Wall clock time and date at job start Mon Mar 30 2020 00:51:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42898 * 109.47038 * 2 1 4 4 C 1.35911 * 116.99967 * 180.02562 * 3 2 1 5 5 C 1.38913 * 119.96852 * 359.71821 * 4 3 2 6 6 C 1.38297 * 120.29853 * 179.76351 * 5 4 3 7 7 C 1.37924 * 120.23266 * 0.52248 * 6 5 4 8 8 C 1.39870 * 119.93537 * 359.73548 * 7 6 5 9 9 C 1.47157 * 120.14722 * 180.02562 * 8 7 6 10 10 C 1.34977 * 119.99536 * 131.94882 * 9 8 7 11 11 C 1.46233 * 120.00122 * 348.74363 * 10 9 8 12 12 O 1.21751 * 120.00280 * 353.30346 * 11 10 9 13 13 N 1.34777 * 119.99701 * 173.30985 * 11 10 9 14 14 C 1.36716 * 119.99757 * 180.02562 * 13 11 10 15 15 H 1.07998 * 120.00226 * 359.97438 * 14 13 11 16 16 C 1.39128 * 119.99771 * 179.97438 * 14 13 11 17 17 N 1.31323 * 119.99526 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 120.00127 * 359.97438 * 16 14 13 19 19 H 1.48498 * 109.46931 * 90.00002 * 18 16 14 20 20 H 1.48501 * 109.47074 * 210.00091 * 18 16 14 21 21 H 1.48499 * 109.47094 * 330.00026 * 18 16 14 22 22 C 1.38368 * 119.97327 * 180.02562 * 4 3 2 23 23 H 1.08996 * 109.46697 * 59.99824 * 1 2 3 24 24 H 1.08996 * 109.47212 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47051 * 300.00111 * 1 2 3 26 26 H 1.09001 * 109.47051 * 239.99889 * 2 1 3 27 27 H 1.09000 * 109.47089 * 119.99886 * 2 1 3 28 28 H 1.08003 * 119.85472 * 0.02984 * 5 4 3 29 29 H 1.08001 * 119.88742 * 180.25989 * 6 5 4 30 30 H 1.07998 * 120.03491 * 179.76788 * 7 6 5 31 31 H 1.07996 * 120.00425 * 311.94452 * 9 8 7 32 32 H 1.08000 * 119.99814 * 168.75456 * 10 9 8 33 33 H 0.97003 * 120.00317 * 359.97438 * 13 11 10 34 34 H 0.96999 * 119.99694 * 180.02562 * 17 16 14 35 35 H 1.07998 * 120.11300 * 359.97438 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3537 1.5254 -0.0005 5 6 4.1994 0.4233 0.0049 6 6 5.5714 0.5965 -0.0006 7 6 6.1111 1.8658 -0.0006 8 6 5.2688 2.9824 -0.0006 9 6 5.8396 4.3388 -0.0011 10 6 5.3808 5.2636 -0.8707 11 6 4.5017 4.8627 -1.9683 12 8 4.2814 3.6827 -2.1719 13 7 3.9355 5.7994 -2.7548 14 6 3.1133 5.4246 -3.7807 15 1 2.9177 4.3779 -3.9612 16 6 2.5284 6.3916 -4.5921 17 7 1.7381 6.0315 -5.5773 18 14 2.8660 8.2020 -4.2795 19 1 4.0574 8.6250 -5.0585 20 1 1.6894 9.0047 -4.6995 21 1 3.1196 8.4155 -2.8320 22 6 3.8820 2.8042 0.0000 23 1 -0.3632 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8934 -0.5139 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 3.7835 -0.5735 0.0090 29 1 6.2227 -0.2650 -0.0006 30 1 7.1830 1.9974 -0.0010 31 1 6.6254 4.5943 0.6942 32 1 5.6631 6.2997 -0.7558 33 1 4.1109 6.7396 -2.5924 34 1 1.3306 6.7056 -6.1433 35 1 3.2254 3.6617 0.0004 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001611113563.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:08 Heat of formation + Delta-G solvation = -23.019513 kcal Electronic energy + Delta-G solvation = -19006.143552 eV Core-core repulsion = 15970.376107 eV Total energy + Delta-G solvation = -3035.767445 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 261.115 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.72075 -38.47864 -36.99665 -34.21878 -32.83700 -31.77314 -31.72731 -29.38640 -28.88631 -25.47729 -23.78845 -22.47838 -21.73369 -20.47558 -19.09997 -18.23830 -17.13398 -16.01307 -15.80444 -15.70006 -15.29380 -14.89251 -14.01611 -13.63189 -13.51701 -13.17632 -13.05264 -12.86009 -12.78739 -12.47737 -12.24934 -11.93245 -11.62843 -11.37665 -11.26119 -11.11918 -10.62504 -10.53188 -10.37268 -10.03505 -9.65207 -9.31083 -8.60604 -8.23020 -7.64877 -7.50625 -6.40880 -3.81588 1.30792 2.03728 2.37209 3.01779 3.05269 3.11846 3.57102 4.04060 4.28354 4.34702 4.77900 5.03640 5.06808 5.17546 5.28590 5.31134 5.32124 5.46548 5.57574 5.69083 5.71563 5.88361 5.90964 6.00890 6.07228 6.15505 6.49787 6.62366 6.71957 6.82912 6.89755 7.10702 7.28791 7.52715 7.90859 8.14193 8.56222 8.91880 9.38210 9.89352 10.71337 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.018502 B = 0.006020 C = 0.004855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.961059 B = 4649.662187 C = 5765.576566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.316 6.316 4 C 0.120 3.880 5 C -0.210 4.210 6 C -0.097 4.097 7 C -0.147 4.147 8 C -0.001 4.001 9 C -0.084 4.084 10 C -0.168 4.168 11 C 0.454 3.546 12 O -0.564 6.564 13 N -0.572 5.572 14 C -0.294 4.294 15 H 0.122 0.878 16 C 0.040 3.960 17 N -0.869 5.869 18 Si 0.881 3.119 19 H -0.269 1.269 20 H -0.275 1.275 21 H -0.267 1.267 22 C -0.069 4.069 23 H 0.068 0.932 24 H 0.073 0.927 25 H 0.063 0.937 26 H 0.058 0.942 27 H 0.055 0.945 28 H 0.117 0.883 29 H 0.115 0.885 30 H 0.116 0.884 31 H 0.127 0.873 32 H 0.118 0.882 33 H 0.371 0.629 34 H 0.276 0.724 35 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.302 -5.984 12.810 14.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.018 4.018 3 O -0.230 6.230 4 C 0.076 3.924 5 C -0.229 4.229 6 C -0.115 4.115 7 C -0.165 4.165 8 C -0.002 4.002 9 C -0.106 4.106 10 C -0.189 4.189 11 C 0.244 3.756 12 O -0.448 6.448 13 N -0.208 5.208 14 C -0.423 4.423 15 H 0.140 0.860 16 C -0.164 4.164 17 N -0.508 5.508 18 Si 0.707 3.293 19 H -0.194 1.194 20 H -0.200 1.200 21 H -0.193 1.193 22 C -0.088 4.088 23 H 0.087 0.913 24 H 0.092 0.908 25 H 0.083 0.917 26 H 0.077 0.923 27 H 0.073 0.927 28 H 0.135 0.865 29 H 0.133 0.867 30 H 0.134 0.866 31 H 0.145 0.855 32 H 0.136 0.864 33 H 0.204 0.796 34 H 0.086 0.914 35 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 3.810 -6.548 12.428 14.555 hybrid contribution 0.258 1.347 -0.170 1.382 sum 4.068 -5.201 12.258 13.923 Atomic orbital electron populations 1.21764 0.93153 1.02340 1.03641 1.22662 0.95597 0.82741 1.00821 1.86089 1.19498 1.28357 1.89079 1.18724 0.81850 0.94031 0.97832 1.21090 0.94435 0.97278 1.10132 1.20585 0.94045 0.96773 1.00136 1.20971 0.98804 0.91893 1.04850 1.18499 0.92027 0.92758 0.96871 1.21986 0.98251 0.91932 0.98382 1.23224 1.00345 0.98872 0.96494 1.17804 0.85758 0.86535 0.85502 1.90780 1.64696 1.16465 1.72894 1.42271 1.42416 1.07264 1.28823 1.19532 1.20819 0.97278 1.04685 0.86004 1.25151 0.96568 0.98796 0.95923 1.69591 1.29400 1.34666 1.17131 0.86637 0.79143 0.84744 0.78798 1.19436 1.19997 1.19251 1.20303 0.93946 0.94432 1.00116 0.91272 0.90798 0.91749 0.92329 0.92673 0.86522 0.86667 0.86618 0.85513 0.86395 0.79640 0.91366 0.86093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 10.28 37.16 0.38 -1.34 16 2 C 0.06 0.78 5.46 37.16 0.20 0.98 16 3 O -0.32 -5.86 10.13 -19.46 -0.20 -6.06 16 4 C 0.12 2.31 6.68 -39.28 -0.26 2.04 16 5 C -0.21 -3.48 9.04 -39.31 -0.36 -3.83 16 6 C -0.10 -1.51 10.02 -39.67 -0.40 -1.91 16 7 C -0.15 -2.40 9.79 -39.09 -0.38 -2.79 16 8 C 0.00 -0.02 4.34 -105.08 -0.46 -0.48 16 9 C -0.08 -1.36 9.78 -37.12 -0.36 -1.72 16 10 C -0.17 -2.99 9.92 -37.53 -0.37 -3.36 16 11 C 0.45 10.67 6.90 -13.05 -0.09 10.58 16 12 O -0.56 -15.19 12.04 5.14 0.06 -15.13 16 13 N -0.57 -13.91 5.08 -12.31 -0.06 -13.97 16 14 C -0.29 -8.36 10.16 -15.04 -0.15 -8.51 16 15 H 0.12 3.97 7.38 -52.49 -0.39 3.59 16 16 C 0.04 1.10 5.50 -17.44 -0.10 1.00 16 17 N -0.87 -25.22 13.95 55.51 0.77 -24.44 16 18 Si 0.88 19.31 27.74 -169.99 -4.71 14.59 16 19 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 20 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 21 H -0.27 -5.37 6.52 56.52 0.37 -5.00 16 22 C -0.07 -1.40 6.72 -38.94 -0.26 -1.66 16 23 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 24 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.06 0.78 7.67 -51.93 -0.40 0.38 16 27 H 0.06 0.64 7.65 -51.93 -0.40 0.24 16 28 H 0.12 1.61 6.28 -52.48 -0.33 1.28 16 29 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 30 H 0.12 1.58 8.06 -52.49 -0.42 1.16 16 31 H 0.13 1.53 8.06 -52.49 -0.42 1.10 16 32 H 0.12 1.67 8.06 -52.49 -0.42 1.25 16 33 H 0.37 7.91 5.74 -40.82 -0.23 7.67 16 34 H 0.28 7.35 8.31 -40.82 -0.34 7.01 16 35 H 0.12 2.61 7.46 -52.49 -0.39 2.22 16 LS Contribution 301.39 15.07 4.54 4.54 Total: -1.00 -33.13 301.39 -6.47 -39.60 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: -4.26 Total: 11.87 kcal Atomic # 6 Polarization: -8.40 SS G_CDS: -2.60 Total: -11.00 kcal Atomic # 7 Polarization: -39.12 SS G_CDS: 0.71 Total: -38.41 kcal Atomic # 8 Polarization: -21.05 SS G_CDS: -0.14 Total: -21.19 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -4.71 Total: 14.59 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -33.13 -6.47 -39.60 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001611113563.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.577 kcal (2) G-P(sol) polarization free energy of solvation -33.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds