Wall clock time and date at job start Mon Mar 30 2020 00:15:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09009 * 110.66336 * 2 1 4 4 C 1.54699 * 110.74852 * 123.21206 * 2 1 3 5 5 C 1.51668 * 101.91881 * 93.22383 * 4 2 1 6 6 C 1.37314 * 132.05399 * 195.95697 * 5 4 2 7 7 C 1.39812 * 119.85733 * 179.28443 * 6 5 4 8 8 C 1.47602 * 120.26496 * 179.72451 * 7 6 5 9 9 O 1.21579 * 120.00112 * 359.72291 * 8 7 6 10 10 N 1.34784 * 119.99774 * 179.72544 * 8 7 6 11 11 C 1.46494 * 119.99635 * 179.97438 * 10 8 7 12 12 C 1.50707 * 109.47011 * 180.02562 * 11 10 8 13 13 H 1.08002 * 119.99794 * 359.97438 * 12 11 10 14 14 C 1.37876 * 119.99997 * 179.97438 * 12 11 10 15 15 N 1.31516 * 119.99976 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99824 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.47017 * 60.00076 * 16 14 12 18 18 H 1.48498 * 109.47024 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47228 * 300.00476 * 16 14 12 20 20 C 1.39754 * 119.46472 * 359.45021 * 7 6 5 21 21 C 1.37468 * 120.20472 * 0.46101 * 20 7 6 22 22 C 1.39181 * 107.00760 * 15.15740 * 5 4 2 23 23 O 1.35999 * 111.15260 * 1.45840 * 22 5 4 24 24 H 1.09004 * 109.47304 * 296.78885 * 1 2 3 25 25 H 1.08994 * 109.47698 * 56.78854 * 1 2 3 26 26 H 1.09003 * 109.46780 * 176.78826 * 1 2 3 27 27 H 1.08999 * 110.93520 * 335.06270 * 4 2 1 28 28 H 1.09004 * 110.96846 * 211.39372 * 4 2 1 29 29 H 1.07996 * 120.07099 * 359.01190 * 6 5 4 30 30 H 0.96995 * 120.00015 * 359.72389 * 10 8 7 31 31 H 1.09005 * 109.47306 * 299.99972 * 11 10 8 32 32 H 1.09002 * 109.47518 * 60.00210 * 11 10 8 33 33 H 0.96998 * 119.99718 * 180.02562 * 15 14 12 34 34 H 1.08005 * 119.89740 * 180.44120 * 20 7 6 35 35 H 1.07999 * 119.78466 * 180.02562 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9146 1.0200 0.0000 4 6 2.0780 -0.7924 1.2103 5 6 2.2670 -2.1762 0.6191 6 6 2.4491 -3.4073 1.1994 7 6 2.5848 -4.5428 0.3950 8 6 2.7870 -5.8697 1.0091 9 8 2.8411 -5.9778 2.2189 10 7 2.9117 -6.9615 0.2287 11 6 3.1129 -8.2783 0.8382 12 6 3.2217 -9.3215 -0.2441 13 1 3.1478 -9.0324 -1.2821 14 6 3.4154 -10.6448 0.0909 15 7 3.5048 -10.9969 1.3549 16 14 3.5495 -11.9378 -1.2506 17 1 4.7009 -11.6186 -2.1324 18 1 3.7536 -13.2727 -0.6328 19 1 2.3001 -11.9500 -2.0530 20 6 2.5218 -4.4120 -0.9950 21 6 2.3373 -3.1751 -1.5656 22 6 2.2113 -2.0388 -0.7648 23 8 2.0428 -0.7375 -1.1223 24 1 -0.3634 0.4632 0.9174 25 1 -0.3634 0.5628 -0.8597 26 1 -0.3633 -1.0261 -0.0576 27 1 1.3527 -0.8119 2.0238 28 1 3.0287 -0.3800 1.5484 29 1 2.4917 -3.4977 2.2748 30 1 2.8646 -6.8758 -0.7363 31 1 4.0299 -8.2697 1.4275 32 1 2.2674 -8.5123 1.4851 33 1 3.6415 -11.9278 1.5905 34 1 2.6187 -5.2855 -1.6228 35 1 2.2893 -3.0819 -2.6405 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000834652616.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:15:42 Heat of formation + Delta-G solvation = -74.829860 kcal Electronic energy + Delta-G solvation = -18555.693512 eV Core-core repulsion = 15517.679402 eV Total energy + Delta-G solvation = -3038.014110 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 261.115 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.31657 -40.68813 -38.12839 -36.23667 -34.47816 -34.11818 -31.98564 -31.43152 -29.31657 -27.69657 -25.50045 -23.83426 -23.12361 -22.55594 -21.34468 -19.34674 -18.28765 -17.89543 -17.51882 -17.10072 -16.61825 -16.32360 -16.14267 -15.21686 -15.13388 -14.66899 -14.53771 -14.24803 -14.12679 -13.91569 -13.61743 -13.50041 -13.20888 -12.98985 -12.94138 -12.67696 -12.23826 -12.14439 -11.83958 -11.76254 -11.52015 -10.97353 -10.80211 -10.02384 -9.93537 -9.21508 -8.29233 -6.46416 -0.21362 0.24863 1.43913 1.48341 1.56440 1.79643 2.19850 2.30286 2.51592 2.77092 3.05784 3.40087 3.56294 3.77375 3.87263 3.95570 4.11128 4.17964 4.28657 4.48027 4.64259 4.78208 4.81868 4.89331 5.01592 5.08670 5.13773 5.21577 5.23218 5.25206 5.30482 5.41371 5.46007 5.66815 5.82549 6.09424 6.62817 6.83285 7.21236 7.39249 8.82980 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.045066 B = 0.003676 C = 0.003476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.168559 B = 7614.769153 C = 8053.159229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.073 3.927 3 H 0.147 0.853 4 C -0.104 4.104 5 C -0.188 4.188 6 C -0.025 4.025 7 C -0.176 4.176 8 C 0.542 3.458 9 O -0.602 6.602 10 N -0.700 5.700 11 C 0.266 3.734 12 C -0.559 4.559 13 H 0.086 0.914 14 C 0.004 3.996 15 N -0.931 5.931 16 Si 0.987 3.013 17 H -0.261 1.261 18 H -0.285 1.285 19 H -0.261 1.261 20 C -0.045 4.045 21 C -0.144 4.144 22 C 0.125 3.875 23 O -0.307 6.307 24 H 0.097 0.903 25 H 0.075 0.925 26 H 0.044 0.956 27 H 0.108 0.892 28 H 0.105 0.895 29 H 0.126 0.874 30 H 0.408 0.592 31 H -0.010 1.010 32 H -0.010 1.010 33 H 0.269 0.731 34 H 0.155 0.845 35 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.860 23.122 -7.352 24.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.018 3.982 3 H 0.164 0.836 4 C -0.141 4.141 5 C -0.189 4.189 6 C -0.044 4.044 7 C -0.179 4.179 8 C 0.332 3.668 9 O -0.486 6.486 10 N -0.349 5.349 11 C 0.143 3.857 12 C -0.596 4.596 13 H 0.104 0.896 14 C -0.195 4.195 15 N -0.569 5.569 16 Si 0.809 3.191 17 H -0.186 1.186 18 H -0.211 1.211 19 H -0.186 1.186 20 C -0.064 4.064 21 C -0.162 4.162 22 C 0.078 3.922 23 O -0.221 6.221 24 H 0.116 0.884 25 H 0.094 0.906 26 H 0.063 0.937 27 H 0.127 0.873 28 H 0.124 0.876 29 H 0.144 0.856 30 H 0.245 0.755 31 H 0.008 0.992 32 H 0.008 0.992 33 H 0.078 0.922 34 H 0.172 0.828 35 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -4.763 22.986 -6.608 24.387 hybrid contribution 0.142 -1.148 -0.134 1.164 sum -4.620 21.838 -6.742 23.318 Atomic orbital electron populations 1.22277 0.93319 1.02575 1.04595 1.23797 0.95476 0.97167 0.81770 0.83554 1.22015 1.04072 0.88870 0.99121 1.20922 1.07603 0.95928 0.94437 1.20328 0.94027 0.89821 1.00201 1.19734 1.10997 0.92165 0.94991 1.18788 0.76333 0.85356 0.86372 1.90688 1.54165 1.87500 1.16239 1.46107 1.70924 1.07275 1.10608 1.18610 0.93991 0.79166 0.93909 1.21584 1.52042 0.92389 0.93625 0.89638 1.26083 0.93825 1.01231 0.98404 1.70135 1.48974 1.18827 1.19005 0.85181 0.79513 0.76460 0.77911 1.18568 1.21095 1.18557 1.21240 0.94237 0.98270 0.92631 1.20415 1.06186 0.88323 1.01283 1.20029 0.93618 0.85639 0.92868 1.86848 1.79437 1.15939 1.39830 0.88442 0.90583 0.93669 0.87348 0.87633 0.85623 0.75537 0.99197 0.99182 0.92181 0.82793 0.82180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.96 9.51 71.98 0.68 -1.27 16 2 C 0.07 0.96 4.30 31.17 0.13 1.10 16 3 H 0.15 1.07 8.14 -2.38 -0.02 1.05 16 4 C -0.10 -1.61 6.65 30.74 0.20 -1.40 16 5 C -0.19 -4.53 6.25 -19.55 -0.12 -4.65 16 6 C -0.02 -0.75 9.58 22.43 0.21 -0.54 16 7 C -0.18 -5.92 5.88 -20.06 -0.12 -6.04 16 8 C 0.54 24.02 7.77 86.71 0.67 24.70 16 9 O -0.60 -31.95 16.36 -3.96 -0.06 -32.02 16 10 N -0.70 -31.33 5.50 -469.93 -2.58 -33.92 16 11 C 0.27 14.99 5.43 85.64 0.46 15.45 16 12 C -0.56 -30.74 9.28 25.60 0.24 -30.50 16 13 H 0.09 4.21 7.60 -2.91 -0.02 4.18 16 14 C 0.00 0.24 5.46 84.65 0.46 0.70 16 15 N -0.93 -56.62 13.29 21.45 0.28 -56.34 16 16 Si 0.99 42.38 29.54 68.60 2.03 44.41 16 17 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 18 H -0.29 -12.18 7.11 99.48 0.71 -11.47 16 19 H -0.26 -10.58 7.11 99.48 0.71 -9.88 16 20 C -0.05 -1.19 9.52 22.45 0.21 -0.97 16 21 C -0.14 -3.24 10.05 22.41 0.23 -3.01 16 22 C 0.12 2.92 6.91 22.82 0.16 3.08 16 23 O -0.31 -6.24 10.82 -93.54 -1.01 -7.26 16 24 H 0.10 0.71 8.14 -2.38 -0.02 0.69 16 25 H 0.08 0.76 8.14 -2.39 -0.02 0.75 16 26 H 0.04 0.71 8.08 -2.39 -0.02 0.69 16 27 H 0.11 1.37 7.92 -2.39 -0.02 1.35 16 28 H 0.11 1.37 8.14 -2.38 -0.02 1.35 16 29 H 0.13 4.02 7.66 -2.91 -0.02 4.00 16 30 H 0.41 14.97 6.36 -92.71 -0.59 14.38 16 31 H -0.01 -0.63 8.14 -2.38 -0.02 -0.65 16 32 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 33 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 34 H 0.15 3.42 6.40 -2.91 -0.02 3.40 16 35 H 0.16 2.69 8.06 -2.91 -0.02 2.67 16 Total: -1.00 -74.57 302.64 2.60 -71.97 By element: Atomic # 1 Polarization: 15.99 SS G_CDS: 0.52 Total: 16.51 kcal Atomic # 6 Polarization: -6.79 SS G_CDS: 3.43 Total: -3.36 kcal Atomic # 7 Polarization: -87.96 SS G_CDS: -2.30 Total: -90.25 kcal Atomic # 8 Polarization: -38.20 SS G_CDS: -1.08 Total: -39.27 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.41 kcal Total: -74.57 2.60 -71.97 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000834652616.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.860 kcal (2) G-P(sol) polarization free energy of solvation -74.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds