Wall clock time and date at job start Mon Mar 30 2020 00:37:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31008 * 1 3 3 C 1.50697 * 119.99911 * 2 1 4 4 H 1.08998 * 109.47119 * 0.02562 * 3 2 1 5 5 C 1.53005 * 109.47314 * 240.00286 * 3 2 1 6 6 O 1.42897 * 109.47138 * 120.00128 * 3 2 1 7 7 N 1.41598 * 114.00470 * 204.99972 * 6 3 2 8 8 C 1.34779 * 120.00473 * 180.02562 * 7 6 3 9 9 O 1.21543 * 119.99455 * 0.02562 * 8 7 6 10 10 C 1.47887 * 120.00064 * 180.02562 * 8 7 6 11 11 C 1.39918 * 120.02378 * 359.72048 * 10 8 7 12 12 C 1.38327 * 120.35300 * 179.78799 * 11 10 8 13 13 C 1.37752 * 120.41582 * 0.47045 * 12 11 10 14 14 C 1.40744 * 120.03886 * 359.78892 * 13 12 11 15 15 C 1.41437 * 120.18241 * 179.97438 * 14 13 12 16 16 H 1.07994 * 120.00411 * 150.17797 * 15 14 13 17 17 C 1.39944 * 119.99439 * 330.17453 * 15 14 13 18 18 N 1.30832 * 119.99609 * 161.73056 * 17 15 14 19 19 Si 1.86799 * 120.00201 * 341.72958 * 17 15 14 20 20 H 1.48507 * 109.46719 * 95.41129 * 19 17 15 21 21 H 1.48500 * 109.47041 * 215.41171 * 19 17 15 22 22 H 1.48497 * 109.47134 * 335.41638 * 19 17 15 23 23 C 1.38994 * 120.01979 * 180.02562 * 10 8 7 24 24 H 1.07995 * 119.99762 * 180.02562 * 1 2 3 25 25 H 1.07996 * 119.99662 * 359.71633 * 1 2 3 26 26 H 1.07995 * 119.99708 * 180.02562 * 2 1 3 27 27 H 1.08998 * 109.46868 * 179.97438 * 5 3 2 28 28 H 1.08994 * 109.46711 * 299.99939 * 5 3 2 29 29 H 1.09001 * 109.46590 * 60.00016 * 5 3 2 30 30 H 0.97006 * 119.99815 * 0.02562 * 7 6 3 31 31 H 1.08000 * 119.82563 * 0.02562 * 11 10 8 32 32 H 1.08011 * 119.79460 * 180.23913 * 12 11 10 33 33 H 1.07998 * 119.98132 * 179.76560 * 13 12 11 34 34 H 0.96994 * 119.99997 * 180.02562 * 18 17 15 35 35 H 1.07989 * 120.20544 * 359.95201 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3552 2.1335 0.0005 5 6 2.9431 1.3862 -1.2493 6 8 2.8851 1.3808 1.1667 7 7 3.1897 2.7029 1.5720 8 6 3.9579 2.9146 2.6590 9 8 4.3895 1.9705 3.2912 10 6 4.2755 4.2955 3.0825 11 6 3.7836 5.3825 2.3517 12 6 4.0728 6.6770 2.7442 13 6 4.8560 6.9110 3.8530 14 6 5.3642 5.8301 4.5975 15 6 6.1691 6.0669 5.7361 16 1 6.1665 5.3630 6.5551 17 6 6.9690 7.2134 5.8012 18 7 7.4276 7.6263 6.9549 19 14 7.3819 8.1541 4.2411 20 1 6.4226 9.2748 4.0704 21 1 8.7617 8.6942 4.3393 22 1 7.2895 7.2412 3.0735 23 6 5.0681 4.5142 4.2032 24 1 -0.5399 -0.9353 0.0004 25 1 -0.5399 0.9353 0.0046 26 1 1.8500 -0.9353 -0.0004 27 1 3.4877 2.3304 -1.2495 28 1 3.6514 0.5578 -1.2493 29 1 2.3164 1.3285 -2.1392 30 1 2.8455 3.4564 1.0672 31 1 3.1717 5.2100 1.4786 32 1 3.6852 7.5095 2.1756 33 1 5.0806 7.9245 4.1509 34 1 7.9817 8.4211 7.0001 35 1 5.4533 3.6781 4.7678 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001300210845.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:37:51 Heat of formation + Delta-G solvation = -12.979450 kcal Electronic energy + Delta-G solvation = -18510.493520 eV Core-core repulsion = 15475.161445 eV Total energy + Delta-G solvation = -3035.332075 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 261.115 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.96649 -39.39209 -38.63230 -35.66942 -35.42683 -33.45937 -32.05953 -31.55865 -30.56208 -27.11084 -25.04994 -24.12391 -22.49407 -22.07343 -20.94170 -19.77120 -19.05326 -18.04132 -17.40449 -16.72299 -16.48957 -16.19533 -15.77685 -15.51107 -15.30427 -14.61869 -14.58816 -14.56591 -14.33528 -13.84973 -13.38332 -13.15962 -12.85916 -12.84595 -12.69068 -12.33252 -12.10942 -11.94250 -11.76148 -11.58725 -11.24653 -10.95763 -10.56392 -10.06534 -9.64801 -9.58556 -8.91429 -6.56178 0.12154 0.64441 0.73033 1.27081 1.40702 1.43823 1.50548 1.89809 2.13282 2.63153 3.41479 3.44755 3.70169 3.77211 3.92804 4.10959 4.24572 4.37078 4.40860 4.56386 4.73609 4.76786 4.84838 4.90349 4.97724 5.12508 5.17837 5.39017 5.58123 5.58711 5.59896 5.67830 5.77780 5.83943 6.06766 6.27501 6.37824 6.63944 6.72995 7.21538 8.17592 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.042035 B = 0.004050 C = 0.003895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.951523 B = 6911.110636 C = 7187.893872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.175 4.175 3 C 0.077 3.923 4 H 0.099 0.901 5 C -0.171 4.171 6 O -0.165 6.165 7 N -0.576 5.576 8 C 0.574 3.426 9 O -0.578 6.578 10 C -0.100 4.100 11 C -0.183 4.183 12 C -0.077 4.077 13 C -0.222 4.222 14 C 0.069 3.931 15 C -0.488 4.488 16 H 0.050 0.950 17 C 0.045 3.955 18 N -0.849 5.849 19 Si 0.968 3.032 20 H -0.243 1.243 21 H -0.279 1.279 22 H -0.249 1.249 23 C -0.164 4.164 24 H 0.123 0.877 25 H 0.112 0.888 26 H 0.115 0.885 27 H 0.063 0.937 28 H 0.056 0.944 29 H 0.093 0.907 30 H 0.424 0.576 31 H 0.152 0.848 32 H 0.153 0.847 33 H 0.110 0.890 34 H 0.296 0.704 35 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.369 -3.914 -18.895 22.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.195 4.195 3 C 0.020 3.980 4 H 0.117 0.883 5 C -0.228 4.228 6 O -0.170 6.170 7 N -0.280 5.280 8 C 0.364 3.636 9 O -0.457 6.457 10 C -0.104 4.104 11 C -0.203 4.203 12 C -0.095 4.095 13 C -0.242 4.242 14 C 0.066 3.934 15 C -0.518 4.518 16 H 0.068 0.932 17 C -0.170 4.170 18 N -0.474 5.474 19 Si 0.789 3.211 20 H -0.168 1.168 21 H -0.205 1.205 22 H -0.173 1.173 23 C -0.184 4.184 24 H 0.141 0.859 25 H 0.130 0.870 26 H 0.133 0.867 27 H 0.082 0.918 28 H 0.075 0.925 29 H 0.112 0.888 30 H 0.270 0.730 31 H 0.169 0.831 32 H 0.171 0.829 33 H 0.127 0.873 34 H 0.106 0.894 35 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -11.865 -4.622 -18.164 22.182 hybrid contribution 0.436 0.272 0.074 0.519 sum -11.428 -4.351 -18.090 21.835 Atomic orbital electron populations 1.24225 0.94863 1.03912 0.95476 1.22648 0.96253 0.96684 1.03873 1.22011 0.92565 0.98393 0.85020 0.88295 1.22299 1.00439 1.02837 0.97220 1.90654 1.72617 1.06087 1.47638 1.47220 1.53318 0.98243 1.29203 1.18720 0.76903 0.89358 0.78593 1.90709 1.54228 1.45113 1.55647 1.19322 1.02333 0.90328 0.98373 1.21012 1.06070 0.91072 1.02112 1.21057 0.95988 0.97336 0.95100 1.21434 1.04446 0.97536 1.00757 1.17733 0.91995 0.91654 0.92008 1.19482 1.23730 1.06331 1.02224 0.93199 1.26945 0.93181 0.96173 1.00704 1.69725 1.27381 1.22312 1.28020 0.85464 0.77775 0.79149 0.78679 1.16775 1.20533 1.17257 1.21176 1.03103 0.96139 0.98021 0.85893 0.86992 0.86728 0.91799 0.92505 0.88817 0.73015 0.83080 0.82928 0.87282 0.89372 0.89179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 14.32 67.77 0.97 -0.86 16 2 C -0.18 -2.96 9.15 25.64 0.23 -2.73 16 3 C 0.08 1.46 3.22 29.85 0.10 1.55 16 4 H 0.10 1.40 7.58 -2.39 -0.02 1.38 16 5 C -0.17 -2.68 9.55 71.98 0.69 -2.00 16 6 O -0.16 -4.96 10.73 -21.42 -0.23 -5.19 16 7 N -0.58 -17.17 6.32 -175.58 -1.11 -18.28 16 8 C 0.57 23.22 7.92 86.80 0.69 23.90 16 9 O -0.58 -28.94 16.74 13.51 0.23 -28.71 16 10 C -0.10 -4.10 5.87 -20.13 -0.12 -4.22 16 11 C -0.18 -5.89 9.55 22.70 0.22 -5.67 16 12 C -0.08 -2.61 10.01 22.18 0.22 -2.38 16 13 C -0.22 -9.59 7.17 22.77 0.16 -9.43 16 14 C 0.07 3.49 5.10 -21.32 -0.11 3.38 16 15 C -0.49 -27.86 9.57 23.47 0.22 -27.63 16 16 H 0.05 3.13 8.06 -2.91 -0.02 3.11 16 17 C 0.04 2.37 5.40 85.26 0.46 2.83 16 18 N -0.85 -46.53 13.93 21.83 0.30 -46.23 16 19 Si 0.97 40.71 24.52 68.60 1.68 42.39 16 20 H -0.24 -9.17 6.71 99.48 0.67 -8.50 16 21 H -0.28 -11.16 7.11 99.48 0.71 -10.45 16 22 H -0.25 -10.59 6.86 99.48 0.68 -9.90 16 23 C -0.16 -8.12 9.34 23.01 0.21 -7.91 16 24 H 0.12 1.13 8.06 -2.91 -0.02 1.10 16 25 H 0.11 1.10 7.83 -2.91 -0.02 1.07 16 26 H 0.11 1.99 8.06 -2.91 -0.02 1.97 16 27 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.42 8.80 6.44 -92.70 -0.60 8.21 16 31 H 0.15 3.19 6.38 -2.91 -0.02 3.17 16 32 H 0.15 3.74 8.06 -2.90 -0.02 3.72 16 33 H 0.11 4.60 4.72 -2.91 -0.01 4.58 16 34 H 0.30 14.42 8.30 -92.71 -0.77 13.65 16 35 H 0.09 4.84 7.64 -2.92 -0.02 4.82 16 Total: -1.00 -71.54 304.63 5.27 -66.28 By element: Atomic # 1 Polarization: 20.46 SS G_CDS: 0.44 Total: 20.90 kcal Atomic # 6 Polarization: -35.11 SS G_CDS: 3.95 Total: -31.16 kcal Atomic # 7 Polarization: -63.70 SS G_CDS: -0.81 Total: -64.51 kcal Atomic # 8 Polarization: -33.90 SS G_CDS: 0.00 Total: -33.90 kcal Atomic # 14 Polarization: 40.71 SS G_CDS: 1.68 Total: 42.39 kcal Total: -71.54 5.27 -66.28 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001300210845.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.297 kcal (2) G-P(sol) polarization free energy of solvation -71.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds