Wall clock time and date at job start Mon Mar 30 2020 00:13:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50696 * 120.00233 * 2 1 4 4 O 1.42904 * 109.47543 * 134.99710 * 3 2 1 5 5 N 1.41593 * 113.99928 * 180.02562 * 4 3 2 6 6 C 1.34779 * 119.99902 * 180.02562 * 5 4 3 7 7 O 1.21289 * 119.99765 * 359.97438 * 6 5 4 8 8 C 1.50698 * 120.00404 * 179.97438 * 6 5 4 9 9 H 1.09000 * 109.47069 * 300.00116 * 8 6 5 10 10 C 1.50702 * 109.47018 * 59.99275 * 8 6 5 11 11 H 1.07997 * 120.00304 * 235.33770 * 10 8 6 12 12 C 1.37879 * 119.99933 * 55.33892 * 10 8 6 13 13 N 1.31516 * 119.99735 * 1.96772 * 12 10 8 14 14 Si 1.86800 * 120.00111 * 181.96427 * 12 10 8 15 15 H 1.48500 * 109.47037 * 60.00267 * 14 12 10 16 16 H 1.48499 * 109.46987 * 179.97438 * 14 12 10 17 17 H 1.48494 * 109.47204 * 299.99860 * 14 12 10 18 18 C 1.50700 * 109.47580 * 179.97438 * 8 6 5 19 19 C 1.38238 * 119.99685 * 47.22350 * 18 8 6 20 20 C 1.38226 * 119.99901 * 180.02562 * 19 18 8 21 21 C 1.38242 * 120.00207 * 359.95957 * 20 19 18 22 22 C 1.38236 * 119.99836 * 359.97438 * 21 20 19 23 23 C 1.38232 * 120.00167 * 227.20237 * 18 8 6 24 24 H 1.08000 * 119.99760 * 180.02562 * 1 2 3 25 25 H 1.07991 * 119.99748 * 0.02562 * 1 2 3 26 26 H 1.08005 * 119.99813 * 179.97438 * 2 1 3 27 27 H 1.09000 * 109.47125 * 14.99655 * 3 2 1 28 28 H 1.08998 * 109.46739 * 255.00108 * 3 2 1 29 29 H 0.97004 * 120.00496 * 0.02562 * 5 4 3 30 30 H 0.97003 * 120.00319 * 179.97438 * 13 12 10 31 31 H 1.08002 * 119.99794 * 359.97438 * 19 18 8 32 32 H 1.08001 * 119.99981 * 179.97438 * 20 19 18 33 33 H 1.08000 * 119.99863 * 179.72257 * 21 20 19 34 34 H 1.07996 * 120.00326 * 179.97438 * 22 21 20 35 35 H 1.08001 * 120.00068 * 359.97438 * 23 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 8 3.1268 1.2413 0.9527 5 7 3.9006 2.4244 1.0321 6 6 4.9358 2.4961 1.8922 7 8 5.2042 1.5473 2.5985 8 6 5.7598 3.7550 1.9763 9 1 6.2098 3.9603 1.0050 10 6 4.8754 4.9086 2.3740 11 1 4.8324 5.7938 1.7569 12 6 4.1212 4.8339 3.5258 13 7 4.2030 3.7721 4.2976 14 14 2.9834 6.2408 3.9901 15 1 1.9782 6.4397 2.9154 16 1 2.2895 5.9169 5.2624 17 1 3.7776 7.4838 4.1614 18 6 6.8457 3.5768 3.0060 19 6 7.6175 2.4300 3.0052 20 6 8.6131 2.2663 3.9499 21 6 8.8377 3.2498 4.8951 22 6 8.0668 4.3973 4.8950 23 6 7.0703 4.5604 3.9510 24 1 -0.5400 -0.9353 0.0004 25 1 -0.5399 0.9353 -0.0004 26 1 1.8500 -0.9354 0.0004 27 1 1.3856 2.1160 0.2659 28 1 2.4755 1.4866 -0.9927 29 1 3.6858 3.1834 0.4675 30 1 3.6727 3.7197 5.1081 31 1 7.4419 1.6615 2.2669 32 1 9.2158 1.3701 3.9495 33 1 9.6127 3.1199 5.6360 34 1 8.2419 5.1655 5.6336 35 1 6.4678 5.4568 3.9511 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001635645664.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:13:39 Heat of formation + Delta-G solvation = 0.046233 kcal Electronic energy + Delta-G solvation = -19425.994217 eV Core-core repulsion = 16391.226978 eV Total energy + Delta-G solvation = -3034.767239 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 261.115 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.65299 -39.25111 -38.09484 -35.51474 -34.97772 -32.80716 -32.19760 -31.34253 -28.91606 -26.87401 -25.71118 -22.97677 -22.54383 -21.41506 -20.65989 -19.13245 -18.59988 -17.32107 -17.04816 -16.93658 -16.58827 -15.99539 -15.58813 -15.34372 -15.13512 -14.47680 -14.17814 -13.95192 -13.91824 -13.74418 -13.60745 -13.02404 -12.70317 -12.58661 -12.30553 -12.20307 -12.04182 -11.78409 -11.42741 -11.21310 -10.65734 -10.48563 -10.27899 -9.54719 -9.37038 -9.11645 -8.08312 -6.30850 0.78460 0.92454 1.04282 1.44375 1.46917 1.53533 1.58870 2.30419 2.46967 3.18661 3.31497 3.81840 4.02317 4.10321 4.31542 4.35456 4.37843 4.48465 4.52887 4.60478 4.70216 4.93268 4.96379 5.04603 5.15985 5.45011 5.54481 5.56206 5.65528 5.69428 5.89991 5.90966 5.97364 6.19995 6.40773 6.53390 6.69536 6.90721 7.39646 7.89163 8.90210 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.017737 B = 0.007260 C = 0.005541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.255538 B = 3855.956539 C = 5051.580871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.173 4.173 3 C 0.056 3.944 4 O -0.187 6.187 5 N -0.591 5.591 6 C 0.556 3.444 7 O -0.575 6.575 8 C 0.063 3.937 9 H 0.082 0.918 10 C -0.541 4.541 11 H 0.083 0.917 12 C 0.035 3.965 13 N -0.874 5.874 14 Si 0.946 3.054 15 H -0.266 1.266 16 H -0.300 1.300 17 H -0.263 1.263 18 C -0.038 4.038 19 C -0.119 4.119 20 C -0.147 4.147 21 C -0.139 4.139 22 C -0.152 4.152 23 C -0.083 4.083 24 H 0.128 0.872 25 H 0.108 0.892 26 H 0.116 0.884 27 H 0.066 0.934 28 H 0.084 0.916 29 H 0.415 0.585 30 H 0.257 0.743 31 H 0.098 0.902 32 H 0.129 0.871 33 H 0.139 0.861 34 H 0.129 0.871 35 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.495 -0.190 -7.228 7.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.192 4.192 3 C -0.020 4.020 4 O -0.191 6.191 5 N -0.296 5.296 6 C 0.346 3.654 7 O -0.452 6.452 8 C 0.042 3.958 9 H 0.100 0.900 10 C -0.579 4.579 11 H 0.101 0.899 12 C -0.170 4.170 13 N -0.508 5.508 14 Si 0.772 3.228 15 H -0.191 1.191 16 H -0.227 1.227 17 H -0.188 1.188 18 C -0.039 4.039 19 C -0.138 4.138 20 C -0.165 4.165 21 C -0.157 4.157 22 C -0.170 4.170 23 C -0.101 4.101 24 H 0.146 0.854 25 H 0.126 0.874 26 H 0.134 0.866 27 H 0.084 0.916 28 H 0.101 0.899 29 H 0.256 0.744 30 H 0.066 0.934 31 H 0.116 0.884 32 H 0.147 0.853 33 H 0.157 0.843 34 H 0.147 0.853 35 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -1.342 -1.140 -6.436 6.673 hybrid contribution -1.268 0.707 0.149 1.460 sum -2.611 -0.432 -6.287 6.821 Atomic orbital electron populations 1.24111 0.94616 1.03834 0.96646 1.22610 0.96361 0.96875 1.03401 1.22156 0.88724 0.97957 0.93203 1.90528 1.44651 1.21498 1.62454 1.47588 1.29255 1.08115 1.44609 1.21749 0.78540 0.89214 0.75912 1.90519 1.70913 1.40673 1.43080 1.17936 0.91456 0.90469 0.95984 0.89999 1.20957 1.26106 1.01694 1.09117 0.89929 1.25704 0.97721 0.97405 0.96131 1.70250 1.38764 1.28794 1.12955 0.85790 0.79557 0.80326 0.77177 1.19066 1.22683 1.18800 1.19836 0.93658 0.93538 0.96914 1.21068 0.95967 0.96709 1.00010 1.21192 0.98976 0.99789 0.96539 1.21204 1.00836 0.94200 0.99413 1.21335 0.97151 0.98914 0.99553 1.21141 0.95689 0.99640 0.93608 0.85431 0.87356 0.86644 0.91586 0.89859 0.74360 0.93417 0.88417 0.85271 0.84301 0.85321 0.86599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.07 14.31 67.78 0.97 -2.10 16 2 C -0.17 -4.40 9.89 25.64 0.25 -4.15 16 3 C 0.06 1.65 6.64 71.23 0.47 2.13 16 4 O -0.19 -7.95 11.09 -21.37 -0.24 -8.19 16 5 N -0.59 -25.59 6.29 -173.52 -1.09 -26.68 16 6 C 0.56 28.08 5.60 87.66 0.49 28.57 16 7 O -0.57 -33.80 14.36 14.34 0.21 -33.59 16 8 C 0.06 2.98 2.78 -13.03 -0.04 2.95 16 9 H 0.08 3.41 8.14 -2.39 -0.02 3.39 16 10 C -0.54 -25.76 7.12 25.60 0.18 -25.58 16 11 H 0.08 3.65 7.81 -2.91 -0.02 3.62 16 12 C 0.04 1.78 3.99 84.65 0.34 2.12 16 13 N -0.87 -49.21 10.89 21.45 0.23 -48.98 16 14 Si 0.95 40.10 29.54 68.60 2.03 42.13 16 15 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 16 H -0.30 -13.35 7.11 99.48 0.71 -12.64 16 17 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 18 C -0.04 -1.86 4.52 -19.87 -0.09 -1.95 16 19 C -0.12 -5.52 8.21 22.27 0.18 -5.33 16 20 C -0.15 -5.88 10.05 22.27 0.22 -5.66 16 21 C -0.14 -5.15 10.05 22.27 0.22 -4.93 16 22 C -0.15 -6.08 10.05 22.27 0.22 -5.85 16 23 C -0.08 -3.84 8.20 22.27 0.18 -3.65 16 24 H 0.13 1.94 8.06 -2.91 -0.02 1.92 16 25 H 0.11 1.93 7.90 -2.92 -0.02 1.91 16 26 H 0.12 2.94 8.06 -2.91 -0.02 2.91 16 27 H 0.07 1.84 7.86 -2.39 -0.02 1.82 16 28 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 29 H 0.42 15.05 8.43 -92.70 -0.78 14.26 16 30 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 31 H 0.10 4.62 7.01 -2.91 -0.02 4.59 16 32 H 0.13 4.35 8.06 -2.91 -0.02 4.32 16 33 H 0.14 4.06 8.06 -2.91 -0.02 4.04 16 34 H 0.13 4.37 8.06 -2.91 -0.02 4.34 16 35 H 0.12 5.55 6.02 -2.91 -0.02 5.53 16 Total: -1.00 -68.08 304.79 5.07 -63.01 By element: Atomic # 1 Polarization: 35.44 SS G_CDS: 0.31 Total: 35.75 kcal Atomic # 6 Polarization: -27.06 SS G_CDS: 3.62 Total: -23.44 kcal Atomic # 7 Polarization: -74.80 SS G_CDS: -0.86 Total: -75.66 kcal Atomic # 8 Polarization: -41.75 SS G_CDS: -0.03 Total: -41.78 kcal Atomic # 14 Polarization: 40.10 SS G_CDS: 2.03 Total: 42.13 kcal Total: -68.08 5.07 -63.01 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001635645664.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.056 kcal (2) G-P(sol) polarization free energy of solvation -68.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.010 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds