Wall clock time and date at job start Mon Mar 30 2020 00:37:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31008 * 1 3 3 C 1.50697 * 119.99911 * 2 1 4 4 H 1.08998 * 109.47119 * 0.02562 * 3 2 1 5 5 C 1.53005 * 109.47314 * 240.00286 * 3 2 1 6 6 O 1.42897 * 109.47138 * 120.00128 * 3 2 1 7 7 N 1.41598 * 114.00470 * 204.99972 * 6 3 2 8 8 C 1.34779 * 120.00473 * 180.02562 * 7 6 3 9 9 O 1.21543 * 119.99455 * 0.02562 * 8 7 6 10 10 C 1.47887 * 120.00064 * 180.02562 * 8 7 6 11 11 C 1.39918 * 120.02378 * 359.72048 * 10 8 7 12 12 C 1.38327 * 120.35300 * 179.78799 * 11 10 8 13 13 C 1.37752 * 120.41582 * 0.47045 * 12 11 10 14 14 C 1.40744 * 120.03886 * 359.78892 * 13 12 11 15 15 C 1.41437 * 120.18241 * 179.97438 * 14 13 12 16 16 H 1.07994 * 120.00411 * 150.17797 * 15 14 13 17 17 C 1.39944 * 119.99439 * 330.17453 * 15 14 13 18 18 N 1.30832 * 119.99609 * 161.73056 * 17 15 14 19 19 Si 1.86799 * 120.00201 * 341.72958 * 17 15 14 20 20 H 1.48507 * 109.46719 * 95.41129 * 19 17 15 21 21 H 1.48500 * 109.47041 * 215.41171 * 19 17 15 22 22 H 1.48497 * 109.47134 * 335.41638 * 19 17 15 23 23 C 1.38994 * 120.01979 * 180.02562 * 10 8 7 24 24 H 1.07995 * 119.99762 * 180.02562 * 1 2 3 25 25 H 1.07996 * 119.99662 * 359.71633 * 1 2 3 26 26 H 1.07995 * 119.99708 * 180.02562 * 2 1 3 27 27 H 1.08998 * 109.46868 * 179.97438 * 5 3 2 28 28 H 1.08994 * 109.46711 * 299.99939 * 5 3 2 29 29 H 1.09001 * 109.46590 * 60.00016 * 5 3 2 30 30 H 0.97006 * 119.99815 * 0.02562 * 7 6 3 31 31 H 1.08000 * 119.82563 * 0.02562 * 11 10 8 32 32 H 1.08011 * 119.79460 * 180.23913 * 12 11 10 33 33 H 1.07998 * 119.98132 * 179.76560 * 13 12 11 34 34 H 0.96994 * 119.99997 * 180.02562 * 18 17 15 35 35 H 1.07989 * 120.20544 * 359.95201 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3552 2.1335 0.0005 5 6 2.9431 1.3862 -1.2493 6 8 2.8851 1.3808 1.1667 7 7 3.1897 2.7029 1.5720 8 6 3.9579 2.9146 2.6590 9 8 4.3895 1.9705 3.2912 10 6 4.2755 4.2955 3.0825 11 6 3.7836 5.3825 2.3517 12 6 4.0728 6.6770 2.7442 13 6 4.8560 6.9110 3.8530 14 6 5.3642 5.8301 4.5975 15 6 6.1691 6.0669 5.7361 16 1 6.1665 5.3630 6.5551 17 6 6.9690 7.2134 5.8012 18 7 7.4276 7.6263 6.9549 19 14 7.3819 8.1541 4.2411 20 1 6.4226 9.2748 4.0704 21 1 8.7617 8.6942 4.3393 22 1 7.2895 7.2412 3.0735 23 6 5.0681 4.5142 4.2032 24 1 -0.5399 -0.9353 0.0004 25 1 -0.5399 0.9353 0.0046 26 1 1.8500 -0.9353 -0.0004 27 1 3.4877 2.3304 -1.2495 28 1 3.6514 0.5578 -1.2493 29 1 2.3164 1.3285 -2.1392 30 1 2.8455 3.4564 1.0672 31 1 3.1717 5.2100 1.4786 32 1 3.6852 7.5095 2.1756 33 1 5.0806 7.9245 4.1509 34 1 7.9817 8.4211 7.0001 35 1 5.4533 3.6781 4.7678 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001300210845.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:37:52 Heat of formation + Delta-G solvation = 5.850304 kcal Electronic energy + Delta-G solvation = -18509.677001 eV Core-core repulsion = 15475.161445 eV Total energy + Delta-G solvation = -3034.515556 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 261.115 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.39672 -38.06606 -37.07271 -34.48428 -33.76650 -31.97827 -30.46666 -30.11827 -29.47006 -25.28181 -23.74985 -22.95074 -20.81068 -20.69205 -19.83681 -18.40478 -17.54213 -16.34901 -15.94449 -15.45820 -14.88370 -14.76107 -14.42506 -14.27847 -13.70769 -13.58877 -13.38677 -12.81073 -12.79879 -12.47341 -12.14522 -11.99546 -11.70393 -11.19922 -11.12333 -11.07364 -10.83563 -10.59505 -10.06498 -9.91552 -9.77848 -9.49334 -9.21916 -8.67759 -7.94555 -7.83084 -7.05293 -4.60575 1.65112 1.84472 2.35886 2.45336 3.02137 3.14707 3.22728 3.58169 3.89321 4.37353 4.42971 4.56995 4.66956 4.90427 5.05769 5.22730 5.28399 5.41323 5.47502 5.65355 5.78068 5.87989 5.93331 6.22477 6.31607 6.32156 6.58378 6.60798 6.89747 7.02447 7.12394 7.31476 7.41799 7.62723 7.70051 7.90830 8.23276 8.46754 8.64788 8.70887 9.96598 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.042035 B = 0.004050 C = 0.003895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.951523 B = 6911.110636 C = 7187.893872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.147 4.147 3 C 0.086 3.914 4 H 0.076 0.924 5 C -0.174 4.174 6 O -0.139 6.139 7 N -0.600 5.600 8 C 0.575 3.425 9 O -0.528 6.528 10 C -0.096 4.096 11 C -0.222 4.222 12 C -0.079 4.079 13 C -0.222 4.222 14 C 0.083 3.917 15 C -0.440 4.440 16 H 0.095 0.905 17 C 0.083 3.917 18 N -0.801 5.801 19 Si 0.911 3.089 20 H -0.269 1.269 21 H -0.288 1.288 22 H -0.243 1.243 23 C -0.132 4.132 24 H 0.107 0.893 25 H 0.099 0.901 26 H 0.120 0.880 27 H 0.064 0.936 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.406 0.594 31 H 0.095 0.905 32 H 0.101 0.899 33 H 0.105 0.895 34 H 0.287 0.713 35 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.599 -5.257 -14.440 18.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.166 4.166 3 C 0.027 3.973 4 H 0.094 0.906 5 C -0.231 4.231 6 O -0.143 6.143 7 N -0.304 5.304 8 C 0.366 3.634 9 O -0.404 6.404 10 C -0.099 4.099 11 C -0.242 4.242 12 C -0.098 4.098 13 C -0.241 4.241 14 C 0.080 3.920 15 C -0.468 4.468 16 H 0.113 0.887 17 C -0.137 4.137 18 N -0.424 5.424 19 Si 0.737 3.263 20 H -0.195 1.195 21 H -0.216 1.216 22 H -0.166 1.166 23 C -0.152 4.152 24 H 0.125 0.875 25 H 0.117 0.883 26 H 0.138 0.862 27 H 0.083 0.917 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.247 0.753 31 H 0.113 0.887 32 H 0.119 0.881 33 H 0.123 0.877 34 H 0.098 0.902 35 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -9.045 -5.982 -13.661 17.442 hybrid contribution -0.134 0.890 -1.090 1.413 sum -9.178 -5.092 -14.751 18.104 Atomic orbital electron populations 1.23951 0.95497 1.02478 0.98623 1.22649 0.95572 0.97322 1.01044 1.21623 0.92398 0.96897 0.86367 0.90571 1.22310 1.00469 1.03395 0.96938 1.90625 1.71359 1.07080 1.45224 1.47712 1.55276 0.96733 1.30696 1.18868 0.76553 0.90145 0.77839 1.90727 1.52067 1.43848 1.53712 1.19156 1.02911 0.88742 0.99121 1.20357 1.09052 0.92424 1.02362 1.20498 0.97680 0.95366 0.96229 1.21189 1.04579 0.98120 1.00233 1.17677 0.91779 0.90573 0.91956 1.19548 1.20069 1.05473 1.01662 0.88681 1.26191 0.93964 0.95738 0.97789 1.69688 1.25521 1.20915 1.26263 0.86304 0.76953 0.80035 0.82998 1.19483 1.21572 1.16600 1.21270 1.00731 0.96959 0.96251 0.87486 0.88274 0.86245 0.91739 0.91309 0.91293 0.75264 0.88743 0.88107 0.87740 0.90210 0.86356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.34 14.32 29.01 0.42 -0.92 16 2 C -0.15 -1.42 9.15 -36.03 -0.33 -1.75 16 3 C 0.09 0.94 3.22 -27.88 -0.09 0.85 16 4 H 0.08 0.72 7.58 -51.93 -0.39 0.32 16 5 C -0.17 -1.63 9.55 37.16 0.35 -1.28 16 6 O -0.14 -2.23 10.73 -29.62 -0.32 -2.55 16 7 N -0.60 -9.84 6.32 30.54 0.19 -9.65 16 8 C 0.58 11.93 7.92 -12.31 -0.10 11.83 16 9 O -0.53 -12.89 16.74 -12.83 -0.21 -13.10 16 10 C -0.10 -2.03 5.87 -105.04 -0.62 -2.65 16 11 C -0.22 -4.16 9.55 -38.92 -0.37 -4.53 16 12 C -0.08 -1.56 10.01 -39.73 -0.40 -1.96 16 13 C -0.22 -5.03 7.17 -38.81 -0.28 -5.31 16 14 C 0.08 2.06 5.10 -106.87 -0.55 1.51 16 15 C -0.44 -11.63 9.57 -37.73 -0.36 -11.99 16 16 H 0.10 2.65 8.06 -52.49 -0.42 2.22 16 17 C 0.08 2.11 5.40 -17.34 -0.09 2.02 16 18 N -0.80 -20.78 13.93 55.55 0.77 -20.01 16 19 Si 0.91 19.91 24.52 -169.99 -4.17 15.75 16 20 H -0.27 -5.61 6.71 56.52 0.38 -5.24 16 21 H -0.29 -6.11 7.11 56.52 0.40 -5.71 16 22 H -0.24 -5.43 6.86 56.52 0.39 -5.04 16 23 C -0.13 -3.14 9.34 -38.44 -0.36 -3.50 16 24 H 0.11 0.68 8.06 -52.49 -0.42 0.26 16 25 H 0.10 0.71 7.83 -52.49 -0.41 0.29 16 26 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.41 5.27 6.44 -40.82 -0.26 5.01 16 31 H 0.09 1.39 6.38 -52.49 -0.33 1.05 16 32 H 0.10 1.66 8.06 -52.48 -0.42 1.23 16 33 H 0.10 2.34 4.72 -52.49 -0.25 2.09 16 34 H 0.29 6.71 8.30 -40.82 -0.34 6.38 16 35 H 0.12 2.88 7.64 -52.49 -0.40 2.48 16 LS Contribution 304.63 15.07 4.59 4.59 Total: -1.00 -29.98 304.63 -6.09 -36.07 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: -4.18 Total: 6.57 kcal Atomic # 6 Polarization: -14.91 SS G_CDS: -2.77 Total: -17.68 kcal Atomic # 7 Polarization: -30.62 SS G_CDS: 0.97 Total: -29.65 kcal Atomic # 8 Polarization: -15.12 SS G_CDS: -0.53 Total: -15.65 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -4.17 Total: 15.75 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -29.98 -6.09 -36.07 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001300210845.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.921 kcal (2) G-P(sol) polarization free energy of solvation -29.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.071 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds