Wall clock time and date at job start Mon Mar 30 2020 00:50:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 O 1.21261 * 119.99972 * 2 1 4 4 C 1.46834 * 120.00384 * 179.97438 * 2 1 3 5 5 C 1.50698 * 120.00653 * 179.97438 * 4 2 1 6 6 N 1.29514 * 119.99802 * 0.02562 * 4 2 1 7 7 O 1.41598 * 120.00100 * 179.97438 * 6 4 2 8 8 C 1.42902 * 114.00129 * 180.02562 * 7 6 4 9 9 C 1.50700 * 109.47006 * 180.02562 * 8 7 6 10 10 C 1.38635 * 119.74771 * 269.72229 * 9 8 7 11 11 C 1.37624 * 120.24964 * 179.72094 * 10 9 8 12 12 C 1.40717 * 119.73679 * 0.57836 * 11 10 9 13 13 C 1.41402 * 120.23847 * 179.67688 * 12 11 10 14 14 H 1.07998 * 120.00074 * 204.40505 * 13 12 11 15 15 C 1.39945 * 119.99874 * 24.40735 * 13 12 11 16 16 N 1.30824 * 120.00405 * 17.84641 * 15 13 12 17 17 Si 1.86797 * 119.99936 * 197.84469 * 15 13 12 18 18 H 1.48502 * 109.47151 * 90.00147 * 17 15 13 19 19 H 1.48497 * 109.47468 * 210.00136 * 17 15 13 20 20 H 1.48500 * 109.47187 * 330.00150 * 17 15 13 21 21 C 1.40710 * 119.51686 * 359.69906 * 12 11 10 22 22 C 1.37615 * 119.74272 * 0.02562 * 21 12 11 23 23 H 1.08994 * 109.47515 * 269.99881 * 1 2 3 24 24 H 1.09004 * 109.47176 * 30.00151 * 1 2 3 25 25 H 1.09004 * 109.47337 * 150.00220 * 1 2 3 26 26 H 1.08994 * 109.47531 * 270.00750 * 5 4 2 27 27 H 1.09011 * 109.46537 * 30.00606 * 5 4 2 28 28 H 1.08996 * 109.47157 * 150.00114 * 5 4 2 29 29 H 1.08996 * 109.46817 * 300.00094 * 8 7 6 30 30 H 1.08998 * 109.46848 * 59.99826 * 8 7 6 31 31 H 1.08005 * 119.87970 * 359.97438 * 10 9 8 32 32 H 1.07997 * 120.13071 * 180.27955 * 11 10 9 33 33 H 0.97002 * 120.00394 * 180.02562 * 16 15 13 34 34 H 1.08003 * 120.12782 * 179.97438 * 21 12 11 35 35 H 1.08003 * 119.87400 * 180.02562 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1132 1.0502 0.0000 4 6 2.2412 -1.2716 0.0006 5 6 3.7482 -1.2716 0.0000 6 7 1.5936 -2.3932 0.0006 7 8 2.3016 -3.6195 0.0006 8 6 1.4617 -4.7756 0.0000 9 6 2.3160 -6.0171 0.0007 10 6 2.7020 -6.5871 -1.2027 11 6 3.4869 -7.7176 -1.2141 12 6 3.8873 -8.3017 0.0019 13 6 4.6880 -9.4671 0.0025 14 1 4.6746 -10.1310 0.8542 15 6 5.4978 -9.7603 -1.1006 16 7 5.7920 -8.8223 -1.9638 17 14 6.1587 -11.4909 -1.3404 18 1 5.1968 -12.2802 -2.1508 19 1 7.4649 -11.4289 -2.0441 20 1 6.3399 -12.1394 -0.0168 21 6 3.4847 -7.7177 1.2172 22 6 2.7046 -6.5841 1.2045 23 1 -0.3634 0.0000 1.0276 24 1 -0.3634 0.8900 -0.5139 25 1 -0.3634 -0.8900 -0.5138 26 1 4.1111 -1.2722 -1.0277 27 1 4.1117 -0.3813 0.5132 28 1 4.1116 -2.1613 0.5142 29 1 0.8322 -4.7677 0.8897 30 1 0.8328 -4.7673 -0.8902 31 1 2.3891 -6.1401 -2.1347 32 1 3.7902 -8.1575 -2.1526 33 1 6.3530 -9.0256 -2.7286 34 1 3.7860 -8.1580 2.1562 35 1 2.3947 -6.1339 2.1361 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000902758738.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:49 Heat of formation + Delta-G solvation = -12.644644 kcal Electronic energy + Delta-G solvation = -18140.594346 eV Core-core repulsion = 15105.276789 eV Total energy + Delta-G solvation = -3035.317557 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 261.115 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.70532 -38.02885 -37.07926 -34.71113 -33.63616 -30.69338 -30.27034 -29.37875 -28.21112 -26.68955 -23.94298 -23.06226 -21.09781 -20.05992 -18.97123 -17.40393 -16.78918 -16.11009 -15.63769 -15.40617 -14.97462 -14.77178 -14.59957 -13.97769 -13.53518 -13.46709 -12.94774 -12.69287 -12.53897 -12.34386 -12.10714 -12.03888 -11.72984 -11.31606 -11.08396 -11.03695 -10.74025 -10.59416 -10.42613 -9.88138 -9.61316 -9.48950 -9.30237 -9.20081 -7.58031 -7.46923 -6.87674 -4.47875 0.75321 2.32556 2.63367 2.84321 2.99089 3.02103 3.04859 3.20921 3.84498 3.87086 4.51154 4.84213 5.07395 5.20606 5.28704 5.49020 5.59000 5.62315 5.71771 5.72620 5.79668 6.01107 6.14628 6.25602 6.30721 6.42874 6.85835 6.96528 7.07329 7.17150 7.25384 7.48390 7.50365 7.73801 7.94557 7.99941 8.18105 8.52760 8.77459 8.85506 10.06095 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.042972 B = 0.003421 C = 0.003317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.430983 B = 8181.658157 C = 8438.253457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.421 3.579 3 O -0.444 6.444 4 C 0.045 3.955 5 C -0.139 4.139 6 N -0.284 5.284 7 O -0.207 6.207 8 C 0.136 3.864 9 C -0.233 4.233 10 C -0.076 4.076 11 C -0.170 4.170 12 C 0.118 3.882 13 C -0.457 4.457 14 H 0.080 0.920 15 C 0.075 3.925 16 N -0.785 5.785 17 Si 0.911 3.089 18 H -0.266 1.266 19 H -0.277 1.277 20 H -0.261 1.261 21 C -0.230 4.230 22 C -0.064 4.064 23 H 0.100 0.900 24 H 0.088 0.912 25 H 0.094 0.906 26 H 0.082 0.918 27 H 0.078 0.922 28 H 0.085 0.915 29 H 0.050 0.950 30 H 0.051 0.949 31 H 0.088 0.912 32 H 0.120 0.880 33 H 0.283 0.717 34 H 0.094 0.906 35 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.816 9.452 1.201 11.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C 0.295 3.705 3 O -0.314 6.314 4 C -0.146 4.146 5 C -0.198 4.198 6 N -0.032 5.032 7 O -0.229 6.229 8 C 0.061 3.939 9 C -0.236 4.236 10 C -0.095 4.095 11 C -0.190 4.190 12 C 0.115 3.885 13 C -0.486 4.486 14 H 0.098 0.902 15 C -0.144 4.144 16 N -0.410 5.410 17 Si 0.735 3.265 18 H -0.191 1.191 19 H -0.202 1.202 20 H -0.185 1.185 21 C -0.250 4.250 22 C -0.083 4.083 23 H 0.119 0.881 24 H 0.107 0.893 25 H 0.113 0.887 26 H 0.101 0.899 27 H 0.097 0.903 28 H 0.103 0.897 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.107 0.893 32 H 0.137 0.863 33 H 0.094 0.906 34 H 0.113 0.887 35 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -7.009 9.702 0.987 12.009 hybrid contribution 1.049 -0.814 -0.184 1.340 sum -5.960 8.888 0.804 10.731 Atomic orbital electron populations 1.22190 0.92460 1.05339 1.05158 1.22150 0.91860 0.85863 0.70616 1.90567 1.72362 1.33012 1.35459 1.25150 0.96930 0.92836 0.99641 1.21108 0.90302 1.04373 1.03989 1.76382 1.27587 0.93638 1.05594 1.90215 1.31501 1.09300 1.91850 1.21241 0.92107 0.80685 0.99855 1.18678 1.12751 0.98065 0.94059 1.20544 0.97442 0.96376 0.95103 1.21299 1.00797 0.98067 0.98814 1.17683 0.88723 0.91111 0.90940 1.19690 1.20583 1.06313 1.01982 0.90158 1.25972 0.94929 0.98743 0.94763 1.69828 1.27192 1.33255 1.10692 0.86267 0.78473 0.82132 0.79637 1.19142 1.20213 1.18509 1.20965 1.07498 0.99408 0.97116 1.20391 0.96875 0.95810 0.95208 0.88142 0.89294 0.88682 0.89932 0.90295 0.89659 0.93137 0.93053 0.89337 0.86258 0.90627 0.88750 0.89318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.61 10.01 36.00 0.36 -1.25 16 2 C 0.42 4.91 7.23 -30.84 -0.22 4.69 16 3 O -0.44 -6.11 17.10 5.57 0.10 -6.01 16 4 C 0.05 0.62 7.11 -80.10 -0.57 0.05 16 5 C -0.14 -1.86 9.56 36.00 0.34 -1.52 16 6 N -0.28 -4.36 10.48 34.93 0.37 -3.99 16 7 O -0.21 -3.85 10.13 -11.47 -0.12 -3.96 16 8 C 0.14 2.48 6.51 36.01 0.23 2.71 16 9 C -0.23 -5.05 5.53 -104.33 -0.58 -5.63 16 10 C -0.08 -1.75 9.67 -39.66 -0.38 -2.14 16 11 C -0.17 -4.34 8.70 -38.87 -0.34 -4.68 16 12 C 0.12 3.08 5.58 -106.82 -0.60 2.49 16 13 C -0.46 -11.80 9.05 -37.74 -0.34 -12.14 16 14 H 0.08 1.99 7.91 -52.49 -0.41 1.57 16 15 C 0.07 1.83 5.14 -17.34 -0.09 1.74 16 16 N -0.79 -19.82 10.95 55.55 0.61 -19.21 16 17 Si 0.91 18.10 29.59 -169.99 -5.03 13.07 16 18 H -0.27 -5.23 7.11 56.52 0.40 -4.82 16 19 H -0.28 -5.39 7.11 56.52 0.40 -4.99 16 20 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 21 C -0.23 -5.55 9.80 -38.88 -0.38 -5.93 16 22 C -0.06 -1.42 9.67 -39.66 -0.38 -1.81 16 23 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.09 0.79 7.61 -51.93 -0.40 0.39 16 26 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 27 H 0.08 0.95 7.70 -51.92 -0.40 0.55 16 28 H 0.08 1.27 7.35 -51.93 -0.38 0.89 16 29 H 0.05 0.84 8.08 -51.93 -0.42 0.42 16 30 H 0.05 0.87 8.08 -51.93 -0.42 0.45 16 31 H 0.09 1.86 8.06 -52.48 -0.42 1.43 16 32 H 0.12 3.12 6.16 -52.49 -0.32 2.80 16 33 H 0.28 6.47 8.30 -40.82 -0.34 6.13 16 34 H 0.09 2.13 8.06 -52.48 -0.42 1.71 16 35 H 0.09 1.74 8.06 -52.48 -0.42 1.31 16 LS Contribution 312.92 15.07 4.72 4.72 Total: -1.00 -27.88 312.92 -6.73 -34.61 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -4.43 Total: 4.21 kcal Atomic # 6 Polarization: -20.48 SS G_CDS: -2.94 Total: -23.42 kcal Atomic # 7 Polarization: -24.18 SS G_CDS: 0.97 Total: -23.20 kcal Atomic # 8 Polarization: -9.96 SS G_CDS: -0.02 Total: -9.98 kcal Atomic # 14 Polarization: 18.10 SS G_CDS: -5.03 Total: 13.07 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -27.88 -6.73 -34.61 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902758738.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.961 kcal (2) G-P(sol) polarization free energy of solvation -27.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds