Wall clock time and date at job start Mon Mar 30 2020 00:39:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 H 1.08991 * 109.47023 * 2 1 4 4 C 1.50696 * 109.46761 * 120.00060 * 2 1 3 5 5 H 1.08000 * 120.00180 * 120.00329 * 4 2 1 6 6 C 1.37879 * 119.99846 * 299.99341 * 4 2 1 7 7 N 1.31521 * 119.99974 * 180.02562 * 6 4 2 8 8 Si 1.86799 * 120.00341 * 0.02562 * 6 4 2 9 9 H 1.48495 * 109.47242 * 89.99531 * 8 6 4 10 10 H 1.48493 * 109.47189 * 209.99766 * 8 6 4 11 11 H 1.48503 * 109.46849 * 329.99712 * 8 6 4 12 12 N 1.46895 * 109.46670 * 239.99577 * 2 1 3 13 13 C 1.46901 * 110.99983 * 85.00704 * 12 2 1 14 14 C 1.52998 * 109.47298 * 179.97438 * 13 12 2 15 15 C 1.52999 * 109.47175 * 179.97438 * 14 13 12 16 16 H 1.09006 * 109.63902 * 54.57459 * 15 14 13 17 17 C 1.54365 * 109.50087 * 294.27352 * 15 14 13 18 18 C 1.55047 * 106.38236 * 193.07369 * 17 15 14 19 19 S 1.83286 * 102.73715 * 42.38950 * 18 17 15 20 20 O 1.42105 * 109.35476 * 90.09483 * 19 18 17 21 21 O 1.42104 * 109.35148 * 223.29038 * 19 18 17 22 22 C 1.54166 * 109.64558 * 174.99854 * 15 14 13 23 23 H 1.09000 * 109.46668 * 300.00137 * 1 2 3 24 24 H 1.08993 * 109.46790 * 60.00101 * 1 2 3 25 25 H 1.09001 * 109.47062 * 179.97438 * 1 2 3 26 26 H 0.96997 * 119.99802 * 180.02562 * 7 6 4 27 27 H 1.00898 * 111.00956 * 321.04749 * 12 2 1 28 28 H 1.08993 * 109.47488 * 59.99304 * 13 12 2 29 29 H 1.09006 * 109.47062 * 299.99350 * 13 12 2 30 30 H 1.09006 * 109.46969 * 59.99850 * 14 13 12 31 31 H 1.08996 * 109.47021 * 299.99811 * 14 13 12 32 32 H 1.09000 * 110.26480 * 73.79497 * 17 15 14 33 33 H 1.09001 * 110.03061 * 312.22382 * 17 15 14 34 34 H 1.09002 * 110.78973 * 284.02460 * 18 17 15 35 35 H 1.09006 * 110.78878 * 160.75393 * 18 17 15 36 36 H 1.08994 * 110.32126 * 28.73227 * 22 15 14 37 37 H 1.08997 * 110.40692 * 266.57840 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1314 6 6 1.6993 -0.2392 2.4827 7 7 2.1380 -0.8590 3.5566 8 14 0.6250 1.2792 2.6541 9 1 -0.8026 0.8730 2.6997 10 1 0.9761 1.9952 3.9067 11 1 0.8474 2.1766 1.4920 12 7 2.0197 -0.6926 -1.1994 13 6 2.0826 0.2225 -2.3469 14 6 2.5962 -0.5330 -3.5741 15 6 2.6611 0.4199 -4.7694 16 1 3.2593 1.2933 -4.5095 17 6 1.2333 0.8647 -5.1519 18 6 1.3433 1.5385 -6.5439 19 16 2.4828 0.4209 -7.4449 20 8 1.7293 -0.5843 -8.1091 21 8 3.4269 1.1963 -8.1708 22 6 3.2953 -0.3028 -5.9745 23 1 -0.3633 0.5139 0.8900 24 1 -0.3632 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.9034 -0.5277 4.4375 27 1 1.4496 -1.4980 -1.4100 28 1 2.7589 1.0460 -2.1182 29 1 1.0871 0.6162 -2.5526 30 1 1.9200 -1.3568 -3.8029 31 1 3.5916 -0.9265 -3.3682 32 1 0.8515 1.5777 -4.4212 33 1 0.5746 -0.0020 -5.2077 34 1 1.7697 2.5379 -6.4574 35 1 0.3702 1.5758 -7.0338 36 1 3.0972 -1.3732 -5.9211 37 1 4.3691 -0.1183 -6.0062 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330674607.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:39:41 Heat of formation + Delta-G solvation = -76.072631 kcal Electronic energy + Delta-G solvation = -17809.730573 eV Core-core repulsion = 14907.106524 eV Total energy + Delta-G solvation = -2902.624050 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 261.119 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -38.12166 -37.27500 -36.28546 -36.02445 -32.78920 -31.37677 -30.01823 -27.59341 -25.15144 -24.43869 -22.46821 -20.66639 -20.11624 -19.09469 -17.13961 -16.81350 -16.56115 -15.91778 -15.30789 -14.99364 -14.74691 -14.40313 -14.11889 -13.57137 -13.26033 -12.82955 -12.67815 -12.44060 -12.37284 -12.28951 -12.21650 -12.09163 -11.77912 -11.34575 -11.20969 -11.03607 -10.95130 -10.66183 -10.53556 -10.25243 -10.16603 -9.53038 -9.19644 -8.60460 -7.48839 -6.07977 -4.05613 -0.21644 2.25095 3.21608 3.30642 3.31330 3.34744 3.70385 4.07406 4.25204 4.29762 4.36494 4.50975 4.62592 4.89775 5.11897 5.14968 5.22125 5.30400 5.34794 5.50568 5.60427 5.67836 5.73666 5.87943 6.13367 6.17721 6.25990 6.33877 6.45753 6.69283 7.06057 7.66613 7.86003 8.26446 8.65653 9.03316 9.54452 11.05642 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.050992 B = 0.003663 C = 0.003565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.974706 B = 7642.134460 C = 7851.933811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.182 3.818 3 H 0.033 0.967 4 C -0.500 4.500 5 H 0.081 0.919 6 C 0.067 3.933 7 N -0.901 5.901 8 Si 0.887 3.113 9 H -0.281 1.281 10 H -0.296 1.296 11 H -0.270 1.270 12 N -0.674 5.674 13 C 0.053 3.947 14 C -0.108 4.108 15 C -0.082 4.082 16 H 0.095 0.905 17 C -0.120 4.120 18 C -0.588 4.588 19 S 2.384 3.616 20 O -0.941 6.941 21 O -0.945 6.945 22 C -0.585 4.585 23 H 0.045 0.955 24 H 0.025 0.975 25 H 0.054 0.946 26 H 0.263 0.737 27 H 0.331 0.669 28 H 0.067 0.933 29 H 0.021 0.979 30 H 0.066 0.934 31 H 0.080 0.920 32 H 0.101 0.899 33 H 0.088 0.912 34 H 0.136 0.864 35 H 0.135 0.865 36 H 0.139 0.861 37 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.710 4.550 -19.709 20.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.073 3.927 3 H 0.051 0.949 4 C -0.538 4.538 5 H 0.099 0.901 6 C -0.135 4.135 7 N -0.539 5.539 8 Si 0.718 3.282 9 H -0.208 1.208 10 H -0.224 1.224 11 H -0.196 1.196 12 N -0.303 5.303 13 C -0.077 4.077 14 C -0.146 4.146 15 C -0.102 4.102 16 H 0.113 0.887 17 C -0.158 4.158 18 C -0.718 4.718 19 S 2.569 3.431 20 O -0.938 6.938 21 O -0.942 6.942 22 C -0.715 4.715 23 H 0.063 0.937 24 H 0.044 0.956 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.148 0.852 28 H 0.085 0.915 29 H 0.039 0.961 30 H 0.084 0.916 31 H 0.099 0.901 32 H 0.119 0.881 33 H 0.107 0.893 34 H 0.154 0.846 35 H 0.153 0.847 36 H 0.157 0.843 37 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -0.889 4.473 -20.341 20.846 hybrid contribution -1.767 1.096 0.924 2.275 sum -2.657 5.568 -19.417 20.373 Atomic orbital electron populations 1.22858 1.01541 1.00893 0.98819 1.19640 0.88519 0.95074 0.89424 0.94920 1.20993 1.31255 1.13791 0.87776 0.90055 1.24955 0.95997 0.96620 0.95891 1.69885 1.45849 1.40358 0.97853 0.86881 0.80566 0.83907 0.76856 1.20796 1.22399 1.19584 1.60590 1.58004 1.08864 1.02840 1.22032 0.98555 0.96268 0.90845 1.21637 1.03257 0.97301 0.92453 1.21675 0.94945 0.99341 0.94229 0.88689 1.22486 0.97525 1.01630 0.94168 1.30624 1.16486 1.14557 1.10100 1.09169 0.77855 0.77743 0.78377 1.93619 1.71008 1.57301 1.71888 1.93607 1.60920 1.70212 1.69447 1.30567 1.12642 1.12172 1.16106 0.93659 0.95583 0.92710 0.92664 0.85220 0.91499 0.96093 0.91577 0.90135 0.88089 0.89329 0.84551 0.84678 0.84266 0.84255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.74 8.64 37.16 0.32 -3.42 16 2 C 0.18 4.11 2.17 -68.86 -0.15 3.96 16 3 H 0.03 0.77 6.86 -51.93 -0.36 0.41 16 4 C -0.50 -13.81 9.42 -34.44 -0.32 -14.13 16 5 H 0.08 2.48 8.06 -52.49 -0.42 2.06 16 6 C 0.07 1.89 5.45 -17.82 -0.10 1.80 16 7 N -0.90 -27.31 13.96 55.43 0.77 -26.54 16 8 Si 0.89 21.51 24.37 -169.99 -4.14 17.36 16 9 H -0.28 -6.64 6.87 56.52 0.39 -6.25 16 10 H -0.30 -7.23 7.11 56.52 0.40 -6.83 16 11 H -0.27 -6.25 6.53 56.52 0.37 -5.88 16 12 N -0.67 -12.62 6.23 -107.96 -0.67 -13.29 16 13 C 0.05 0.75 5.29 -3.82 -0.02 0.73 16 14 C -0.11 -1.14 4.80 -26.73 -0.13 -1.27 16 15 C -0.08 -0.64 2.61 -89.30 -0.23 -0.87 16 16 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 17 C -0.12 -0.84 5.22 -24.93 -0.13 -0.97 16 18 C -0.59 -3.48 7.29 38.24 0.28 -3.20 16 19 S 2.38 19.19 6.11 -107.50 -0.66 18.53 16 20 O -0.94 -11.01 18.15 -57.71 -1.05 -12.06 16 21 O -0.94 -10.97 18.15 -57.71 -1.05 -12.01 16 22 C -0.58 -3.94 6.75 37.77 0.25 -3.68 16 23 H 0.04 0.99 3.27 -51.93 -0.17 0.82 16 24 H 0.03 0.45 7.45 -51.93 -0.39 0.06 16 25 H 0.05 1.09 8.13 -51.93 -0.42 0.67 16 26 H 0.26 7.49 8.31 -40.82 -0.34 7.16 16 27 H 0.33 5.79 8.47 -39.29 -0.33 5.46 16 28 H 0.07 0.98 8.05 -51.93 -0.42 0.57 16 29 H 0.02 0.28 6.24 -51.93 -0.32 -0.05 16 30 H 0.07 0.65 8.11 -51.93 -0.42 0.23 16 31 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.10 0.71 7.37 -51.93 -0.38 0.32 16 33 H 0.09 0.58 8.09 -51.93 -0.42 0.16 16 34 H 0.14 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.13 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.14 0.85 7.88 -51.93 -0.41 0.44 16 37 H 0.14 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 302.10 15.07 4.55 4.55 Total: -1.00 -35.40 302.10 -8.23 -43.63 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: -5.76 Total: 0.88 kcal Atomic # 6 Polarization: -20.82 SS G_CDS: -0.23 Total: -21.05 kcal Atomic # 7 Polarization: -39.94 SS G_CDS: 0.10 Total: -39.84 kcal Atomic # 8 Polarization: -21.98 SS G_CDS: -2.09 Total: -24.07 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.14 Total: 17.36 kcal Atomic # 16 Polarization: 19.19 SS G_CDS: -0.66 Total: 18.53 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -35.40 -8.23 -43.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330674607.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.443 kcal (2) G-P(sol) polarization free energy of solvation -35.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds