0.081 0.919 14 C -0.140 4.140 15 N -0.523 5.523 16 Si 0.732 3.268 17 H -0.200 1.200 18 H -0.211 1.211 19 H -0.200 1.200 20 C -0.072 4.072 21 C -0.164 4.164 22 C 0.074 3.926 23 O -0.214 6.214 24 H 0.094 0.906 25 H 0.086 0.914 26 H 0.084 0.916 27 H 0.112 0.888 28 H 0.109 0.891 29 H 0.155 0.845 30 H 0.224 0.776 31 H 0.047 0.953 32 H 0.047 0.953 33 H 0.076 0.924 34 H 0.156 0.844 35 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -4.333 20.996 -3.889 21.789 hybrid contribution 0.046 -0.740 -1.004 1.248 sum -4.287 20.257 -4.893 21.276 Atomic orbital electron populations 1.22255 0.94138 1.03501 1.03030 1.23433 0.94771 0.96329 0.83449 0.86700 1.21848 1.02735 0.91212 0.98340 1.20635 1.08873 0.95290 0.93798 1.20365 0.93260 0.89068 1.00708 1.20116 1.07012 0.94580 0.93521 1.18076 0.78106 0.83957 0.86951 1.90729 1.52162 1.86579 1.14020 1.46410 1.70490 1.08736 1.09681 1.19149 0.97439 0.76345 0.94190 1.21184 1.52247 0.92120 0.92775 0.91908 1.24948 0.94704 0.98526 0.95785 1.69964 1.47940 1.18117 1.16247 0.86463 0.78715 0.80272 0.81398 1.20029 1.21065 1.20038 1.21123 0.95146 0.96869 0.94014 1.20147 1.07296 0.89103 0.99842 1.19777 0.95156 0.84845 0.92840 1.86841 1.79600 1.16651 1.38282 0.90594 0.91389 0.91635 0.88850 0.89050 0.84491 0.77634 0.95303 0.95322 0.92359 0.84398 0.85007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.25 9.51 37.16 0.35 -0.90 16 2 C 0.08 0.64 4.30 -25.84 -0.11 0.53 16 3 H 0.12 0.69 8.14 -51.92 -0.42 0.26 16 4 C -0.10 -0.95 6.65 -26.51 -0.18 -1.12 16 5 C -0.19 -2.36 6.25 -104.13 -0.65 -3.01 16 6 C -0.01 -0.23 9.58 -39.33 -0.38 -0.60 16 7 C -0.15 -2.47 5.88 -104.92 -0.62 -3.09 16 8 C 0.54 11.46 7.77 -12.44 -0.10 11.36 16 9 O -0.55 -13.75 16.36 5.30 0.09 -13.66 16 10 N -0.71 -15.24 5.50 -62.51 -0.34 -15.58 16 11 C 0.25 6.66 5.43 -5.19 -0.03 6.64 16 12 C -0.54 -14.81 9.28 -34.44 -0.32 -15.13 16 13 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 14 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 15 N -0.89 -26.11 13.29 55.43 0.74 -25.37 16 16 Si 0.90 20.82 29.54 -169.99 -5.02 15.80 16 17 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 18 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 19 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 20 C -0.05 -0.73 9.52 -39.30 -0.37 -1.10 16 21 C -0.15 -1.82 10.05 -39.36 -0.40 -2.21 16 22 C 0.12 1.54 6.91 -38.73 -0.27 1.27 16 23 O -0.30 -3.54 10.82 -19.74 -0.21 -3.75 16 24 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.06 0.59 8.08 -51.93 -0.42 0.17 16 27 H 0.09 0.71 7.92 -51.93 -0.41 0.30 16 28 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.14 2.07 7.66 -52.49 -0.40 1.67 16 30 H 0.39 7.16 6.36 -40.82 -0.26 6.90 16 31 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 34 H 0.14 1.66 6.40 -52.48 -0.34 1.32 16 35 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 LS Contribution 302.64 15.07 4.56 4.56 Total: -1.00 -32.77 302.64 -7.67 -40.44 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -4.32 Total: 3.25 kcal Atomic # 6 Polarization: -2.53 SS G_CDS: -3.16 Total: -5.68 kcal Atomic # 7 Polarization: -41.35 SS G_CDS: 0.39 Total: -40.95 kcal Atomic # 8 Polarization: -17.28 SS G_CDS: -0.13 Total: -17.41 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -32.77 -7.67 -40.44 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000834652616.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.149 kcal (2) G-P(sol) polarization free energy of solvation -32.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds