Wall clock time and date at job start Mon Mar 30 2020 00:31:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.62783 * 2 1 4 4 C 1.53246 * 109.79542 * 239.51211 * 2 1 3 5 5 N 1.46470 * 109.86381 * 178.19402 * 4 2 1 6 6 C 1.46899 * 110.99986 * 197.76290 * 5 4 2 7 7 C 1.52992 * 109.47294 * 309.15054 * 6 5 4 8 8 H 1.08994 * 109.47696 * 54.07210 * 7 6 5 9 9 O 1.42906 * 109.47024 * 294.07266 * 7 6 5 10 10 C 1.50699 * 109.47181 * 174.07594 * 7 6 5 11 11 H 1.08004 * 120.00075 * 0.02562 * 10 7 6 12 12 C 1.37881 * 119.99923 * 179.97438 * 10 7 6 13 13 N 1.31516 * 119.99528 * 180.02562 * 12 10 7 14 14 Si 1.86795 * 120.00196 * 0.02562 * 12 10 7 15 15 H 1.48496 * 109.47292 * 270.00049 * 14 12 10 16 16 H 1.48500 * 109.47111 * 150.00018 * 14 12 10 17 17 H 1.48498 * 109.46981 * 29.99953 * 14 12 10 18 18 C 1.46461 * 112.55782 * 72.65190 * 5 4 2 19 19 C 1.53253 * 109.86264 * 287.34714 * 18 5 4 20 20 H 1.09002 * 109.62782 * 302.29761 * 19 18 5 21 21 C 1.52998 * 109.63134 * 181.71064 * 19 18 5 22 22 S 1.81900 * 109.63212 * 120.39680 * 2 1 3 23 23 O 1.42095 * 109.46979 * 55.36860 * 22 2 1 24 24 H 1.09000 * 109.47143 * 299.59964 * 1 2 3 25 25 H 1.09001 * 109.47468 * 59.60034 * 1 2 3 26 26 H 1.09000 * 109.47109 * 179.60860 * 1 2 3 27 27 H 1.08998 * 109.40500 * 58.06972 * 4 2 1 28 28 H 1.09001 * 109.40565 * 298.31452 * 4 2 1 29 29 H 1.08997 * 109.46690 * 189.14614 * 6 5 4 30 30 H 1.09007 * 109.47086 * 69.14867 * 6 5 4 31 31 H 0.96695 * 113.99919 * 300.00325 * 9 7 6 32 32 H 0.97001 * 119.99851 * 180.02562 * 13 12 10 33 33 H 1.09001 * 109.40646 * 47.46878 * 18 5 4 34 34 H 1.08998 * 109.40782 * 167.30696 * 18 5 4 35 35 H 1.09000 * 109.47768 * 59.99483 * 21 19 18 36 36 H 1.08994 * 109.47210 * 179.97438 * 21 19 18 37 37 H 1.09012 * 109.47226 * 299.99856 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8961 1.0267 0.0000 4 6 2.0490 -0.7316 -1.2425 5 7 3.5130 -0.6952 -1.2663 6 6 4.0255 -0.9986 -2.6091 7 6 3.3815 -2.2884 -3.1213 8 1 2.2966 -2.1998 -3.0660 9 8 3.8112 -3.3878 -2.3158 10 6 3.7942 -2.5223 -4.5517 11 1 4.4505 -1.8213 -5.0459 12 6 3.3347 -3.6318 -5.2292 13 7 3.6953 -3.8361 -6.4773 14 14 2.2001 -4.8447 -4.3742 15 1 3.0106 -5.8952 -3.7073 16 1 1.3025 -5.4737 -5.3762 17 1 1.3853 -4.1295 -3.3595 18 6 4.1133 -1.5778 -0.2635 19 6 3.9240 -0.9814 1.1354 20 1 4.3687 0.0131 1.1727 21 6 4.5898 -1.8859 2.1743 22 16 2.1411 -0.8669 1.4778 23 8 1.5832 -2.1728 1.5254 24 1 -0.3633 0.5076 0.8936 25 1 -0.3634 0.5200 -0.8864 26 1 -0.3633 -1.0276 -0.0070 27 1 1.6600 -0.2460 -2.1375 28 1 1.7128 -1.7682 -1.2193 29 1 5.1072 -1.1251 -2.5651 30 1 3.7827 -0.1782 -3.2846 31 1 4.7682 -3.5264 -2.3176 32 1 3.3718 -4.6165 -6.9541 33 1 3.6338 -2.5557 -0.3082 34 1 5.1783 -1.6871 -0.4682 35 1 5.6548 -1.9668 1.9566 36 1 4.4540 -1.4591 3.1680 37 1 4.1354 -2.8761 2.1386 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001354697801.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:31:01 Heat of formation + Delta-G solvation = -86.075752 kcal Electronic energy + Delta-G solvation = -19141.151082 eV Core-core repulsion = 16238.093264 eV Total energy + Delta-G solvation = -2903.057818 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 261.119 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -38.67809 -35.68802 -35.38450 -34.05093 -32.35114 -32.31712 -28.78313 -26.64754 -25.91273 -23.28401 -21.67796 -21.21732 -19.95396 -17.57313 -17.41235 -15.88291 -15.57916 -15.52657 -14.95155 -14.81821 -14.33359 -13.77197 -13.60239 -13.26758 -12.92595 -12.82670 -12.60227 -12.30491 -12.20155 -12.08692 -11.67971 -11.46433 -11.15159 -11.04527 -10.92861 -10.89264 -10.72780 -10.46760 -9.99763 -9.54752 -9.47247 -8.89123 -8.72245 -8.07609 -7.55348 -6.20582 -4.32770 1.73826 2.66309 3.39539 3.43214 3.57344 3.87814 4.22444 4.43849 4.82444 4.91542 5.08579 5.08724 5.29042 5.33622 5.35476 5.58315 5.59134 5.66385 5.72562 5.78277 5.91366 6.04225 6.04957 6.06197 6.12258 6.17160 6.25687 6.42511 6.62573 7.07685 7.22224 7.48537 7.58978 8.18894 8.71940 8.88185 9.43135 10.89523 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.026535 B = 0.006895 C = 0.006607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.960403 B = 4059.958657 C = 4236.696233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.398 4.398 3 H 0.127 0.873 4 C 0.061 3.939 5 N -0.550 5.550 6 C 0.044 3.956 7 C 0.157 3.843 8 H 0.062 0.938 9 O -0.585 6.585 10 C -0.562 4.562 11 H 0.075 0.925 12 C 0.083 3.917 13 N -0.890 5.890 14 Si 0.914 3.086 15 H -0.279 1.279 16 H -0.304 1.304 17 H -0.272 1.272 18 C 0.060 3.940 19 C -0.400 4.400 20 H 0.124 0.876 21 C -0.128 4.128 22 S 1.225 4.775 23 O -0.845 6.845 24 H 0.064 0.936 25 H 0.066 0.934 26 H 0.058 0.942 27 H 0.079 0.921 28 H 0.046 0.954 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.359 0.641 32 H 0.266 0.734 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.064 0.936 36 H 0.062 0.938 37 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.344 10.710 17.968 20.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.516 4.516 3 H 0.145 0.855 4 C -0.068 4.068 5 N -0.273 5.273 6 C -0.084 4.084 7 C 0.098 3.902 8 H 0.079 0.921 9 O -0.392 6.392 10 C -0.600 4.600 11 H 0.093 0.907 12 C -0.121 4.121 13 N -0.527 5.527 14 Si 0.744 3.256 15 H -0.205 1.205 16 H -0.232 1.232 17 H -0.197 1.197 18 C -0.069 4.069 19 C -0.518 4.518 20 H 0.143 0.857 21 C -0.186 4.186 22 S 1.423 4.577 23 O -0.840 6.840 24 H 0.083 0.917 25 H 0.085 0.915 26 H 0.077 0.923 27 H 0.098 0.902 28 H 0.064 0.936 29 H 0.089 0.911 30 H 0.097 0.903 31 H 0.206 0.794 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.092 0.908 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.374 10.682 18.826 21.776 hybrid contribution 0.352 -2.429 -2.172 3.277 sum -2.023 8.253 16.655 18.697 Atomic orbital electron populations 1.21435 0.92056 1.02705 1.02606 1.27378 1.02152 1.09584 1.12470 0.85526 1.21971 0.88353 0.99078 0.97358 1.61519 1.05787 1.53279 1.06666 1.22815 0.99435 0.99047 0.87055 1.20628 0.95830 0.83195 0.90503 0.92086 1.86420 1.26947 1.54063 1.71738 1.21486 1.32370 1.10338 0.95787 0.90661 1.25023 0.95161 0.97648 0.94311 1.69956 1.44244 1.28420 1.10099 0.86252 0.80346 0.81145 0.77905 1.20452 1.23206 1.19676 1.22107 1.00968 0.95139 0.88695 1.27399 1.18392 1.05586 1.00423 0.85744 1.21417 1.01162 0.99181 0.96870 1.70032 0.86067 0.99295 1.02320 1.93126 1.71691 1.38718 1.80469 0.91720 0.91543 0.92260 0.90241 0.93603 0.91125 0.90265 0.79404 0.92459 0.91851 0.90805 0.91695 0.91867 0.92196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.50 9.20 37.16 0.34 -1.15 16 2 C -0.40 -4.95 3.31 -26.60 -0.09 -5.03 16 3 H 0.13 1.24 8.14 -51.93 -0.42 0.82 16 4 C 0.06 1.05 3.40 -3.93 -0.01 1.04 16 5 N -0.55 -9.32 4.59 -235.05 -1.08 -10.40 16 6 C 0.04 0.85 5.07 -3.83 -0.02 0.83 16 7 C 0.16 3.72 1.91 -27.89 -0.05 3.67 16 8 H 0.06 1.57 5.38 -51.93 -0.28 1.29 16 9 O -0.59 -13.76 8.46 -35.23 -0.30 -14.06 16 10 C -0.56 -15.74 9.34 -34.44 -0.32 -16.06 16 11 H 0.08 2.24 7.99 -52.48 -0.42 1.82 16 12 C 0.08 2.46 5.47 -17.82 -0.10 2.36 16 13 N -0.89 -27.41 13.96 55.43 0.77 -26.64 16 14 Si 0.91 24.36 26.18 -169.99 -4.45 19.91 16 15 H -0.28 -7.46 7.11 56.52 0.40 -7.06 16 16 H -0.30 -7.99 7.11 56.52 0.40 -7.59 16 17 H -0.27 -7.38 6.54 56.52 0.37 -7.01 16 18 C 0.06 0.97 3.80 -3.93 -0.01 0.95 16 19 C -0.40 -4.79 3.32 -26.60 -0.09 -4.88 16 20 H 0.12 1.19 8.14 -51.93 -0.42 0.76 16 21 C -0.13 -1.40 9.19 37.16 0.34 -1.06 16 22 S 1.23 14.53 12.61 -107.50 -1.36 13.17 16 23 O -0.84 -15.72 18.03 -35.23 -0.64 -16.35 16 24 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 25 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.08 1.37 7.91 -51.93 -0.41 0.96 16 28 H 0.05 0.97 6.99 -51.93 -0.36 0.61 16 29 H 0.07 1.33 7.71 -51.93 -0.40 0.93 16 30 H 0.08 1.55 8.14 -51.92 -0.42 1.13 16 31 H 0.36 7.48 9.04 45.56 0.41 7.89 16 32 H 0.27 7.71 8.31 -40.82 -0.34 7.37 16 33 H 0.06 1.27 6.29 -51.93 -0.33 0.94 16 34 H 0.07 1.15 7.69 -51.93 -0.40 0.75 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.06 0.80 8.13 -51.92 -0.42 0.38 16 LS Contribution 299.15 15.07 4.51 4.51 Total: -1.00 -36.35 299.15 -7.71 -44.05 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -5.16 Total: 5.14 kcal Atomic # 6 Polarization: -19.32 SS G_CDS: -0.01 Total: -19.33 kcal Atomic # 7 Polarization: -36.73 SS G_CDS: -0.30 Total: -37.03 kcal Atomic # 8 Polarization: -29.48 SS G_CDS: -0.93 Total: -30.42 kcal Atomic # 14 Polarization: 24.36 SS G_CDS: -4.45 Total: 19.91 kcal Atomic # 16 Polarization: 14.53 SS G_CDS: -1.36 Total: 13.17 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -36.35 -7.71 -44.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001354697801.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.023 kcal (2) G-P(sol) polarization free energy of solvation -36.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds