Wall clock time and date at job start Mon Mar 30 2020 00:38:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.46950 * 2 1 4 4 N 1.46898 * 109.46932 * 239.99840 * 2 1 3 5 5 C 1.46904 * 110.99632 * 85.00184 * 4 2 1 6 6 C 1.53004 * 109.46940 * 180.02562 * 5 4 2 7 7 C 1.50695 * 109.46979 * 180.02562 * 6 5 4 8 8 H 1.08002 * 120.00545 * 359.97438 * 7 6 5 9 9 C 1.37875 * 119.99879 * 179.97438 * 7 6 5 10 10 N 1.31514 * 120.00424 * 0.02562 * 9 7 6 11 11 Si 1.86806 * 120.00117 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47149 * 89.99714 * 11 9 7 13 13 H 1.48497 * 109.47521 * 210.00351 * 11 9 7 14 14 H 1.48503 * 109.47072 * 330.00009 * 11 9 7 15 15 C 1.53006 * 109.47110 * 120.00295 * 2 1 3 16 16 H 1.08999 * 110.05241 * 61.40228 * 15 2 1 17 17 C 1.53881 * 110.02534 * 299.99799 * 15 2 1 18 18 C 1.54164 * 108.70281 * 193.53013 * 17 15 2 19 19 S 1.82915 * 105.17474 * 27.85699 * 18 17 15 20 20 O 1.42106 * 109.35539 * 111.32536 * 19 18 17 21 21 O 1.42103 * 109.35557 * 244.52673 * 19 18 17 22 22 C 1.55049 * 110.02652 * 182.80881 * 15 2 1 23 23 H 1.09003 * 109.47074 * 180.02562 * 1 2 3 24 24 H 1.09006 * 109.47293 * 299.99631 * 1 2 3 25 25 H 1.08991 * 109.47420 * 59.99785 * 1 2 3 26 26 H 1.00900 * 111.00275 * 321.05233 * 4 2 1 27 27 H 1.08994 * 109.47119 * 299.99890 * 5 4 2 28 28 H 1.09000 * 109.47206 * 59.99832 * 5 4 2 29 29 H 1.09004 * 109.46951 * 299.99830 * 6 5 4 30 30 H 1.08992 * 109.47124 * 59.99790 * 6 5 4 31 31 H 0.96997 * 120.00374 * 180.02562 * 10 9 7 32 32 H 1.08993 * 109.64848 * 73.67807 * 17 15 2 33 33 H 1.09003 * 109.64556 * 313.38003 * 17 15 2 34 34 H 1.09002 * 110.31978 * 146.81226 * 18 17 15 35 35 H 1.08998 * 110.31660 * 268.90864 * 18 17 15 36 36 H 1.09001 * 110.78447 * 279.99332 * 22 15 2 37 37 H 1.09001 * 110.78842 * 43.26064 * 22 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6925 -1.1994 5 6 2.0824 0.2226 -2.3469 6 6 2.5949 -0.5332 -3.5745 7 6 2.6599 0.4058 -4.7514 8 1 2.3648 1.4382 -4.6356 9 6 3.0962 -0.0532 -5.9761 10 7 3.4551 -1.3105 -6.1175 11 14 3.1761 1.1105 -7.4353 12 1 4.5122 1.7570 -7.4802 13 1 2.9528 0.3477 -8.6897 14 1 2.1267 2.1519 -7.2959 15 6 2.0400 -0.7213 1.2493 16 1 1.7025 -1.7578 1.2463 17 6 1.5342 -0.0059 2.5143 18 6 2.3244 -0.5318 3.7290 19 16 3.9456 -1.0489 3.0582 20 8 4.9550 -0.1700 3.5357 21 8 4.0944 -2.4533 3.2161 22 6 3.5888 -0.6673 1.2985 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 1.4495 -1.4979 -1.4101 27 1 1.0871 0.6164 -2.5524 28 1 2.7588 1.0462 -2.1182 29 1 3.5903 -0.9272 -3.3691 30 1 1.9182 -1.3564 -3.8030 31 1 3.7624 -1.6333 -6.9790 32 1 0.4724 -0.2106 2.6513 33 1 1.6883 1.0685 2.4140 34 1 2.4551 0.2597 4.4670 35 1 1.8104 -1.3833 4.1751 36 1 4.0232 -1.4228 0.6437 37 1 3.9499 0.3263 1.0331 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001334983666.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:38:46 Heat of formation + Delta-G solvation = -116.292734 kcal Electronic energy + Delta-G solvation = -17869.027289 eV Core-core repulsion = 14964.659164 eV Total energy + Delta-G solvation = -2904.368124 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 261.119 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.38337 -38.00521 -37.00908 -36.50421 -34.91401 -32.41743 -30.51467 -29.51901 -26.09384 -25.74587 -23.34146 -22.42049 -21.02079 -19.69103 -18.52192 -17.65998 -17.31198 -16.74523 -16.53960 -16.08668 -15.78087 -15.43918 -15.25389 -14.67049 -14.28064 -14.14582 -13.87081 -13.35890 -13.18018 -13.10141 -13.02222 -12.86268 -12.82469 -12.73436 -12.52324 -12.37299 -12.06120 -11.92965 -11.59268 -11.53137 -11.34798 -11.10207 -10.99448 -10.56166 -9.16490 -8.20206 -6.31484 -0.79002 1.40487 1.41705 1.52446 1.72152 2.40388 2.75905 3.12604 3.13699 3.24278 3.62824 3.72590 4.00779 4.06211 4.14870 4.35474 4.38329 4.48869 4.58699 4.68220 4.77925 4.82327 4.94966 4.97361 5.10697 5.11746 5.18693 5.26374 5.40673 5.47466 5.70981 5.81225 6.17451 6.34582 6.62494 6.87068 7.38186 8.91805 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.032552 B = 0.003918 C = 0.003698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.965847 B = 7144.572596 C = 7569.872739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.094 3.906 3 H 0.081 0.919 4 N -0.694 5.694 5 C 0.087 3.913 6 C 0.030 3.970 7 C -0.544 4.544 8 H 0.060 0.940 9 C 0.001 3.999 10 N -0.932 5.932 11 Si 0.965 3.035 12 H -0.273 1.273 13 H -0.283 1.283 14 H -0.262 1.262 15 C -0.079 4.079 16 H 0.100 0.900 17 C -0.110 4.110 18 C -0.560 4.560 19 S 2.377 3.623 20 O -0.989 6.989 21 O -0.987 6.987 22 C -0.558 4.558 23 H 0.063 0.937 24 H 0.090 0.910 25 H 0.042 0.958 26 H 0.339 0.661 27 H 0.021 0.979 28 H 0.057 0.943 29 H -0.008 1.008 30 H -0.010 1.010 31 H 0.263 0.737 32 H 0.118 0.882 33 H 0.100 0.900 34 H 0.159 0.841 35 H 0.155 0.845 36 H 0.128 0.872 37 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.802 3.831 20.070 21.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.017 4.017 3 H 0.099 0.901 4 N -0.324 5.324 5 C -0.042 4.042 6 C -0.008 4.008 7 C -0.582 4.582 8 H 0.079 0.921 9 C -0.197 4.197 10 N -0.573 5.573 11 Si 0.789 3.211 12 H -0.199 1.199 13 H -0.208 1.208 14 H -0.186 1.186 15 C -0.099 4.099 16 H 0.118 0.882 17 C -0.149 4.149 18 C -0.693 4.693 19 S 2.568 3.432 20 O -0.986 6.986 21 O -0.984 6.984 22 C -0.689 4.689 23 H 0.082 0.918 24 H 0.109 0.891 25 H 0.061 0.939 26 H 0.157 0.843 27 H 0.039 0.961 28 H 0.075 0.925 29 H 0.010 0.990 30 H 0.009 0.991 31 H 0.072 0.928 32 H 0.136 0.864 33 H 0.119 0.881 34 H 0.177 0.823 35 H 0.173 0.827 36 H 0.146 0.854 37 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -6.202 3.407 20.586 21.768 hybrid contribution -1.052 0.450 -1.815 2.146 sum -7.255 3.857 18.770 20.490 Atomic orbital electron populations 1.22539 0.95693 1.02884 1.02990 1.21547 0.93552 0.97697 0.88872 0.90055 1.60526 1.57640 1.10029 1.04204 1.21739 0.97889 0.94789 0.89741 1.18937 0.94830 0.94818 0.92206 1.21633 1.43875 0.97029 0.95669 0.92132 1.25960 0.94828 0.96754 1.02178 1.70105 1.45311 1.16423 1.25423 0.85454 0.78857 0.78714 0.78039 1.19899 1.20828 1.18589 1.21924 0.90259 1.02354 0.95391 0.88216 1.22101 1.02709 1.02122 0.87939 1.30258 1.17147 1.13466 1.08418 1.09129 0.79506 0.74219 0.80357 1.93537 1.57779 1.67513 1.79791 1.93550 1.87183 1.31840 1.85808 1.30503 1.05137 1.12601 1.20706 0.91792 0.89086 0.93896 0.84277 0.96124 0.92486 0.98968 0.99150 0.92818 0.86356 0.88125 0.82260 0.82654 0.85351 0.84317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.11 8.85 71.98 0.64 -2.47 16 2 C 0.09 1.97 2.14 44.92 0.10 2.07 16 3 H 0.08 1.70 7.80 -2.39 -0.02 1.69 16 4 N -0.69 -21.33 5.95 -491.56 -2.92 -24.25 16 5 C 0.09 3.41 5.42 86.30 0.47 3.88 16 6 C 0.03 1.54 5.23 29.85 0.16 1.70 16 7 C -0.54 -30.60 9.11 25.60 0.23 -30.37 16 8 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 9 C 0.00 0.04 5.46 84.65 0.46 0.50 16 10 N -0.93 -56.87 13.29 21.45 0.28 -56.59 16 11 Si 0.96 43.94 29.54 68.60 2.03 45.97 16 12 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 13 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 14 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 15 C -0.08 -1.26 2.37 -9.79 -0.02 -1.28 16 16 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 17 C -0.11 -0.94 4.96 31.29 0.16 -0.78 16 18 C -0.56 -4.80 7.26 72.38 0.53 -4.28 16 19 S 2.38 45.43 6.12 -56.49 -0.35 45.08 16 20 O -0.99 -26.68 18.15 -127.49 -2.31 -29.00 16 21 O -0.99 -27.16 18.15 -127.49 -2.31 -29.47 16 22 C -0.56 -10.92 6.40 72.68 0.47 -10.45 16 23 H 0.06 1.03 8.13 -2.39 -0.02 1.01 16 24 H 0.09 0.99 6.81 -2.38 -0.02 0.97 16 25 H 0.04 0.90 7.45 -2.39 -0.02 0.88 16 26 H 0.34 10.30 8.47 -89.69 -0.76 9.54 16 27 H 0.02 0.78 7.44 -2.39 -0.02 0.77 16 28 H 0.06 2.23 8.06 -2.39 -0.02 2.21 16 29 H -0.01 -0.47 8.14 -2.38 -0.02 -0.49 16 30 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 31 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 32 H 0.12 0.54 7.29 -2.39 -0.02 0.52 16 33 H 0.10 0.64 8.10 -2.39 -0.02 0.62 16 34 H 0.16 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.16 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.13 3.00 8.14 -2.39 -0.02 2.98 16 37 H 0.14 2.60 8.10 -2.39 -0.02 2.58 16 Total: -1.00 -78.21 312.26 -2.12 -80.33 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: 0.29 Total: 9.43 kcal Atomic # 6 Polarization: -44.67 SS G_CDS: 3.18 Total: -41.49 kcal Atomic # 7 Polarization: -78.20 SS G_CDS: -2.64 Total: -80.84 kcal Atomic # 8 Polarization: -53.84 SS G_CDS: -4.63 Total: -58.47 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Atomic # 16 Polarization: 45.43 SS G_CDS: -0.35 Total: 45.08 kcal Total: -78.21 -2.12 -80.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334983666.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.964 kcal (2) G-P(sol) polarization free energy of solvation -78.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds