Wall clock time and date at job start Mon Mar 30 2020 00:48:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46504 * 109.47015 * 2 1 4 4 C 1.36930 * 120.00099 * 95.54585 * 3 2 1 5 5 H 1.07997 * 120.00110 * 169.97637 * 4 3 2 6 6 C 1.38810 * 120.00168 * 349.97440 * 4 3 2 7 7 N 1.31620 * 120.00174 * 332.08634 * 6 4 3 8 8 Si 1.86796 * 120.00074 * 152.07968 * 6 4 3 9 9 H 1.48501 * 109.47723 * 265.21232 * 8 6 4 10 10 H 1.48502 * 109.46943 * 145.21174 * 8 6 4 11 11 H 1.48506 * 109.47109 * 25.21574 * 8 6 4 12 12 C 1.46506 * 119.99707 * 275.54297 * 3 2 1 13 13 C 1.52996 * 109.47454 * 269.99755 * 12 3 2 14 14 H 1.08997 * 109.38468 * 304.79572 * 13 12 3 15 15 C 1.52584 * 109.38666 * 185.00198 * 13 12 3 16 16 C 1.52591 * 110.64444 * 169.85854 * 15 13 12 17 17 C 1.53037 * 109.98460 * 69.98654 * 16 15 13 18 18 S 1.81675 * 108.99986 * 296.35486 * 17 16 15 19 19 O 1.42097 * 108.66424 * 168.63049 * 18 17 16 20 20 O 1.42106 * 108.65986 * 299.97128 * 18 17 16 21 21 C 1.53046 * 109.38063 * 64.47573 * 13 12 3 22 22 H 1.09001 * 109.46693 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47174 * 299.99693 * 1 2 3 24 24 H 1.08996 * 109.47256 * 60.00083 * 1 2 3 25 25 H 1.09001 * 109.47174 * 240.00307 * 2 1 3 26 26 H 1.08996 * 109.47256 * 119.99917 * 2 1 3 27 27 H 0.96995 * 120.00281 * 179.97438 * 7 6 4 28 28 H 1.09001 * 109.47217 * 30.00334 * 12 3 2 29 29 H 1.09000 * 109.46587 * 149.99609 * 12 3 2 30 30 H 1.09007 * 109.24008 * 290.15933 * 15 13 12 31 31 H 1.09000 * 109.24179 * 49.59890 * 15 13 12 32 32 H 1.08996 * 109.38404 * 190.14289 * 16 15 13 33 33 H 1.08994 * 109.38348 * 309.83247 * 16 15 13 34 34 H 1.08995 * 109.55331 * 56.20644 * 17 16 15 35 35 H 1.09001 * 109.55205 * 176.40313 * 17 16 15 36 36 H 1.08998 * 109.55054 * 303.66478 * 21 13 12 37 37 H 1.09006 * 109.54322 * 63.95312 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3546 1.9886 1.1803 5 1 2.8638 2.9409 1.1717 6 6 2.0409 1.3803 2.3879 7 7 1.0046 0.5728 2.4685 8 14 3.0895 1.7074 3.8987 9 1 4.1156 0.6419 4.0294 10 1 2.2271 1.7151 5.1076 11 1 3.7595 3.0256 3.7603 12 6 2.1469 2.1127 -1.2629 13 6 3.5453 1.8889 -1.8419 14 1 4.2931 2.1707 -1.1007 15 6 3.7202 2.7487 -3.0902 16 6 5.1759 2.7428 -3.5478 17 6 5.5429 1.3663 -4.1069 18 16 5.4167 0.1350 -2.7770 19 8 5.4971 -1.1629 -3.3499 20 8 6.3160 0.4949 -1.7373 21 6 3.7173 0.4101 -2.1968 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 0.7856 0.1474 3.3122 28 1 1.3991 1.7522 -1.9693 29 1 1.9940 3.1769 -1.0835 30 1 3.0910 2.3550 -3.8886 31 1 3.4186 3.7720 -2.8667 32 1 5.3145 3.4967 -4.3227 33 1 5.8222 2.9734 -2.7010 34 1 4.8565 1.1049 -4.9122 35 1 6.5631 1.3884 -4.4898 36 1 3.5297 -0.2011 -1.3141 37 1 3.0145 0.1402 -2.9852 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322277731.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:20 Heat of formation + Delta-G solvation = -75.124627 kcal Electronic energy + Delta-G solvation = -19057.258748 eV Core-core repulsion = 16154.675806 eV Total energy + Delta-G solvation = -2902.582941 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 261.119 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.24549 -37.97483 -37.03248 -36.90375 -33.82089 -32.34617 -30.94086 -28.66616 -27.33968 -25.30663 -23.26425 -22.11559 -21.19592 -19.69849 -18.55816 -17.54758 -17.28806 -16.98962 -16.59284 -16.04574 -15.65988 -15.38271 -14.84490 -14.48337 -14.14783 -13.83531 -13.73370 -13.45395 -13.33495 -13.13208 -13.02244 -12.76496 -12.58391 -12.42967 -12.25473 -12.16119 -12.13447 -11.86201 -11.59320 -11.51408 -11.34765 -11.21354 -10.80116 -10.33429 -8.75412 -7.80517 -5.08675 -0.82113 1.44574 1.51243 1.55470 1.85979 2.54779 2.80305 3.07805 3.26410 3.62378 3.76816 3.86328 3.91930 4.02029 4.23742 4.36414 4.60682 4.68837 4.75220 4.82991 4.88664 4.99815 5.04367 5.05991 5.15003 5.20857 5.26237 5.37426 5.44099 5.57941 5.65148 5.76928 6.21132 6.37756 7.25029 7.98240 8.37225 9.20627 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.023439 B = 0.006875 C = 0.006562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.312756 B = 4071.710487 C = 4265.908188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.163 3.837 3 N -0.610 5.610 4 C -0.252 4.252 5 H 0.073 0.927 6 C -0.049 4.049 7 N -0.911 5.911 8 Si 0.937 3.063 9 H -0.299 1.299 10 H -0.298 1.298 11 H -0.272 1.272 12 C 0.156 3.844 13 C -0.095 4.095 14 H 0.062 0.938 15 C -0.130 4.130 16 C -0.111 4.111 17 C -0.572 4.572 18 S 2.399 3.601 19 O -0.992 6.992 20 O -0.990 6.990 21 C -0.585 4.585 22 H 0.030 0.970 23 H 0.063 0.937 24 H 0.028 0.972 25 H 0.040 0.960 26 H 0.039 0.961 27 H 0.244 0.756 28 H 0.059 0.941 29 H 0.052 0.948 30 H 0.100 0.900 31 H 0.092 0.908 32 H 0.117 0.883 33 H 0.068 0.932 34 H 0.167 0.833 35 H 0.150 0.850 36 H 0.114 0.886 37 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.921 4.134 -16.706 17.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.038 3.962 3 N -0.332 5.332 4 C -0.382 4.382 5 H 0.091 0.909 6 C -0.244 4.244 7 N -0.558 5.558 8 Si 0.767 3.233 9 H -0.227 1.227 10 H -0.226 1.226 11 H -0.197 1.197 12 C 0.029 3.971 13 C -0.117 4.117 14 H 0.081 0.919 15 C -0.167 4.167 16 C -0.149 4.149 17 C -0.705 4.705 18 S 2.589 3.411 19 O -0.990 6.990 20 O -0.988 6.988 21 C -0.715 4.715 22 H 0.049 0.951 23 H 0.082 0.918 24 H 0.047 0.953 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.054 0.946 28 H 0.077 0.923 29 H 0.070 0.930 30 H 0.118 0.882 31 H 0.111 0.889 32 H 0.135 0.865 33 H 0.087 0.913 34 H 0.185 0.815 35 H 0.168 0.832 36 H 0.132 0.868 37 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 5.524 3.410 -16.251 17.499 hybrid contribution -0.161 0.147 1.350 1.367 sum 5.362 3.558 -14.901 16.231 Atomic orbital electron populations 1.22211 0.98747 0.98789 1.00628 1.20726 0.93039 0.84989 0.97482 1.44330 1.75908 1.10684 1.02265 1.19491 1.29555 1.04513 0.84686 0.90925 1.25230 0.98417 1.01494 0.99309 1.70291 1.24605 1.36141 1.24792 0.85689 0.79235 0.77682 0.80667 1.22715 1.22556 1.19670 1.20921 0.93762 0.95677 0.86698 1.21513 1.01656 0.90068 0.98479 0.91928 1.21747 0.96819 1.01792 0.96385 1.21358 0.96709 0.94340 1.02500 1.29986 1.13253 1.11183 1.16070 1.08216 0.78350 0.76625 0.77905 1.93502 1.87012 1.39196 1.79240 1.93517 1.62866 1.85117 1.57259 1.30259 1.22433 1.06348 1.12501 0.95050 0.91781 0.95339 0.94222 0.94224 0.94627 0.92253 0.93000 0.88187 0.88940 0.86477 0.91279 0.81542 0.83173 0.86758 0.82495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.44 9.75 71.98 0.70 -5.74 16 2 C 0.16 7.51 4.80 86.38 0.41 7.93 16 3 N -0.61 -28.19 2.34 -702.00 -1.65 -29.83 16 4 C -0.25 -13.37 9.66 84.03 0.81 -12.56 16 5 H 0.07 3.78 7.97 -2.91 -0.02 3.75 16 6 C -0.05 -2.71 4.78 84.86 0.41 -2.31 16 7 N -0.91 -51.85 8.69 21.65 0.19 -51.66 16 8 Si 0.94 45.59 29.63 68.60 2.03 47.62 16 9 H -0.30 -14.94 7.11 99.48 0.71 -14.23 16 10 H -0.30 -14.58 7.11 99.48 0.71 -13.87 16 11 H -0.27 -12.70 7.11 99.48 0.71 -12.00 16 12 C 0.16 5.40 5.15 86.38 0.45 5.84 16 13 C -0.09 -2.65 2.22 -10.92 -0.02 -2.68 16 14 H 0.06 2.12 8.01 -2.39 -0.02 2.10 16 15 C -0.13 -2.19 4.93 30.32 0.15 -2.04 16 16 C -0.11 -1.59 5.73 30.47 0.17 -1.42 16 17 C -0.57 -7.96 6.35 71.99 0.46 -7.51 16 18 S 2.40 63.24 5.31 -56.49 -0.30 62.94 16 19 O -0.99 -32.23 18.10 -127.40 -2.31 -34.54 16 20 O -0.99 -35.87 17.93 -127.40 -2.28 -38.15 16 21 C -0.58 -15.82 4.80 72.00 0.35 -15.47 16 22 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 23 H 0.06 3.35 6.04 -2.39 -0.01 3.33 16 24 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 25 H 0.04 1.58 5.69 -2.39 -0.01 1.57 16 26 H 0.04 2.12 6.11 -2.39 -0.01 2.11 16 27 H 0.24 13.74 8.31 -92.71 -0.77 12.97 16 28 H 0.06 1.82 8.07 -2.39 -0.02 1.80 16 29 H 0.05 1.78 7.99 -2.39 -0.02 1.76 16 30 H 0.10 1.15 8.09 -2.38 -0.02 1.13 16 31 H 0.09 1.44 8.06 -2.39 -0.02 1.42 16 32 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.07 1.25 8.01 -2.39 -0.02 1.23 16 34 H 0.17 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.15 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.11 3.92 5.47 -2.39 -0.01 3.91 16 37 H 0.16 3.06 8.14 -2.38 -0.02 3.04 16 Total: -1.00 -74.04 298.18 0.61 -73.43 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: 1.04 Total: 6.12 kcal Atomic # 6 Polarization: -39.82 SS G_CDS: 3.88 Total: -35.94 kcal Atomic # 7 Polarization: -80.04 SS G_CDS: -1.46 Total: -81.50 kcal Atomic # 8 Polarization: -68.10 SS G_CDS: -4.59 Total: -72.69 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.62 kcal Atomic # 16 Polarization: 63.24 SS G_CDS: -0.30 Total: 62.94 kcal Total: -74.04 0.61 -73.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322277731.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.690 kcal (2) G-P(sol) polarization free energy of solvation -74.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds