Wall clock time and date at job start Mon Mar 30 2020 00:51:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21257 * 120.00231 * 2 1 4 4 C 1.47167 * 119.99826 * 179.97438 * 2 1 3 5 5 C 1.39852 * 120.17095 * 179.97438 * 4 2 1 6 6 C 1.37888 * 119.82480 * 180.30289 * 5 4 2 7 7 C 1.38403 * 120.16897 * 359.44669 * 6 5 4 8 8 C 1.50700 * 119.82579 * 180.28177 * 7 6 5 9 9 C 1.53004 * 109.47321 * 270.27642 * 8 7 6 10 10 N 1.46495 * 109.47338 * 179.97438 * 9 8 7 11 11 C 1.34781 * 119.99998 * 179.97438 * 10 9 8 12 12 O 1.21689 * 119.99945 * 0.02562 * 11 10 9 13 13 C 1.46374 * 119.99951 * 180.02562 * 11 10 9 14 14 H 1.07994 * 119.99838 * 353.94220 * 13 11 10 15 15 C 1.40051 * 119.99886 * 173.94107 * 13 11 10 16 16 N 1.30679 * 119.99647 * 6.15023 * 15 13 11 17 17 Si 1.86801 * 119.99997 * 186.14941 * 15 13 11 18 18 H 1.48500 * 109.47073 * 94.98359 * 17 15 13 19 19 H 1.48498 * 109.46869 * 214.98272 * 17 15 13 20 20 H 1.48497 * 109.46897 * 334.98505 * 17 15 13 21 21 C 1.38410 * 120.35126 * 0.55654 * 7 6 5 22 22 C 1.37883 * 120.16936 * 359.72705 * 21 7 6 23 23 H 1.08998 * 109.47529 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47381 * 300.00688 * 1 2 3 25 25 H 1.09002 * 109.46700 * 59.99917 * 1 2 3 26 26 H 1.08002 * 120.09000 * 0.03348 * 5 4 2 27 27 H 1.07995 * 119.91637 * 179.72629 * 6 5 4 28 28 H 1.09000 * 109.47197 * 30.27946 * 8 7 6 29 29 H 1.09000 * 109.47575 * 150.27363 * 8 7 6 30 30 H 1.08995 * 109.46799 * 300.00119 * 9 8 7 31 31 H 1.08996 * 109.46587 * 59.99551 * 9 8 7 32 32 H 0.96997 * 120.00276 * 0.02562 * 10 9 8 33 33 H 0.97000 * 119.98794 * 180.02562 * 16 15 13 34 34 H 1.07997 * 119.91143 * 179.73917 * 21 7 6 35 35 H 1.07999 * 120.08880 * 179.97438 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0501 0.0000 4 6 2.2428 -1.2745 0.0006 5 6 3.6413 -1.2787 0.0000 6 6 4.3235 -2.4770 -0.0058 7 6 3.6277 -3.6735 0.0005 8 6 4.3812 -4.9786 0.0006 9 6 4.6357 -5.4207 -1.4419 10 7 5.3687 -6.6891 -1.4419 11 6 5.7048 -7.2732 -2.6091 12 8 5.3999 -6.7467 -3.6630 13 6 6.4367 -8.5409 -2.6091 14 1 6.7927 -8.9587 -1.6791 15 6 6.6751 -9.2118 -3.8151 16 7 6.3517 -8.6505 -4.9500 17 14 7.4554 -10.9090 -3.8013 18 1 6.3910 -11.9435 -3.8459 19 1 8.3395 -11.0569 -4.9852 20 1 8.2559 -11.0756 -2.5617 21 6 2.2437 -3.6777 0.0011 22 6 1.5471 -2.4878 0.0010 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 4.1856 -0.3459 -0.0003 27 1 5.4034 -2.4820 -0.0106 28 1 5.3338 -4.8483 0.5141 29 1 3.7923 -5.7382 0.5148 30 1 3.6831 -5.5511 -1.9554 31 1 5.2246 -4.6611 -1.9561 32 1 5.6114 -7.1090 -0.6019 33 1 6.5166 -9.1154 -5.7852 34 1 1.7080 -4.6155 0.0017 35 1 0.4671 -2.4926 0.0010 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001632599602.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:13 Heat of formation + Delta-G solvation = -89.148213 kcal Electronic energy + Delta-G solvation = -17977.474116 eV Core-core repulsion = 14938.839115 eV Total energy + Delta-G solvation = -3038.635001 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 261.115 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.07252 -39.70357 -39.13758 -36.04032 -34.60522 -33.58976 -32.29163 -31.06267 -29.46516 -27.98295 -25.04454 -23.57386 -22.75028 -21.73483 -20.73758 -19.22256 -18.04437 -17.43048 -16.91621 -16.54613 -16.07911 -15.99276 -15.88779 -15.76542 -15.12928 -14.89628 -14.54114 -14.45161 -13.93449 -13.75923 -13.14515 -13.05874 -12.97604 -12.82052 -12.68929 -12.57630 -12.46166 -12.32274 -11.99261 -11.82692 -10.92974 -10.79848 -9.98247 -9.92811 -9.75456 -9.49804 -8.29968 -6.85147 -0.38990 0.40122 1.37371 1.41701 1.42621 1.58925 2.25522 2.47181 2.74500 3.07476 3.15046 3.60741 3.76032 3.92188 3.96997 4.10256 4.19584 4.22840 4.38361 4.50044 4.55493 4.64589 4.65772 4.88335 4.96599 5.08210 5.10517 5.11963 5.28629 5.33055 5.41516 5.59945 5.87809 5.90334 6.24196 6.26907 6.50230 6.87078 7.56045 8.49066 8.67277 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.052182 B = 0.003029 C = 0.003007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.454119 B = 9242.815530 C = 9309.579425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.396 3.604 3 O -0.508 6.508 4 C -0.197 4.197 5 C -0.076 4.076 6 C -0.138 4.138 7 C -0.050 4.050 8 C -0.080 4.080 9 C 0.143 3.857 10 N -0.755 5.755 11 C 0.535 3.465 12 O -0.636 6.636 13 C -0.573 4.573 14 H 0.091 0.909 15 C 0.026 3.974 16 N -0.824 5.824 17 Si 1.000 3.000 18 H -0.262 1.262 19 H -0.274 1.274 20 H -0.247 1.247 21 C -0.134 4.134 22 C -0.061 4.061 23 H 0.108 0.892 24 H 0.108 0.892 25 H 0.103 0.897 26 H 0.126 0.874 27 H 0.134 0.866 28 H 0.091 0.909 29 H 0.100 0.900 30 H 0.033 0.967 31 H 0.026 0.974 32 H 0.398 0.602 33 H 0.274 0.726 34 H 0.149 0.851 35 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.737 8.978 14.218 19.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C 0.278 3.722 3 O -0.388 6.388 4 C -0.198 4.198 5 C -0.094 4.094 6 C -0.156 4.156 7 C -0.051 4.051 8 C -0.117 4.117 9 C 0.018 3.982 10 N -0.410 5.410 11 C 0.339 3.661 12 O -0.523 6.523 13 C -0.610 4.610 14 H 0.109 0.891 15 C -0.189 4.189 16 N -0.453 5.453 17 Si 0.819 3.181 18 H -0.187 1.187 19 H -0.199 1.199 20 H -0.170 1.170 21 C -0.152 4.152 22 C -0.078 4.078 23 H 0.127 0.873 24 H 0.126 0.874 25 H 0.121 0.879 26 H 0.144 0.856 27 H 0.151 0.849 28 H 0.110 0.890 29 H 0.118 0.882 30 H 0.051 0.949 31 H 0.044 0.956 32 H 0.233 0.767 33 H 0.084 0.916 34 H 0.167 0.833 35 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -10.670 9.929 13.287 19.722 hybrid contribution 0.707 -0.600 -0.138 0.937 sum -9.963 9.329 13.149 18.952 Atomic orbital electron populations 1.22285 0.90277 1.06817 1.05899 1.23118 0.93568 0.86672 0.68807 1.90517 1.73360 1.35657 1.39255 1.20764 0.94503 0.95872 1.08660 1.21497 0.94088 0.98448 0.95388 1.21223 1.00943 0.91736 1.01675 1.20192 0.94719 0.94601 0.95561 1.20781 1.01585 0.94479 0.94888 1.20843 0.94853 0.86002 0.96466 1.45794 1.62219 1.24328 1.08658 1.18665 0.79554 0.85759 0.82075 1.90556 1.61200 1.67411 1.33179 1.21450 1.38203 1.06008 0.95328 0.89140 1.27028 0.93941 1.03819 0.94068 1.70209 1.37400 1.38553 0.99145 0.84972 0.78396 0.75469 0.79219 1.18707 1.19941 1.16989 1.21411 0.93283 0.99717 1.00758 1.21837 1.01750 0.90131 0.94127 0.87342 0.87411 0.87879 0.85611 0.84855 0.89034 0.88183 0.94888 0.95594 0.76744 0.91581 0.83315 0.81162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.06 10.19 71.23 0.73 -1.33 16 2 C 0.40 8.11 7.23 28.03 0.20 8.31 16 3 O -0.51 -14.44 17.09 -2.96 -0.05 -14.49 16 4 C -0.20 -4.21 5.87 -20.15 -0.12 -4.33 16 5 C -0.08 -1.85 9.60 22.58 0.22 -1.64 16 6 C -0.14 -3.34 9.68 22.23 0.22 -3.12 16 7 C -0.05 -1.18 5.14 -19.78 -0.10 -1.28 16 8 C -0.08 -1.98 5.45 29.85 0.16 -1.82 16 9 C 0.14 5.38 5.66 86.38 0.49 5.87 16 10 N -0.75 -33.08 5.55 -467.41 -2.59 -35.68 16 11 C 0.54 31.10 7.74 86.36 0.67 31.77 16 12 O -0.64 -43.24 15.05 -4.31 -0.06 -43.30 16 13 C -0.57 -32.26 9.53 24.83 0.24 -32.02 16 14 H 0.09 4.51 7.85 -2.91 -0.02 4.48 16 15 C 0.03 1.47 5.49 85.30 0.47 1.93 16 16 N -0.82 -50.70 11.85 21.84 0.26 -50.44 16 17 Si 1.00 40.54 29.56 68.60 2.03 42.57 16 18 H -0.26 -10.13 7.11 99.48 0.71 -9.43 16 19 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 20 H -0.25 -9.19 7.11 99.48 0.71 -8.49 16 21 C -0.13 -2.65 9.68 22.23 0.22 -2.43 16 22 C -0.06 -1.03 9.45 22.58 0.21 -0.82 16 23 H 0.11 0.59 5.61 -2.39 -0.01 0.58 16 24 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 25 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 26 H 0.13 3.09 7.65 -2.91 -0.02 3.07 16 27 H 0.13 2.99 8.06 -2.91 -0.02 2.97 16 28 H 0.09 2.05 8.08 -2.39 -0.02 2.03 16 29 H 0.10 2.08 8.08 -2.39 -0.02 2.07 16 30 H 0.03 1.34 8.14 -2.39 -0.02 1.33 16 31 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.40 14.45 8.45 -92.71 -0.78 13.67 16 33 H 0.27 15.25 8.29 -92.71 -0.77 14.49 16 34 H 0.15 2.38 8.06 -2.91 -0.02 2.36 16 35 H 0.17 1.49 5.93 -2.91 -0.02 1.48 16 Total: -1.00 -82.38 309.76 3.50 -78.88 By element: Atomic # 1 Polarization: 23.04 SS G_CDS: 0.33 Total: 23.37 kcal Atomic # 6 Polarization: -4.51 SS G_CDS: 3.59 Total: -0.91 kcal Atomic # 7 Polarization: -83.78 SS G_CDS: -2.34 Total: -86.12 kcal Atomic # 8 Polarization: -57.67 SS G_CDS: -0.12 Total: -57.79 kcal Atomic # 14 Polarization: 40.54 SS G_CDS: 2.03 Total: 42.57 kcal Total: -82.38 3.50 -78.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001632599602.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.268 kcal (2) G-P(sol) polarization free energy of solvation -82.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds