Wall clock time and date at job start Mon Mar 30 2020 00:50:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46498 * 109.47401 * 2 1 4 4 C 1.36935 * 119.99990 * 275.24391 * 3 2 1 5 5 H 1.07996 * 120.00120 * 146.57097 * 4 3 2 6 6 C 1.38813 * 119.99757 * 326.57554 * 4 3 2 7 7 N 1.31610 * 120.00329 * 336.12828 * 6 4 3 8 8 Si 1.86806 * 119.99963 * 156.13055 * 6 4 3 9 9 H 1.48499 * 109.46865 * 59.99805 * 8 6 4 10 10 H 1.48499 * 109.47189 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.46987 * 300.00333 * 8 6 4 12 12 S 1.65602 * 119.99994 * 95.23820 * 3 2 1 13 13 O 1.42110 * 104.27495 * 153.93278 * 12 3 2 14 14 O 1.42100 * 104.27611 * 26.07848 * 12 3 2 15 15 C 1.81396 * 104.45099 * 270.00221 * 12 3 2 16 16 C 1.53001 * 109.47243 * 180.02562 * 15 12 3 17 17 H 1.09002 * 109.46935 * 55.00222 * 16 15 12 18 18 C 1.53001 * 109.47334 * 295.00457 * 16 15 12 19 19 C 1.53001 * 109.47176 * 175.00148 * 16 15 12 20 20 C 1.52998 * 117.49614 * 248.62097 * 19 16 15 21 21 C 1.52998 * 60.00105 * 252.51368 * 20 19 16 22 22 H 1.08998 * 109.47373 * 300.00334 * 1 2 3 23 23 H 1.09003 * 109.47096 * 60.00434 * 1 2 3 24 24 H 1.09003 * 109.47385 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47373 * 239.99665 * 2 1 3 26 26 H 1.09003 * 109.47096 * 119.99566 * 2 1 3 27 27 H 0.97001 * 120.00778 * 180.02562 * 7 6 4 28 28 H 1.09007 * 109.46928 * 60.00418 * 15 12 3 29 29 H 1.09004 * 109.47404 * 300.00280 * 15 12 3 30 30 H 1.09002 * 109.46918 * 299.99776 * 18 16 15 31 31 H 1.08997 * 109.47202 * 179.97438 * 18 16 15 32 32 H 1.09003 * 109.47063 * 59.99526 * 18 16 15 33 33 H 1.08997 * 115.54952 * 34.33181 * 19 16 15 34 34 H 1.08998 * 117.50203 * 0.02562 * 20 19 16 35 35 H 1.09000 * 117.49459 * 145.02413 * 20 19 16 36 36 H 1.09002 * 117.50105 * 252.51605 * 21 20 19 37 37 H 1.08998 * 117.49993 * 107.49149 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1444 2.0628 -1.1809 5 1 1.9694 3.1281 -1.2109 6 6 2.4971 1.3845 -2.3396 7 7 3.1521 0.2456 -2.2619 8 14 2.0421 2.0882 -4.0091 9 1 2.6693 3.4245 -4.1706 10 1 2.5297 1.1805 -5.0785 11 1 0.5660 2.2194 -4.1053 12 16 2.4178 2.1182 1.4282 13 8 3.3745 3.1021 1.0591 14 8 2.7668 1.0444 2.2910 15 6 0.8779 2.9027 1.9790 16 6 1.1199 3.6260 3.3053 17 1 1.9478 4.3259 3.1916 18 6 1.4630 2.6022 4.3894 19 6 -0.1429 4.3907 3.7072 20 6 -0.0842 5.9191 3.6726 21 6 -0.1021 5.1844 5.0145 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 3.3989 -0.2283 -3.0715 28 1 0.1104 2.1407 2.1151 29 1 0.5475 3.6212 1.2287 30 1 0.6351 1.9023 4.5031 31 1 1.6359 3.1176 5.3341 32 1 2.3626 2.0575 4.1030 33 1 -1.0860 3.9166 3.4354 34 1 0.8539 6.3799 3.3632 35 1 -0.9889 6.4509 3.3780 36 1 -1.0185 5.2328 5.6027 37 1 0.8244 5.1618 5.5883 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001309102772.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:25 Heat of formation + Delta-G solvation = -50.875168 kcal Electronic energy + Delta-G solvation = -18874.620005 eV Core-core repulsion = 15973.088599 eV Total energy + Delta-G solvation = -2901.531406 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 261.119 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -38.18939 -36.02310 -35.80023 -34.76860 -33.31843 -31.61240 -29.18139 -27.26242 -24.53581 -23.39892 -22.30690 -21.55230 -19.83758 -18.35471 -17.15698 -16.35029 -15.93427 -15.43330 -14.99458 -14.48674 -14.17585 -13.86932 -13.38996 -13.12612 -12.81036 -12.43364 -12.28551 -11.90442 -11.69217 -11.49794 -11.37205 -11.16546 -10.98311 -10.93698 -10.87652 -10.81909 -10.67536 -10.43298 -10.38657 -10.11399 -9.92349 -9.80818 -9.61158 -8.94498 -7.63963 -6.17965 -3.86928 1.34630 3.25501 3.30480 3.32191 3.75168 3.95853 4.39014 4.59709 4.75973 4.82074 4.91822 5.00267 5.11869 5.14720 5.38922 5.48822 5.57476 5.58306 5.80511 5.83078 5.88508 6.07522 6.08044 6.11916 6.14997 6.26562 6.35587 6.40374 6.44697 6.62995 6.94925 7.33575 7.48175 7.86786 8.49029 9.09301 9.45970 10.84271 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.026852 B = 0.006690 C = 0.006213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.495763 B = 4184.606802 C = 4505.781172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.107 3.893 3 N -0.847 5.847 4 C -0.292 4.292 5 H 0.089 0.911 6 C 0.039 3.961 7 N -0.860 5.860 8 Si 0.911 3.089 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.275 1.275 12 S 2.565 3.435 13 O -0.967 6.967 14 O -0.989 6.989 15 C -0.626 4.626 16 C -0.048 4.048 17 H 0.078 0.922 18 C -0.175 4.175 19 C -0.137 4.137 20 C -0.183 4.183 21 C -0.182 4.182 22 H 0.034 0.966 23 H 0.059 0.941 24 H 0.047 0.953 25 H 0.115 0.885 26 H 0.060 0.940 27 H 0.266 0.734 28 H 0.123 0.877 29 H 0.127 0.873 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.078 0.922 33 H 0.106 0.894 34 H 0.096 0.904 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.094 4.749 8.643 12.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.020 4.020 3 N -0.678 5.678 4 C -0.426 4.426 5 H 0.107 0.893 6 C -0.168 4.168 7 N -0.500 5.500 8 Si 0.738 3.262 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.201 1.201 12 S 2.663 3.337 13 O -0.957 6.957 14 O -0.979 6.979 15 C -0.752 4.752 16 C -0.068 4.068 17 H 0.097 0.903 18 C -0.232 4.232 19 C -0.156 4.156 20 C -0.220 4.220 21 C -0.219 4.219 22 H 0.053 0.947 23 H 0.078 0.922 24 H 0.066 0.934 25 H 0.132 0.868 26 H 0.078 0.922 27 H 0.076 0.924 28 H 0.141 0.859 29 H 0.145 0.855 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.096 0.904 33 H 0.124 0.876 34 H 0.114 0.886 35 H 0.111 0.889 36 H 0.110 0.890 37 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -7.158 4.634 9.047 12.432 hybrid contribution -1.041 0.494 -0.982 1.513 sum -8.199 5.128 8.065 12.592 Atomic orbital electron populations 1.22235 0.99058 1.00071 1.00950 1.21349 0.91230 0.84573 1.04894 1.52583 1.77158 1.20465 1.17595 1.18968 1.45417 0.93785 0.84462 0.89335 1.25252 0.95168 0.96886 0.99490 1.69969 1.34044 1.16934 1.29047 0.86254 0.78963 0.79008 0.81960 1.19821 1.21028 1.20088 1.06867 0.76465 0.75152 0.75185 1.93471 1.56544 1.63846 1.81870 1.93419 1.82092 1.53149 1.69256 1.30825 1.25964 1.12586 1.05857 1.20414 0.96980 0.96841 0.92518 0.90337 1.22249 1.03569 0.98915 0.98464 1.22271 0.99201 0.92966 1.01143 1.23057 1.03339 0.94580 1.01015 1.22958 1.03072 1.05044 0.90823 0.94731 0.92216 0.93379 0.86753 0.92158 0.92384 0.85865 0.85470 0.91682 0.91894 0.90362 0.87594 0.88577 0.88909 0.88962 0.88722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.03 10.21 37.16 0.38 -2.65 16 2 C 0.11 2.42 5.98 -4.05 -0.02 2.40 16 3 N -0.85 -20.65 2.78 -59.91 -0.17 -20.82 16 4 C -0.29 -7.65 8.78 -15.06 -0.13 -7.78 16 5 H 0.09 2.24 7.94 -52.49 -0.42 1.83 16 6 C 0.04 1.01 4.98 -17.43 -0.09 0.93 16 7 N -0.86 -23.55 11.28 55.49 0.63 -22.92 16 8 Si 0.91 20.16 29.62 -169.99 -5.03 15.13 16 9 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 10 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 11 H -0.28 -5.90 7.11 56.52 0.40 -5.49 16 12 S 2.56 57.40 5.04 -107.50 -0.54 56.86 16 13 O -0.97 -25.10 17.22 -57.54 -0.99 -26.09 16 14 O -0.99 -23.37 14.28 -57.54 -0.82 -24.19 16 15 C -0.63 -10.49 5.60 37.16 0.21 -10.28 16 16 C -0.05 -0.72 2.54 -90.62 -0.23 -0.95 16 17 H 0.08 1.20 7.90 -51.93 -0.41 0.79 16 18 C -0.17 -2.53 8.72 37.16 0.32 -2.21 16 19 C -0.14 -1.70 5.15 -90.62 -0.47 -2.17 16 20 C -0.18 -2.05 10.18 -26.73 -0.27 -2.32 16 21 C -0.18 -1.91 9.73 -26.73 -0.26 -2.17 16 22 H 0.03 0.56 6.98 -51.93 -0.36 0.20 16 23 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 24 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.12 2.87 5.31 -51.93 -0.28 2.59 16 26 H 0.06 1.34 6.81 -51.93 -0.35 0.99 16 27 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 28 H 0.12 1.85 6.98 -51.92 -0.36 1.49 16 29 H 0.13 2.03 8.14 -51.92 -0.42 1.61 16 30 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.06 0.76 7.29 -51.93 -0.38 0.38 16 32 H 0.08 1.31 5.61 -51.93 -0.29 1.02 16 33 H 0.11 1.25 8.11 -51.93 -0.42 0.83 16 34 H 0.10 1.09 8.05 -51.93 -0.42 0.67 16 35 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 36 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.09 0.96 7.61 -51.93 -0.40 0.56 16 LS Contribution 309.14 15.07 4.66 4.66 Total: -1.00 -31.07 309.14 -8.59 -39.66 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -5.76 Total: 4.91 kcal Atomic # 6 Polarization: -26.63 SS G_CDS: -0.56 Total: -27.20 kcal Atomic # 7 Polarization: -44.20 SS G_CDS: 0.46 Total: -43.74 kcal Atomic # 8 Polarization: -48.47 SS G_CDS: -1.81 Total: -50.28 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.03 Total: 15.13 kcal Atomic # 16 Polarization: 57.40 SS G_CDS: -0.54 Total: 56.86 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -31.07 -8.59 -39.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001309102772.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.219 kcal (2) G-P(sol) polarization free energy of solvation -31.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds