Wall clock time and date at job start Mon Mar 30 2020 00:51:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21257 * 120.00231 * 2 1 4 4 C 1.47167 * 119.99826 * 179.97438 * 2 1 3 5 5 C 1.39852 * 120.17095 * 179.97438 * 4 2 1 6 6 C 1.37888 * 119.82480 * 180.30289 * 5 4 2 7 7 C 1.38403 * 120.16897 * 359.44669 * 6 5 4 8 8 C 1.50700 * 119.82579 * 180.28177 * 7 6 5 9 9 C 1.53004 * 109.47321 * 270.27642 * 8 7 6 10 10 N 1.46495 * 109.47338 * 179.97438 * 9 8 7 11 11 C 1.34781 * 119.99998 * 179.97438 * 10 9 8 12 12 O 1.21689 * 119.99945 * 0.02562 * 11 10 9 13 13 C 1.46374 * 119.99951 * 180.02562 * 11 10 9 14 14 H 1.07994 * 119.99838 * 353.94220 * 13 11 10 15 15 C 1.40051 * 119.99886 * 173.94107 * 13 11 10 16 16 N 1.30679 * 119.99647 * 6.15023 * 15 13 11 17 17 Si 1.86801 * 119.99997 * 186.14941 * 15 13 11 18 18 H 1.48500 * 109.47073 * 94.98359 * 17 15 13 19 19 H 1.48498 * 109.46869 * 214.98272 * 17 15 13 20 20 H 1.48497 * 109.46897 * 334.98505 * 17 15 13 21 21 C 1.38410 * 120.35126 * 0.55654 * 7 6 5 22 22 C 1.37883 * 120.16936 * 359.72705 * 21 7 6 23 23 H 1.08998 * 109.47529 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47381 * 300.00688 * 1 2 3 25 25 H 1.09002 * 109.46700 * 59.99917 * 1 2 3 26 26 H 1.08002 * 120.09000 * 0.03348 * 5 4 2 27 27 H 1.07995 * 119.91637 * 179.72629 * 6 5 4 28 28 H 1.09000 * 109.47197 * 30.27946 * 8 7 6 29 29 H 1.09000 * 109.47575 * 150.27363 * 8 7 6 30 30 H 1.08995 * 109.46799 * 300.00119 * 9 8 7 31 31 H 1.08996 * 109.46587 * 59.99551 * 9 8 7 32 32 H 0.96997 * 120.00276 * 0.02562 * 10 9 8 33 33 H 0.97000 * 119.98794 * 180.02562 * 16 15 13 34 34 H 1.07997 * 119.91143 * 179.73917 * 21 7 6 35 35 H 1.07999 * 120.08880 * 179.97438 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0501 0.0000 4 6 2.2428 -1.2745 0.0006 5 6 3.6413 -1.2787 0.0000 6 6 4.3235 -2.4770 -0.0058 7 6 3.6277 -3.6735 0.0005 8 6 4.3812 -4.9786 0.0006 9 6 4.6357 -5.4207 -1.4419 10 7 5.3687 -6.6891 -1.4419 11 6 5.7048 -7.2732 -2.6091 12 8 5.3999 -6.7467 -3.6630 13 6 6.4367 -8.5409 -2.6091 14 1 6.7927 -8.9587 -1.6791 15 6 6.6751 -9.2118 -3.8151 16 7 6.3517 -8.6505 -4.9500 17 14 7.4554 -10.9090 -3.8013 18 1 6.3910 -11.9435 -3.8459 19 1 8.3395 -11.0569 -4.9852 20 1 8.2559 -11.0756 -2.5617 21 6 2.2437 -3.6777 0.0011 22 6 1.5471 -2.4878 0.0010 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 4.1856 -0.3459 -0.0003 27 1 5.4034 -2.4820 -0.0106 28 1 5.3338 -4.8483 0.5141 29 1 3.7923 -5.7382 0.5148 30 1 3.6831 -5.5511 -1.9554 31 1 5.2246 -4.6611 -1.9561 32 1 5.6114 -7.1090 -0.6019 33 1 6.5166 -9.1154 -5.7852 34 1 1.7080 -4.6155 0.0017 35 1 0.4671 -2.4926 0.0010 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001632599602.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:13 Heat of formation + Delta-G solvation = -64.042256 kcal Electronic energy + Delta-G solvation = -17976.385440 eV Core-core repulsion = 14938.839115 eV Total energy + Delta-G solvation = -3037.546325 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 261.115 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.18818 -38.59819 -37.27404 -34.49767 -32.64880 -32.11086 -31.33441 -30.13598 -28.16985 -26.16266 -23.76982 -22.70146 -21.60142 -19.89767 -19.69230 -17.39692 -17.00926 -15.98781 -15.52208 -15.22699 -15.18031 -14.73013 -14.55709 -14.21375 -13.90089 -13.73704 -13.61820 -12.95437 -12.46128 -12.41339 -12.22830 -12.14975 -11.65630 -11.36191 -11.26210 -11.09013 -11.04814 -10.62938 -10.45645 -10.22927 -9.94305 -9.11458 -8.85936 -8.84772 -7.63121 -7.53727 -6.20650 -4.65008 0.50270 1.27065 2.23400 3.13056 3.20198 3.23783 3.64920 3.84673 4.09464 4.54892 4.56259 4.58969 4.74843 4.82991 5.08467 5.11327 5.18161 5.22456 5.32471 5.45253 5.48735 5.61384 5.71057 5.78414 5.90357 5.91201 6.14432 6.26569 6.34376 6.53359 6.61159 6.77258 7.31054 7.42658 7.91067 8.06694 8.31461 9.01389 9.51429 10.58611 10.76983 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.052182 B = 0.003029 C = 0.003007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.454119 B = 9242.815530 C = 9309.579425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.397 3.603 3 O -0.466 6.466 4 C -0.186 4.186 5 C -0.058 4.058 6 C -0.128 4.128 7 C -0.034 4.034 8 C -0.099 4.099 9 C 0.140 3.860 10 N -0.769 5.769 11 C 0.554 3.446 12 O -0.581 6.581 13 C -0.547 4.547 14 H 0.068 0.932 15 C 0.087 3.913 16 N -0.768 5.768 17 Si 0.908 3.092 18 H -0.273 1.273 19 H -0.279 1.279 20 H -0.265 1.265 21 C -0.129 4.129 22 C -0.072 4.072 23 H 0.084 0.916 24 H 0.093 0.907 25 H 0.094 0.906 26 H 0.131 0.869 27 H 0.131 0.869 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.050 0.950 31 H 0.049 0.951 32 H 0.380 0.620 33 H 0.268 0.732 34 H 0.131 0.869 35 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.706 10.449 12.493 18.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.259 4.259 2 C 0.276 3.724 3 O -0.342 6.342 4 C -0.187 4.187 5 C -0.076 4.076 6 C -0.146 4.146 7 C -0.034 4.034 8 C -0.136 4.136 9 C 0.015 3.985 10 N -0.425 5.425 11 C 0.358 3.642 12 O -0.464 6.464 13 C -0.584 4.584 14 H 0.086 0.914 15 C -0.133 4.133 16 N -0.397 5.397 17 Si 0.733 3.267 18 H -0.198 1.198 19 H -0.205 1.205 20 H -0.189 1.189 21 C -0.147 4.147 22 C -0.090 4.090 23 H 0.103 0.897 24 H 0.111 0.889 25 H 0.112 0.888 26 H 0.149 0.851 27 H 0.148 0.852 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.212 0.788 33 H 0.079 0.921 34 H 0.149 0.851 35 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -9.626 11.393 11.485 18.825 hybrid contribution 0.429 -1.145 0.374 1.278 sum -9.197 10.248 11.859 18.173 Atomic orbital electron populations 1.22243 0.93962 1.04882 1.04841 1.22504 0.91617 0.87681 0.70548 1.90527 1.72147 1.34459 1.37084 1.20461 0.94666 0.94655 1.08921 1.21391 0.93130 0.98611 0.94491 1.21121 1.00553 0.91544 1.01413 1.20188 0.93885 0.95256 0.94108 1.20969 1.00258 0.93531 0.98889 1.20790 0.96759 0.88183 0.92777 1.46157 1.63161 1.23643 1.09570 1.18239 0.79498 0.85194 0.81291 1.90603 1.59056 1.65950 1.30779 1.20885 1.37882 1.05688 0.93913 0.91369 1.25720 0.93916 0.98662 0.94979 1.70037 1.35772 1.35892 0.97950 0.86354 0.79352 0.82502 0.78505 1.19807 1.20455 1.18892 1.21103 0.93734 0.98371 1.01522 1.21470 0.99932 0.91441 0.96130 0.89703 0.88874 0.88791 0.85067 0.85153 0.90291 0.90260 0.93209 0.93232 0.78834 0.92106 0.85118 0.84938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.35 10.19 36.00 0.37 -0.98 16 2 C 0.40 4.28 7.23 -30.69 -0.22 4.06 16 3 O -0.47 -6.55 17.09 5.58 0.10 -6.46 16 4 C -0.19 -2.09 5.87 -105.06 -0.62 -2.71 16 5 C -0.06 -0.70 9.60 -39.11 -0.38 -1.07 16 6 C -0.13 -1.55 9.68 -39.65 -0.38 -1.93 16 7 C -0.03 -0.41 5.14 -104.50 -0.54 -0.95 16 8 C -0.10 -1.29 5.45 -27.88 -0.15 -1.44 16 9 C 0.14 2.60 5.66 -4.04 -0.02 2.58 16 10 N -0.77 -16.84 5.55 -61.72 -0.34 -17.18 16 11 C 0.55 15.75 7.74 -12.99 -0.10 15.65 16 12 O -0.58 -18.99 15.05 5.20 0.08 -18.91 16 13 C -0.55 -15.38 9.53 -35.63 -0.34 -15.72 16 14 H 0.07 1.75 7.85 -52.49 -0.41 1.33 16 15 C 0.09 2.43 5.49 -17.36 -0.10 2.33 16 16 N -0.77 -23.10 11.85 55.55 0.66 -22.44 16 17 Si 0.91 20.02 29.56 -169.99 -5.03 14.99 16 18 H -0.27 -5.88 7.11 56.52 0.40 -5.47 16 19 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 20 H -0.26 -5.62 7.11 56.52 0.40 -5.22 16 21 C -0.13 -1.42 9.68 -39.65 -0.38 -1.80 16 22 C -0.07 -0.70 9.45 -39.11 -0.37 -1.07 16 23 H 0.08 0.41 5.61 -51.93 -0.29 0.12 16 24 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.13 1.51 7.65 -52.49 -0.40 1.11 16 27 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 28 H 0.08 0.95 8.08 -51.93 -0.42 0.53 16 29 H 0.08 0.93 8.08 -51.93 -0.42 0.51 16 30 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 31 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.38 7.13 8.45 -40.82 -0.35 6.78 16 33 H 0.27 7.30 8.29 -40.82 -0.34 6.96 16 34 H 0.13 1.25 8.06 -52.49 -0.42 0.82 16 35 H 0.13 0.88 5.93 -52.49 -0.31 0.57 16 LS Contribution 309.76 15.07 4.67 4.67 Total: -1.00 -36.21 309.76 -7.37 -43.58 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: -4.27 Total: 4.80 kcal Atomic # 6 Polarization: 0.17 SS G_CDS: -3.23 Total: -3.06 kcal Atomic # 7 Polarization: -39.93 SS G_CDS: 0.32 Total: -39.62 kcal Atomic # 8 Polarization: -25.54 SS G_CDS: 0.17 Total: -25.37 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.03 Total: 14.99 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -36.21 -7.37 -43.58 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001632599602.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.460 kcal (2) G-P(sol) polarization free energy of solvation -36.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds