Wall clock time and date at job start Mon Mar 30 2020 00:31:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.62783 * 2 1 4 4 C 1.53246 * 109.79542 * 239.51211 * 2 1 3 5 5 N 1.46470 * 109.86381 * 178.19402 * 4 2 1 6 6 C 1.46899 * 110.99986 * 197.76290 * 5 4 2 7 7 C 1.52992 * 109.47294 * 309.15054 * 6 5 4 8 8 H 1.08994 * 109.47696 * 54.07210 * 7 6 5 9 9 O 1.42906 * 109.47024 * 294.07266 * 7 6 5 10 10 C 1.50699 * 109.47181 * 174.07594 * 7 6 5 11 11 H 1.08004 * 120.00075 * 0.02562 * 10 7 6 12 12 C 1.37881 * 119.99923 * 179.97438 * 10 7 6 13 13 N 1.31516 * 119.99528 * 180.02562 * 12 10 7 14 14 Si 1.86795 * 120.00196 * 0.02562 * 12 10 7 15 15 H 1.48496 * 109.47292 * 270.00049 * 14 12 10 16 16 H 1.48500 * 109.47111 * 150.00018 * 14 12 10 17 17 H 1.48498 * 109.46981 * 29.99953 * 14 12 10 18 18 C 1.46461 * 112.55782 * 72.65190 * 5 4 2 19 19 C 1.53253 * 109.86264 * 287.34714 * 18 5 4 20 20 H 1.09002 * 109.62782 * 302.29761 * 19 18 5 21 21 C 1.52998 * 109.63134 * 181.71064 * 19 18 5 22 22 S 1.81900 * 109.63212 * 120.39680 * 2 1 3 23 23 O 1.42095 * 109.46979 * 55.36860 * 22 2 1 24 24 H 1.09000 * 109.47143 * 299.59964 * 1 2 3 25 25 H 1.09001 * 109.47468 * 59.60034 * 1 2 3 26 26 H 1.09000 * 109.47109 * 179.60860 * 1 2 3 27 27 H 1.08998 * 109.40500 * 58.06972 * 4 2 1 28 28 H 1.09001 * 109.40565 * 298.31452 * 4 2 1 29 29 H 1.08997 * 109.46690 * 189.14614 * 6 5 4 30 30 H 1.09007 * 109.47086 * 69.14867 * 6 5 4 31 31 H 0.96695 * 113.99919 * 300.00325 * 9 7 6 32 32 H 0.97001 * 119.99851 * 180.02562 * 13 12 10 33 33 H 1.09001 * 109.40646 * 47.46878 * 18 5 4 34 34 H 1.08998 * 109.40782 * 167.30696 * 18 5 4 35 35 H 1.09000 * 109.47768 * 59.99483 * 21 19 18 36 36 H 1.08994 * 109.47210 * 179.97438 * 21 19 18 37 37 H 1.09012 * 109.47226 * 299.99856 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8961 1.0267 0.0000 4 6 2.0490 -0.7316 -1.2425 5 7 3.5130 -0.6952 -1.2663 6 6 4.0255 -0.9986 -2.6091 7 6 3.3815 -2.2884 -3.1213 8 1 2.2966 -2.1998 -3.0660 9 8 3.8112 -3.3878 -2.3158 10 6 3.7942 -2.5223 -4.5517 11 1 4.4505 -1.8213 -5.0459 12 6 3.3347 -3.6318 -5.2292 13 7 3.6953 -3.8361 -6.4773 14 14 2.2001 -4.8447 -4.3742 15 1 3.0106 -5.8952 -3.7073 16 1 1.3025 -5.4737 -5.3762 17 1 1.3853 -4.1295 -3.3595 18 6 4.1133 -1.5778 -0.2635 19 6 3.9240 -0.9814 1.1354 20 1 4.3687 0.0131 1.1727 21 6 4.5898 -1.8859 2.1743 22 16 2.1411 -0.8669 1.4778 23 8 1.5832 -2.1728 1.5254 24 1 -0.3633 0.5076 0.8936 25 1 -0.3634 0.5200 -0.8864 26 1 -0.3633 -1.0276 -0.0070 27 1 1.6600 -0.2460 -2.1375 28 1 1.7128 -1.7682 -1.2193 29 1 5.1072 -1.1251 -2.5651 30 1 3.7827 -0.1782 -3.2846 31 1 4.7682 -3.5264 -2.3176 32 1 3.3718 -4.6165 -6.9541 33 1 3.6338 -2.5557 -0.3082 34 1 5.1783 -1.6871 -0.4682 35 1 5.6548 -1.9668 1.9566 36 1 4.4540 -1.4591 3.1680 37 1 4.1354 -2.8761 2.1386 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001354697801.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:31:01 Heat of formation + Delta-G solvation = -117.440996 kcal Electronic energy + Delta-G solvation = -19142.511181 eV Core-core repulsion = 16238.093264 eV Total energy + Delta-G solvation = -2904.417917 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 261.119 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.20856 -37.37527 -36.71668 -35.09169 -34.59914 -33.59739 -30.54927 -27.87508 -27.53715 -24.78355 -23.19528 -22.30365 -21.52698 -19.55765 -18.65272 -17.15971 -16.97113 -16.96502 -16.84095 -16.37092 -15.93592 -15.36122 -15.22398 -14.74607 -14.37428 -14.08551 -13.87641 -13.59167 -13.40864 -13.28879 -13.24724 -13.06860 -12.91151 -12.72094 -12.30311 -12.07432 -12.02014 -11.94242 -11.92173 -11.56521 -11.03595 -10.89722 -10.60243 -9.34053 -9.02238 -8.51617 -6.64481 0.75297 1.21140 1.22994 1.38933 1.67598 2.19717 2.69827 2.82265 2.99832 3.67218 3.78714 3.80993 4.02336 4.09476 4.17991 4.23847 4.36885 4.39962 4.55963 4.62101 4.70930 4.82297 4.88392 4.94308 5.00131 5.07206 5.15515 5.19489 5.23335 5.28117 5.29890 5.82477 5.95288 6.03372 6.48422 6.95430 7.15657 8.62146 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.026535 B = 0.006895 C = 0.006607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.960403 B = 4059.958657 C = 4236.696233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.394 4.394 3 H 0.170 0.830 4 C 0.058 3.942 5 N -0.528 5.528 6 C 0.053 3.947 7 C 0.164 3.836 8 H 0.040 0.960 9 O -0.591 6.591 10 C -0.559 4.559 11 H 0.053 0.947 12 C 0.040 3.960 13 N -0.927 5.927 14 Si 0.966 3.034 15 H -0.278 1.278 16 H -0.295 1.295 17 H -0.285 1.285 18 C 0.055 3.945 19 C -0.394 4.394 20 H 0.167 0.833 21 C -0.130 4.130 22 S 1.289 4.711 23 O -0.916 6.916 24 H 0.105 0.895 25 H 0.073 0.927 26 H 0.023 0.977 27 H 0.074 0.926 28 H -0.005 1.005 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.372 0.628 32 H 0.270 0.730 33 H 0.019 0.981 34 H 0.082 0.918 35 H 0.076 0.924 36 H 0.100 0.900 37 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.839 12.899 20.240 24.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.512 4.512 3 H 0.187 0.813 4 C -0.071 4.071 5 N -0.250 5.250 6 C -0.075 4.075 7 C 0.106 3.894 8 H 0.058 0.942 9 O -0.399 6.399 10 C -0.597 4.597 11 H 0.072 0.928 12 C -0.161 4.161 13 N -0.566 5.566 14 Si 0.795 3.205 15 H -0.204 1.204 16 H -0.223 1.223 17 H -0.211 1.211 18 C -0.074 4.074 19 C -0.513 4.513 20 H 0.185 0.815 21 C -0.189 4.189 22 S 1.489 4.511 23 O -0.912 6.912 24 H 0.124 0.876 25 H 0.091 0.909 26 H 0.043 0.957 27 H 0.092 0.908 28 H 0.013 0.987 29 H 0.100 0.900 30 H 0.099 0.901 31 H 0.220 0.780 32 H 0.079 0.921 33 H 0.038 0.962 34 H 0.100 0.900 35 H 0.094 0.906 36 H 0.119 0.881 37 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -1.873 12.865 21.113 24.795 hybrid contribution 0.255 -3.066 -2.898 4.227 sum -1.619 9.798 18.215 20.747 Atomic orbital electron populations 1.21521 0.91386 1.01173 1.05077 1.27494 1.02913 1.11179 1.09606 0.81255 1.22026 0.88353 0.96849 0.99842 1.61680 1.05605 1.52452 1.05297 1.22623 0.99736 0.96524 0.88641 1.20462 0.95042 0.85431 0.88498 0.94218 1.86384 1.28123 1.54170 1.71219 1.21812 1.30989 1.09229 0.97678 0.92842 1.25630 0.96455 0.99280 0.94753 1.70030 1.45920 1.29447 1.11247 0.85442 0.78888 0.79411 0.76739 1.20385 1.22269 1.21112 1.22185 1.00797 0.93431 0.90973 1.27478 1.18470 1.07714 0.97650 0.81533 1.21488 1.01356 0.97438 0.98568 1.69158 0.84974 0.96273 1.00720 1.93006 1.73855 1.42252 1.82086 0.87607 0.90854 0.95746 0.90797 0.98666 0.89992 0.90115 0.78014 0.92104 0.96238 0.89960 0.90558 0.88088 0.95518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.82 9.20 71.98 0.66 -2.16 16 2 C -0.39 -8.79 3.31 30.68 0.10 -8.69 16 3 H 0.17 2.42 8.14 -2.39 -0.02 2.40 16 4 C 0.06 1.97 3.40 86.47 0.29 2.27 16 5 N -0.53 -17.08 4.59 -897.55 -4.12 -21.20 16 6 C 0.05 2.02 5.07 86.30 0.44 2.46 16 7 C 0.16 7.92 1.91 29.85 0.06 7.97 16 8 H 0.04 2.11 5.38 -2.39 -0.01 2.10 16 9 O -0.59 -28.15 8.46 -148.98 -1.26 -29.41 16 10 C -0.56 -31.79 9.34 25.60 0.24 -31.55 16 11 H 0.05 3.23 7.99 -2.91 -0.02 3.21 16 12 C 0.04 2.39 5.47 84.66 0.46 2.85 16 13 N -0.93 -57.91 13.96 21.45 0.30 -57.61 16 14 Si 0.97 51.38 26.18 68.60 1.80 53.17 16 15 H -0.28 -14.65 7.11 99.48 0.71 -13.95 16 16 H -0.30 -15.16 7.11 99.48 0.71 -14.45 16 17 H -0.29 -15.70 6.54 99.48 0.65 -15.05 16 18 C 0.05 1.69 3.80 86.47 0.33 2.02 16 19 C -0.39 -8.18 3.32 30.68 0.10 -8.08 16 20 H 0.17 2.18 8.14 -2.39 -0.02 2.16 16 21 C -0.13 -2.48 9.19 71.98 0.66 -1.82 16 22 S 1.29 27.71 12.61 -56.49 -0.71 27.00 16 23 O -0.92 -34.34 18.03 -148.98 -2.69 -37.02 16 24 H 0.11 1.37 8.14 -2.39 -0.02 1.36 16 25 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 26 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.07 2.54 7.91 -2.39 -0.02 2.52 16 28 H 0.00 -0.22 6.99 -2.39 -0.02 -0.24 16 29 H 0.08 2.97 7.71 -2.39 -0.02 2.95 16 30 H 0.08 3.09 8.14 -2.38 -0.02 3.07 16 31 H 0.37 15.48 9.04 -74.06 -0.67 14.81 16 32 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 33 H 0.02 0.79 6.29 -2.39 -0.02 0.77 16 34 H 0.08 2.39 7.69 -2.39 -0.02 2.37 16 35 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.03 0.68 8.13 -2.38 -0.02 0.66 16 Total: -1.00 -82.51 299.15 -3.01 -85.52 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: 0.33 Total: 14.28 kcal Atomic # 6 Polarization: -38.07 SS G_CDS: 3.35 Total: -34.72 kcal Atomic # 7 Polarization: -74.99 SS G_CDS: -3.82 Total: -78.81 kcal Atomic # 8 Polarization: -62.49 SS G_CDS: -3.95 Total: -66.43 kcal Atomic # 14 Polarization: 51.38 SS G_CDS: 1.80 Total: 53.17 kcal Atomic # 16 Polarization: 27.71 SS G_CDS: -0.71 Total: 27.00 kcal Total: -82.51 -3.01 -85.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001354697801.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.922 kcal (2) G-P(sol) polarization free energy of solvation -82.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds