Wall clock time and date at job start Mon Mar 30 2020 00:50:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 O 1.21261 * 119.99972 * 2 1 4 4 C 1.46834 * 120.00384 * 179.97438 * 2 1 3 5 5 C 1.50698 * 120.00653 * 179.97438 * 4 2 1 6 6 N 1.29514 * 119.99802 * 0.02562 * 4 2 1 7 7 O 1.41598 * 120.00100 * 179.97438 * 6 4 2 8 8 C 1.42902 * 114.00129 * 180.02562 * 7 6 4 9 9 C 1.50700 * 109.47006 * 180.02562 * 8 7 6 10 10 C 1.38635 * 119.74771 * 269.72229 * 9 8 7 11 11 C 1.37624 * 120.24964 * 179.72094 * 10 9 8 12 12 C 1.40717 * 119.73679 * 0.57836 * 11 10 9 13 13 C 1.41402 * 120.23847 * 179.67688 * 12 11 10 14 14 H 1.07998 * 120.00074 * 204.40505 * 13 12 11 15 15 C 1.39945 * 119.99874 * 24.40735 * 13 12 11 16 16 N 1.30824 * 120.00405 * 17.84641 * 15 13 12 17 17 Si 1.86797 * 119.99936 * 197.84469 * 15 13 12 18 18 H 1.48502 * 109.47151 * 90.00147 * 17 15 13 19 19 H 1.48497 * 109.47468 * 210.00136 * 17 15 13 20 20 H 1.48500 * 109.47187 * 330.00150 * 17 15 13 21 21 C 1.40710 * 119.51686 * 359.69906 * 12 11 10 22 22 C 1.37615 * 119.74272 * 0.02562 * 21 12 11 23 23 H 1.08994 * 109.47515 * 269.99881 * 1 2 3 24 24 H 1.09004 * 109.47176 * 30.00151 * 1 2 3 25 25 H 1.09004 * 109.47337 * 150.00220 * 1 2 3 26 26 H 1.08994 * 109.47531 * 270.00750 * 5 4 2 27 27 H 1.09011 * 109.46537 * 30.00606 * 5 4 2 28 28 H 1.08996 * 109.47157 * 150.00114 * 5 4 2 29 29 H 1.08996 * 109.46817 * 300.00094 * 8 7 6 30 30 H 1.08998 * 109.46848 * 59.99826 * 8 7 6 31 31 H 1.08005 * 119.87970 * 359.97438 * 10 9 8 32 32 H 1.07997 * 120.13071 * 180.27955 * 11 10 9 33 33 H 0.97002 * 120.00394 * 180.02562 * 16 15 13 34 34 H 1.08003 * 120.12782 * 179.97438 * 21 12 11 35 35 H 1.08003 * 119.87400 * 180.02562 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1132 1.0502 0.0000 4 6 2.2412 -1.2716 0.0006 5 6 3.7482 -1.2716 0.0000 6 7 1.5936 -2.3932 0.0006 7 8 2.3016 -3.6195 0.0006 8 6 1.4617 -4.7756 0.0000 9 6 2.3160 -6.0171 0.0007 10 6 2.7020 -6.5871 -1.2027 11 6 3.4869 -7.7176 -1.2141 12 6 3.8873 -8.3017 0.0019 13 6 4.6880 -9.4671 0.0025 14 1 4.6746 -10.1310 0.8542 15 6 5.4978 -9.7603 -1.1006 16 7 5.7920 -8.8223 -1.9638 17 14 6.1587 -11.4909 -1.3404 18 1 5.1968 -12.2802 -2.1508 19 1 7.4649 -11.4289 -2.0441 20 1 6.3399 -12.1394 -0.0168 21 6 3.4847 -7.7177 1.2172 22 6 2.7046 -6.5841 1.2045 23 1 -0.3634 0.0000 1.0276 24 1 -0.3634 0.8900 -0.5139 25 1 -0.3634 -0.8900 -0.5138 26 1 4.1111 -1.2722 -1.0277 27 1 4.1117 -0.3813 0.5132 28 1 4.1116 -2.1613 0.5142 29 1 0.8322 -4.7677 0.8897 30 1 0.8328 -4.7673 -0.8902 31 1 2.3891 -6.1401 -2.1347 32 1 3.7902 -8.1575 -2.1526 33 1 6.3530 -9.0256 -2.7286 34 1 3.7860 -8.1580 2.1562 35 1 2.3947 -6.1339 2.1361 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000902758738.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:48 Heat of formation + Delta-G solvation = -27.048615 kcal Electronic energy + Delta-G solvation = -18141.218949 eV Core-core repulsion = 15105.276789 eV Total energy + Delta-G solvation = -3035.942160 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 261.115 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.71577 -39.69840 -38.48784 -36.14601 -35.26536 -32.33701 -31.23133 -31.13620 -29.48251 -28.27758 -25.45807 -24.25098 -22.94401 -21.82697 -20.04676 -19.27017 -17.86747 -17.43605 -17.14023 -16.70899 -16.16629 -16.04734 -15.90184 -15.67072 -15.01146 -14.93021 -14.25573 -14.21801 -13.86302 -13.55699 -13.52392 -13.07069 -13.00264 -12.93250 -12.73553 -12.59864 -12.29197 -12.12077 -11.63683 -11.54277 -11.32297 -11.06802 -10.80329 -10.56370 -9.43884 -9.33244 -8.69109 -6.40337 -0.29811 0.71182 1.10786 1.35533 1.39251 1.51479 1.61028 1.66935 2.18824 2.68048 2.90159 3.68162 3.94338 4.03259 4.24396 4.26677 4.38507 4.49239 4.52051 4.56992 4.60160 4.60709 4.64520 4.98629 5.01019 5.11696 5.11808 5.26737 5.31765 5.40196 5.65267 5.88094 6.00372 6.05422 6.16019 6.32316 6.34239 6.64507 6.88408 6.97291 8.27515 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.042972 B = 0.003421 C = 0.003317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.430983 B = 8181.658157 C = 8438.253457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.428 3.572 3 O -0.464 6.464 4 C 0.053 3.947 5 C -0.142 4.142 6 N -0.283 5.283 7 O -0.239 6.239 8 C 0.144 3.856 9 C -0.226 4.226 10 C -0.082 4.082 11 C -0.194 4.194 12 C 0.087 3.913 13 C -0.495 4.495 14 H 0.079 0.921 15 C 0.035 3.965 16 N -0.820 5.820 17 Si 0.985 3.015 18 H -0.261 1.261 19 H -0.268 1.268 20 H -0.257 1.257 21 C -0.246 4.246 22 C -0.067 4.067 23 H 0.120 0.880 24 H 0.107 0.893 25 H 0.097 0.903 26 H 0.087 0.913 27 H 0.092 0.908 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.106 0.894 32 H 0.103 0.897 33 H 0.290 0.710 34 H 0.101 0.899 35 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.982 10.646 1.479 13.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.304 3.696 3 O -0.335 6.335 4 C -0.138 4.138 5 C -0.201 4.201 6 N -0.034 5.034 7 O -0.258 6.258 8 C 0.069 3.931 9 C -0.228 4.228 10 C -0.100 4.100 11 C -0.214 4.214 12 C 0.084 3.916 13 C -0.524 4.524 14 H 0.097 0.903 15 C -0.181 4.181 16 N -0.445 5.445 17 Si 0.806 3.194 18 H -0.185 1.185 19 H -0.192 1.192 20 H -0.181 1.181 21 C -0.266 4.266 22 C -0.085 4.085 23 H 0.138 0.862 24 H 0.125 0.875 25 H 0.116 0.884 26 H 0.106 0.894 27 H 0.111 0.889 28 H 0.086 0.914 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.124 0.876 32 H 0.121 0.879 33 H 0.101 0.899 34 H 0.119 0.881 35 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -8.180 10.881 1.272 13.672 hybrid contribution 1.348 -0.906 -0.235 1.641 sum -6.832 9.975 1.037 12.135 Atomic orbital electron populations 1.22234 0.89184 1.06367 1.06652 1.22524 0.93243 0.84340 0.69540 1.90577 1.73081 1.33283 1.36571 1.25709 0.97419 0.93437 0.97265 1.21136 0.90447 1.04214 1.04273 1.76463 1.26523 0.92623 1.07750 1.90124 1.32388 1.10643 1.92671 1.21076 0.91194 0.79368 1.01480 1.19083 1.11312 0.99188 0.93254 1.20799 0.96845 0.95680 0.96697 1.21276 1.02478 0.99489 0.98146 1.18032 0.89665 0.91987 0.91890 1.19932 1.22139 1.07126 1.03204 0.90293 1.26824 0.94656 1.02716 0.93913 1.69879 1.28013 1.35266 1.11376 0.85156 0.78011 0.76647 0.79634 1.18537 1.19246 1.18091 1.21181 1.08261 1.00291 0.96841 1.20725 0.96003 0.95008 0.96761 0.86170 0.87487 0.88420 0.89434 0.88885 0.91352 0.91234 0.91728 0.87580 0.87907 0.89934 0.88103 0.86414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.44 10.01 71.23 0.71 -1.73 16 2 C 0.43 8.86 7.23 27.93 0.20 9.06 16 3 O -0.46 -11.68 17.10 -2.97 -0.05 -11.73 16 4 C 0.05 1.35 7.11 45.15 0.32 1.67 16 5 C -0.14 -3.63 9.56 71.24 0.68 -2.95 16 6 N -0.28 -8.06 10.48 -43.39 -0.45 -8.52 16 7 O -0.24 -8.52 10.13 -38.78 -0.39 -8.91 16 8 C 0.14 4.93 6.51 71.24 0.46 5.39 16 9 C -0.23 -9.59 5.53 -19.68 -0.11 -9.69 16 10 C -0.08 -3.79 9.67 22.22 0.21 -3.57 16 11 C -0.19 -10.24 8.70 22.73 0.20 -10.05 16 12 C 0.09 4.68 5.58 -21.29 -0.12 4.57 16 13 C -0.50 -26.53 9.05 23.46 0.21 -26.32 16 14 H 0.08 4.06 7.91 -2.91 -0.02 4.04 16 15 C 0.03 1.73 5.14 85.26 0.44 2.17 16 16 N -0.82 -42.70 10.95 21.83 0.24 -42.46 16 17 Si 0.99 37.60 29.59 68.60 2.03 39.63 16 18 H -0.26 -9.63 7.11 99.48 0.71 -8.92 16 19 H -0.27 -9.72 7.11 99.48 0.71 -9.02 16 20 H -0.26 -9.54 7.11 99.48 0.71 -8.83 16 21 C -0.25 -12.06 9.80 22.73 0.22 -11.83 16 22 C -0.07 -2.90 9.67 22.22 0.21 -2.69 16 23 H 0.12 1.17 8.14 -2.39 -0.02 1.15 16 24 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 25 H 0.10 1.28 7.61 -2.39 -0.02 1.26 16 26 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 27 H 0.09 2.09 7.70 -2.38 -0.02 2.07 16 28 H 0.07 2.00 7.35 -2.39 -0.02 1.98 16 29 H 0.07 2.11 8.08 -2.39 -0.02 2.09 16 30 H 0.06 2.03 8.08 -2.39 -0.02 2.01 16 31 H 0.11 4.42 8.06 -2.91 -0.02 4.40 16 32 H 0.10 5.65 6.16 -2.91 -0.02 5.63 16 33 H 0.29 13.59 8.30 -92.71 -0.77 12.82 16 34 H 0.10 4.64 8.06 -2.91 -0.02 4.62 16 35 H 0.12 4.37 8.06 -2.91 -0.02 4.34 16 Total: -1.00 -61.26 312.92 6.11 -55.14 By element: Atomic # 1 Polarization: 21.74 SS G_CDS: 1.09 Total: 22.83 kcal Atomic # 6 Polarization: -49.63 SS G_CDS: 3.65 Total: -45.98 kcal Atomic # 7 Polarization: -50.76 SS G_CDS: -0.22 Total: -50.98 kcal Atomic # 8 Polarization: -20.20 SS G_CDS: -0.44 Total: -20.65 kcal Atomic # 14 Polarization: 37.60 SS G_CDS: 2.03 Total: 39.63 kcal Total: -61.26 6.11 -55.14 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902758738.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.095 kcal (2) G-P(sol) polarization free energy of solvation -61.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds