Wall clock time and date at job start Mon Mar 30 2020 00:12:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86801 * 120.00262 * 2 1 4 4 H 1.48499 * 109.46897 * 273.80048 * 3 2 1 5 5 H 1.48497 * 109.46950 * 33.79823 * 3 2 1 6 6 H 1.48496 * 109.47098 * 153.79552 * 3 2 1 7 7 C 1.38955 * 119.99960 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99876 * 341.97781 * 7 2 1 9 9 N 1.37097 * 119.99962 * 161.97436 * 7 2 1 10 10 C 1.34773 * 119.99876 * 320.10421 * 9 7 2 11 11 O 1.21293 * 120.00342 * 0.02562 * 10 9 7 12 12 C 1.50709 * 119.99944 * 179.72368 * 10 9 7 13 13 C 1.53001 * 109.47218 * 180.02562 * 12 10 9 14 14 C 1.50695 * 109.47106 * 180.02562 * 13 12 10 15 15 N 1.31799 * 119.12276 * 269.72962 * 14 13 12 16 16 C 1.32330 * 120.81601 * 179.75837 * 15 14 13 17 17 C 1.38599 * 119.10740 * 0.50891 * 16 15 14 18 18 C 1.38606 * 118.39535 * 359.74661 * 17 16 15 19 19 N 1.31790 * 119.12153 * 90.00002 * 14 13 12 20 20 C 1.46500 * 119.99940 * 140.10640 * 9 7 2 21 21 C 1.53002 * 117.49950 * 2.28904 * 20 9 7 22 22 C 1.52999 * 59.99991 * 252.51017 * 21 20 9 23 23 H 0.96999 * 119.99876 * 0.02562 * 1 2 3 24 24 H 1.08993 * 109.47006 * 300.00453 * 12 10 9 25 25 H 1.08996 * 109.46678 * 60.00455 * 12 10 9 26 26 H 1.08998 * 109.46876 * 300.00582 * 13 12 10 27 27 H 1.09008 * 109.46954 * 60.00193 * 13 12 10 28 28 H 1.08001 * 120.44964 * 180.23348 * 16 15 14 29 29 H 1.07995 * 120.80499 * 179.76762 * 17 16 15 30 30 H 1.08005 * 120.44327 * 180.02562 * 18 17 16 31 31 H 1.09004 * 115.54618 * 147.99378 * 20 9 7 32 32 H 1.09003 * 117.49487 * 359.97438 * 21 20 9 33 33 H 1.08997 * 117.49623 * 145.01553 * 21 20 9 34 34 H 1.09006 * 117.49903 * 252.51277 * 22 21 20 35 35 H 1.08998 * 117.51651 * 107.47935 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4153 2.0927 -1.3970 5 1 1.4882 2.6281 0.7788 6 1 3.5835 1.4182 0.6182 7 6 2.0089 -1.2034 0.0005 8 1 1.5086 -2.1156 0.2903 9 7 3.3294 -1.2327 -0.3668 10 6 3.7588 -0.4788 -1.3982 11 8 2.9771 0.2259 -2.0011 12 6 5.2116 -0.5063 -1.7981 13 6 5.4312 0.4318 -2.9867 14 6 6.8838 0.4039 -3.3869 15 7 7.7175 1.2634 -2.8363 16 6 9.0007 1.2653 -3.1596 17 6 9.4610 0.3548 -4.0978 18 6 8.5531 -0.5297 -4.6586 19 7 7.2855 -0.4759 -4.2822 20 6 4.2737 -2.0835 0.3616 21 6 3.7151 -2.9558 1.4877 22 6 4.5645 -1.7277 1.8210 23 1 -0.4850 0.8400 -0.0004 24 1 5.8256 -0.1791 -0.9591 25 1 5.4918 -1.5214 -2.0794 26 1 4.8171 0.1050 -3.8258 27 1 5.1510 1.4469 -2.7050 28 1 9.6794 1.9698 -2.7020 29 1 10.5019 0.3348 -4.3847 30 1 8.8759 -1.2533 -5.3925 31 1 5.0938 -2.4897 -0.2305 32 1 2.6450 -2.8963 1.6867 33 1 4.1676 -3.9362 1.6365 34 1 5.5759 -1.9001 2.1891 35 1 4.0535 -0.8604 2.2389 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000584694354.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:12:04 Heat of formation + Delta-G solvation = 56.451675 kcal Electronic energy + Delta-G solvation = -19324.010410 eV Core-core repulsion = 16323.981845 eV Total energy + Delta-G solvation = -3000.028565 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 261.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.08502 -39.14649 -36.50510 -34.09974 -33.77512 -32.83352 -31.50140 -30.58058 -26.33044 -24.62633 -24.15637 -22.23099 -21.77379 -21.19009 -19.07520 -17.61196 -17.33863 -16.74774 -16.18440 -15.45402 -15.30322 -14.94714 -14.43073 -14.14067 -13.69602 -13.45850 -13.39994 -12.71953 -12.62819 -12.32441 -11.77645 -11.50061 -11.10787 -10.96153 -10.86270 -10.80415 -10.65293 -10.28249 -10.00295 -9.92370 -9.59940 -9.56479 -9.29108 -8.50310 -8.41754 -7.46772 -6.13482 -3.91246 0.78356 0.99734 3.32048 3.54747 3.65346 3.74332 3.84291 3.88504 4.10071 4.41377 4.46201 4.52122 4.70380 4.84172 4.95730 5.14187 5.29326 5.42066 5.44291 5.49297 5.60054 5.64484 5.71446 5.79383 5.95478 6.17392 6.23049 6.30509 6.35271 6.50778 6.68897 6.86262 6.92858 7.88057 7.98250 8.06645 8.79690 8.93077 9.46751 9.83078 10.90060 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.024104 B = 0.006043 C = 0.005410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.368820 B = 4632.307309 C = 5173.963863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.088 3.912 3 Si 0.921 3.079 4 H -0.249 1.249 5 H -0.316 1.316 6 H -0.284 1.284 7 C -0.349 4.349 8 H 0.097 0.903 9 N -0.434 5.434 10 C 0.449 3.551 11 O -0.540 6.540 12 C -0.121 4.121 13 C -0.039 4.039 14 C 0.332 3.668 15 N -0.516 5.516 16 C 0.148 3.852 17 C -0.243 4.243 18 C 0.148 3.852 19 N -0.515 5.515 20 C 0.064 3.936 21 C -0.172 4.172 22 C -0.199 4.199 23 H 0.272 0.728 24 H 0.081 0.919 25 H 0.084 0.916 26 H 0.100 0.900 27 H 0.096 0.904 28 H 0.166 0.834 29 H 0.145 0.855 30 H 0.167 0.833 31 H 0.110 0.890 32 H 0.111 0.889 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.385 -1.443 -4.199 19.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.121 4.121 3 Si 0.754 3.246 4 H -0.175 1.175 5 H -0.246 1.246 6 H -0.209 1.209 7 C -0.474 4.474 8 H 0.114 0.886 9 N -0.154 5.154 10 C 0.240 3.760 11 O -0.424 6.424 12 C -0.163 4.163 13 C -0.078 4.078 14 C 0.065 3.935 15 N -0.230 5.230 16 C -0.018 4.018 17 C -0.265 4.265 18 C -0.019 4.019 19 N -0.229 5.229 20 C -0.042 4.042 21 C -0.210 4.210 22 C -0.238 4.238 23 H 0.082 0.918 24 H 0.100 0.900 25 H 0.102 0.898 26 H 0.118 0.882 27 H 0.114 0.886 28 H 0.183 0.817 29 H 0.163 0.837 30 H 0.184 0.816 31 H 0.128 0.872 32 H 0.129 0.871 33 H 0.105 0.895 34 H 0.104 0.896 35 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 17.831 -1.001 -4.256 18.359 hybrid contribution 1.564 0.677 -0.101 1.708 sum 19.395 -0.324 -4.357 19.881 Atomic orbital electron populations 1.69735 1.06868 1.28209 1.45524 1.25336 0.95006 0.99673 0.92057 0.86208 0.78576 0.81699 0.78160 1.17534 1.24627 1.20941 1.18788 0.82835 0.95919 1.49891 0.88595 1.43129 1.07664 1.38916 1.25678 1.20080 0.89430 0.84825 0.81691 1.90518 1.56161 1.41449 1.54294 1.21462 0.96579 1.00339 0.97883 1.20211 0.85733 1.02470 0.99403 1.23484 0.97425 0.85461 0.87098 1.68364 1.04007 1.24126 1.26487 1.23271 0.92053 0.94817 0.91700 1.22873 1.02648 0.99704 1.01300 1.23275 0.88340 0.95062 0.95184 1.68355 1.17695 1.22867 1.13958 1.21805 0.95720 0.98863 0.87836 1.23123 1.01616 0.93829 1.02390 1.23270 0.99982 1.00356 1.00181 0.91842 0.90037 0.89802 0.88175 0.88603 0.81660 0.83729 0.81624 0.87238 0.87063 0.89465 0.89588 0.88552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.87 13.96 55.50 0.77 -26.10 16 2 C 0.09 2.63 4.90 -17.47 -0.09 2.54 16 3 Si 0.92 25.15 24.53 -169.99 -4.17 20.98 16 4 H -0.25 -7.05 6.10 56.52 0.34 -6.71 16 5 H -0.32 -8.50 7.11 56.52 0.40 -8.10 16 6 H -0.28 -7.49 7.11 56.52 0.40 -7.09 16 7 C -0.35 -9.87 8.77 -14.93 -0.13 -10.00 16 8 H 0.10 2.82 6.96 -52.49 -0.37 2.46 16 9 N -0.43 -10.56 2.56 -107.72 -0.28 -10.84 16 10 C 0.45 10.80 5.87 -10.98 -0.06 10.73 16 11 O -0.54 -14.97 10.83 5.55 0.06 -14.91 16 12 C -0.12 -2.25 4.32 -27.88 -0.12 -2.37 16 13 C -0.04 -0.69 4.94 -27.88 -0.14 -0.83 16 14 C 0.33 5.22 6.90 -157.20 -1.08 4.13 16 15 N -0.52 -7.60 10.33 -10.73 -0.11 -7.71 16 16 C 0.15 1.56 11.30 -17.20 -0.19 1.36 16 17 C -0.24 -2.10 10.17 -39.31 -0.40 -2.50 16 18 C 0.15 1.52 11.31 -17.20 -0.19 1.33 16 19 N -0.51 -7.40 10.33 -10.72 -0.11 -7.51 16 20 C 0.06 1.22 5.85 -67.93 -0.40 0.82 16 21 C -0.17 -3.00 9.80 -26.73 -0.26 -3.26 16 22 C -0.20 -3.47 10.37 -26.73 -0.28 -3.75 16 23 H 0.27 7.96 8.31 -40.82 -0.34 7.62 16 24 H 0.08 1.44 8.11 -51.93 -0.42 1.02 16 25 H 0.08 1.40 7.56 -51.93 -0.39 1.00 16 26 H 0.10 1.83 8.10 -51.93 -0.42 1.41 16 27 H 0.10 1.82 8.10 -51.92 -0.42 1.40 16 28 H 0.17 1.16 8.06 -52.49 -0.42 0.73 16 29 H 0.14 0.71 8.06 -52.49 -0.42 0.29 16 30 H 0.17 1.11 8.06 -52.48 -0.42 0.69 16 31 H 0.11 1.77 6.99 -51.93 -0.36 1.41 16 32 H 0.11 2.22 6.49 -51.93 -0.34 1.88 16 33 H 0.09 1.24 8.14 -51.93 -0.42 0.81 16 34 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.10 1.91 8.14 -51.93 -0.42 1.49 16 LS Contribution 296.57 15.07 4.47 4.47 Total: -1.00 -35.13 296.57 -7.16 -42.29 By element: Atomic # 1 Polarization: 5.56 SS G_CDS: -4.45 Total: 1.11 kcal Atomic # 6 Polarization: 1.56 SS G_CDS: -3.35 Total: -1.79 kcal Atomic # 7 Polarization: -52.43 SS G_CDS: 0.28 Total: -52.15 kcal Atomic # 8 Polarization: -14.97 SS G_CDS: 0.06 Total: -14.91 kcal Atomic # 14 Polarization: 25.15 SS G_CDS: -4.17 Total: 20.98 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -35.13 -7.16 -42.29 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584694354.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.743 kcal (2) G-P(sol) polarization free energy of solvation -35.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds