Wall clock time and date at job start Mon Mar 30 2020 00:50:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46498 * 109.47401 * 2 1 4 4 C 1.36935 * 119.99990 * 275.24391 * 3 2 1 5 5 H 1.07996 * 120.00120 * 146.57097 * 4 3 2 6 6 C 1.38813 * 119.99757 * 326.57554 * 4 3 2 7 7 N 1.31610 * 120.00329 * 336.12828 * 6 4 3 8 8 Si 1.86806 * 119.99963 * 156.13055 * 6 4 3 9 9 H 1.48499 * 109.46865 * 59.99805 * 8 6 4 10 10 H 1.48499 * 109.47189 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.46987 * 300.00333 * 8 6 4 12 12 S 1.65602 * 119.99994 * 95.23820 * 3 2 1 13 13 O 1.42110 * 104.27495 * 153.93278 * 12 3 2 14 14 O 1.42100 * 104.27611 * 26.07848 * 12 3 2 15 15 C 1.81396 * 104.45099 * 270.00221 * 12 3 2 16 16 C 1.53001 * 109.47243 * 180.02562 * 15 12 3 17 17 H 1.09002 * 109.46935 * 55.00222 * 16 15 12 18 18 C 1.53001 * 109.47334 * 295.00457 * 16 15 12 19 19 C 1.53001 * 109.47176 * 175.00148 * 16 15 12 20 20 C 1.52998 * 117.49614 * 248.62097 * 19 16 15 21 21 C 1.52998 * 60.00105 * 252.51368 * 20 19 16 22 22 H 1.08998 * 109.47373 * 300.00334 * 1 2 3 23 23 H 1.09003 * 109.47096 * 60.00434 * 1 2 3 24 24 H 1.09003 * 109.47385 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47373 * 239.99665 * 2 1 3 26 26 H 1.09003 * 109.47096 * 119.99566 * 2 1 3 27 27 H 0.97001 * 120.00778 * 180.02562 * 7 6 4 28 28 H 1.09007 * 109.46928 * 60.00418 * 15 12 3 29 29 H 1.09004 * 109.47404 * 300.00280 * 15 12 3 30 30 H 1.09002 * 109.46918 * 299.99776 * 18 16 15 31 31 H 1.08997 * 109.47202 * 179.97438 * 18 16 15 32 32 H 1.09003 * 109.47063 * 59.99526 * 18 16 15 33 33 H 1.08997 * 115.54952 * 34.33181 * 19 16 15 34 34 H 1.08998 * 117.50203 * 0.02562 * 20 19 16 35 35 H 1.09000 * 117.49459 * 145.02413 * 20 19 16 36 36 H 1.09002 * 117.50105 * 252.51605 * 21 20 19 37 37 H 1.08998 * 117.49993 * 107.49149 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1444 2.0628 -1.1809 5 1 1.9694 3.1281 -1.2109 6 6 2.4971 1.3845 -2.3396 7 7 3.1521 0.2456 -2.2619 8 14 2.0421 2.0882 -4.0091 9 1 2.6693 3.4245 -4.1706 10 1 2.5297 1.1805 -5.0785 11 1 0.5660 2.2194 -4.1053 12 16 2.4178 2.1182 1.4282 13 8 3.3745 3.1021 1.0591 14 8 2.7668 1.0444 2.2910 15 6 0.8779 2.9027 1.9790 16 6 1.1199 3.6260 3.3053 17 1 1.9478 4.3259 3.1916 18 6 1.4630 2.6022 4.3894 19 6 -0.1429 4.3907 3.7072 20 6 -0.0842 5.9191 3.6726 21 6 -0.1021 5.1844 5.0145 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 3.3989 -0.2283 -3.0715 28 1 0.1104 2.1407 2.1151 29 1 0.5475 3.6212 1.2287 30 1 0.6351 1.9023 4.5031 31 1 1.6359 3.1176 5.3341 32 1 2.3626 2.0575 4.1030 33 1 -1.0860 3.9166 3.4354 34 1 0.8539 6.3799 3.3632 35 1 -0.9889 6.4509 3.3780 36 1 -1.0185 5.2328 5.6027 37 1 0.8244 5.1618 5.5883 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001309102772.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:24 Heat of formation + Delta-G solvation = -70.801469 kcal Electronic energy + Delta-G solvation = -18875.484074 eV Core-core repulsion = 15973.088599 eV Total energy + Delta-G solvation = -2902.395475 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 261.119 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -39.17690 -37.87566 -37.64302 -36.63595 -34.45604 -33.52701 -30.89866 -28.56596 -26.44642 -24.51932 -23.26012 -23.09591 -20.92399 -20.18678 -18.95071 -18.15689 -17.41755 -16.85271 -16.47616 -16.26512 -15.49039 -15.28630 -14.92152 -14.48168 -14.26211 -14.04836 -13.69769 -13.58851 -13.05025 -12.92594 -12.76391 -12.64186 -12.63207 -12.54422 -12.48216 -12.25045 -12.13340 -12.06623 -11.91289 -11.51695 -11.46534 -11.08271 -10.86594 -10.72137 -9.53907 -8.12938 -5.87952 -0.36889 1.49822 1.51112 1.59263 2.18593 2.57270 2.87818 2.99129 3.26876 3.44746 3.58937 3.73825 3.90901 4.09740 4.21757 4.29916 4.44749 4.50574 4.57828 4.68089 4.76745 4.77969 4.81227 4.87793 4.99719 5.04804 5.07723 5.26388 5.30012 5.33385 5.36893 5.52639 5.66306 6.01178 6.54173 7.14691 7.50296 8.88822 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.026852 B = 0.006690 C = 0.006213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.495763 B = 4184.606802 C = 4505.781172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.099 3.901 3 N -0.863 5.863 4 C -0.312 4.312 5 H 0.090 0.910 6 C -0.009 4.009 7 N -0.898 5.898 8 Si 0.974 3.026 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.259 1.259 12 S 2.557 3.443 13 O -1.015 7.015 14 O -1.012 7.012 15 C -0.590 4.590 16 C -0.053 4.053 17 H 0.069 0.931 18 C -0.179 4.179 19 C -0.148 4.148 20 C -0.187 4.187 21 C -0.168 4.168 22 H 0.058 0.942 23 H 0.052 0.948 24 H 0.072 0.928 25 H 0.088 0.912 26 H 0.054 0.946 27 H 0.266 0.734 28 H 0.150 0.850 29 H 0.142 0.858 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.048 0.952 33 H 0.119 0.881 34 H 0.088 0.912 35 H 0.108 0.892 36 H 0.112 0.888 37 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.826 5.927 9.607 15.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.027 4.027 3 N -0.694 5.694 4 C -0.445 4.445 5 H 0.108 0.892 6 C -0.212 4.212 7 N -0.539 5.539 8 Si 0.798 3.202 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.184 1.184 12 S 2.661 3.339 13 O -1.006 7.006 14 O -1.002 7.002 15 C -0.722 4.722 16 C -0.073 4.073 17 H 0.087 0.913 18 C -0.236 4.236 19 C -0.168 4.168 20 C -0.224 4.224 21 C -0.205 4.205 22 H 0.076 0.924 23 H 0.071 0.929 24 H 0.090 0.910 25 H 0.106 0.894 26 H 0.072 0.928 27 H 0.075 0.925 28 H 0.168 0.832 29 H 0.160 0.840 30 H 0.097 0.903 31 H 0.105 0.895 32 H 0.067 0.933 33 H 0.137 0.863 34 H 0.107 0.893 35 H 0.126 0.874 36 H 0.131 0.869 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -9.845 5.776 9.974 15.158 hybrid contribution -0.190 0.162 -1.120 1.147 sum -10.034 5.938 8.854 14.640 Atomic orbital electron populations 1.22120 0.95475 1.01982 1.01741 1.21368 0.94235 0.83848 1.03280 1.52700 1.77798 1.21063 1.17812 1.19226 1.45668 0.94057 0.85585 0.89245 1.26102 0.94960 0.97264 1.02888 1.70098 1.35462 1.18468 1.29833 0.85298 0.79375 0.77977 0.77562 1.19824 1.21045 1.18399 1.06646 0.78129 0.74582 0.74495 1.93410 1.60099 1.64467 1.82591 1.93391 1.83632 1.54171 1.68970 1.30456 1.21314 1.13143 1.07322 1.20510 0.98470 0.96954 0.91354 0.91273 1.22291 1.02715 0.99112 0.99449 1.22181 0.97914 0.93387 1.03270 1.23163 1.03789 0.93767 1.01697 1.23074 1.04205 1.02908 0.90328 0.92350 0.92889 0.90952 0.89437 0.92754 0.92462 0.83178 0.84022 0.90322 0.89485 0.93276 0.86337 0.89336 0.87359 0.86924 0.88526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.42 10.21 71.98 0.73 -4.68 16 2 C 0.10 4.56 5.98 86.38 0.52 5.08 16 3 N -0.86 -42.59 2.78 -343.47 -0.95 -43.54 16 4 C -0.31 -16.56 8.78 84.03 0.74 -15.82 16 5 H 0.09 4.58 7.94 -2.91 -0.02 4.56 16 6 C -0.01 -0.49 4.98 84.86 0.42 -0.07 16 7 N -0.90 -50.66 11.28 21.65 0.24 -50.42 16 8 Si 0.97 41.56 29.62 68.60 2.03 43.60 16 9 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 10 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 11 H -0.26 -10.31 7.11 99.48 0.71 -9.61 16 12 S 2.56 115.58 5.04 -56.49 -0.28 115.29 16 13 O -1.02 -54.33 17.22 -127.65 -2.20 -56.53 16 14 O -1.01 -48.71 14.28 -127.65 -1.82 -50.54 16 15 C -0.59 -18.45 5.60 71.98 0.40 -18.04 16 16 C -0.05 -1.46 2.54 -10.79 -0.03 -1.48 16 17 H 0.07 2.03 7.90 -2.39 -0.02 2.02 16 18 C -0.18 -4.80 8.72 71.98 0.63 -4.17 16 19 C -0.15 -3.14 5.15 -10.79 -0.06 -3.19 16 20 C -0.19 -3.58 10.18 30.59 0.31 -3.27 16 21 C -0.17 -2.88 9.73 30.59 0.30 -2.58 16 22 H 0.06 1.73 6.98 -2.39 -0.02 1.72 16 23 H 0.05 1.92 8.14 -2.39 -0.02 1.91 16 24 H 0.07 2.16 8.14 -2.39 -0.02 2.15 16 25 H 0.09 4.53 5.31 -2.39 -0.01 4.52 16 26 H 0.05 2.48 6.81 -2.39 -0.02 2.46 16 27 H 0.27 14.15 8.31 -92.71 -0.77 13.38 16 28 H 0.15 3.96 6.98 -2.39 -0.02 3.94 16 29 H 0.14 4.14 8.14 -2.39 -0.02 4.12 16 30 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.09 1.88 7.29 -2.39 -0.02 1.86 16 32 H 0.05 1.61 5.61 -2.39 -0.01 1.60 16 33 H 0.12 2.25 8.11 -2.39 -0.02 2.23 16 34 H 0.09 1.82 8.05 -2.39 -0.02 1.80 16 35 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.10 1.62 7.61 -2.39 -0.02 1.60 16 Total: -1.00 -69.24 309.14 2.03 -67.22 By element: Atomic # 1 Polarization: 22.11 SS G_CDS: 1.04 Total: 23.16 kcal Atomic # 6 Polarization: -52.20 SS G_CDS: 3.97 Total: -48.23 kcal Atomic # 7 Polarization: -93.25 SS G_CDS: -0.71 Total: -93.96 kcal Atomic # 8 Polarization: -103.04 SS G_CDS: -4.02 Total: -107.07 kcal Atomic # 14 Polarization: 41.56 SS G_CDS: 2.03 Total: 43.60 kcal Atomic # 16 Polarization: 115.58 SS G_CDS: -0.28 Total: 115.29 kcal Total: -69.24 2.03 -67.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001309102772.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.585 kcal (2) G-P(sol) polarization free energy of solvation -69.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds